MD15G1136600.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011813
Physical Location & Seq
Forward (+)
10025017 .. 10026934
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1136600.v1.1.491

Sequence Viewer

Length: 924 bp
ATGAGCGGAGGAGGAGACGAGCAGCAGCAGCAGCAGCTGGAGTTACCGCCGGGGTTCAGATTTCACCCGACGGATGAGGAACTGGTGAACCATTACTTGTGCAGGAAATGCGCTTCACAGCCTCTCGCTGTTCCAATCATCAGAGAAATTGATCTTTACAAATTCGATCCGTGGCAGCTCCCTGAAATGGCACTTTACGGAGAGAAAGAATGGTATTTCTTTTCGCCAAGGGACAGAAAATATCCAAACGGTTCAAGGCCGAACCGGGCAGCCGGAACCGGGTACTGGAAGGCGACCGGGGCTGACAAGCACATTGGAAAACCCAAGGCACTCGGGATTAAAAAGGCACTCGTGTTCTACGCTGGTAAAGCCCCCAAAGGAATCAAAACCAATTGGATCATGCACGAGTACCGCCTCGCCAATGTCGACCGGTCCGCCGCCGCTGCCAAGAAAAATCAAAACCTGAGGCTTGATGATTGGGTACTATGCCGCATATACAACAAGAAGGGCAGCATAGAGAAATACAATGTTACAACCAAAATGACCAAATACCCAGAAATATCGGACGAGCAAAAACCTGACATGACTATAATGCCCCCGCCGCCGCATGCAGCATCAAACACGCATCACATGATGGATTCGTCGATGGATTCAGTACCGAGGTTGCCACAGACGACGACGGACTACTCGAGCTGCTCGGAGCACGTGCTGTCACCGGAGGTCACGTGGGAGAAGGAGGTCCAAAGTGAACTGAAATGGAGCAATCAATTGGAGAATTCCTTCAATACCCTCGACAATCAGTTCCTGAATTACATGGATGGCTTCTCGGATATTATGGACCCTTTTGGGGGGCAATTGCAAATGGAGCAGCAGCAGCCCTACCAGTTGCAGGACATGTACTCCTATCTCCACACCCAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

308

Amino Acids

35.46

Weight (kDa)

6.32

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 139 5.7e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 426
AclWI GGATC 2 cut(s) 161, 404
AcsI RAATTY 2 cut(s) 161, 775
AcvI CACGTG 2 cut(s) 706, 726
AfaI GTAC 5 cut(s) 284, 410, 483, 657, 899
AfiI CCNNNNNNNGG 6 cut(s) 187, 279, 285, 847, 848, 889
AflIII ACRYGT 1 cut(s) 894
AgeI ACCGGT 1 cut(s) 429
AgsI TTSAA 2 cut(s) 255, 784
AluBI AGCT 3 cut(s) 37, 178, 693
AluI AGCT 3 cut(s) 37, 178, 693
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 161, 404
AlwNI CAGNNNCTG 2 cut(s) 37, 805
Ama87I CYCGRG 2 cut(s) 332, 688
AoxI GGCC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 161, 775
AsiGI ACCGGT 1 cut(s) 429
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 3 cut(s) 432, 739, 838
AsuC2I CCSGG 4 cut(s) 51, 266, 280, 298
AsuHPI GGTGA 3 cut(s) 56, 97, 705
AvaI CYCGRG 2 cut(s) 332, 688
AvaII GGWCC 3 cut(s) 432, 739, 838
AxyI CCTNAGG 1 cut(s) 464
BauI CACGAG 2 cut(s) 350, 404
BbrPI CACGTG 2 cut(s) 706, 726
Bbv12I GWGCWC 1 cut(s) 705
BccI CCATC 3 cut(s) 628, 640, 812
BcnI CCSGG 4 cut(s) 51, 266, 280, 298
BcoDI GTCTC 1 cut(s) 9
Bme1390I CCNGG 4 cut(s) 51, 266, 280, 298
Bme18I GGWCC 3 cut(s) 432, 739, 838
BmeT110I CYCGRG 2 cut(s) 332, 688
BmgT120I GGNCC 3 cut(s) 432, 739, 838
BmiI GGNNCC 2 cut(s) 277, 840
BmrFI CCNGG 4 cut(s) 51, 266, 280, 298
BmsI GCATC 2 cut(s) 623, 634
BpmI CTGGAG 1 cut(s) 59
BpuMI CCSGG 4 cut(s) 51, 266, 280, 298
BsaAI YACGTR 2 cut(s) 706, 726
BsaJI CCNNGG 6 cut(s) 50, 170, 227, 297, 324, 659
BsaWI WCCGGW 2 cut(s) 429, 715
BsaXI ACNNNNNCTCC 4 cut(s) 710, 740, 884, 914
Bsc4I CCNNNNNNNGG 6 cut(s) 187, 279, 285, 847, 848, 889
Bse118I RCCGGY 1 cut(s) 429
Bse1I ACTGG 3 cut(s) 87, 290, 883
Bse21I CCTNAGG 1 cut(s) 464
BseDI CCNNGG 6 cut(s) 50, 170, 227, 297, 324, 659
BseGI GGATG 2 cut(s) 79, 823
BseLI CCNNNNNNNGG 6 cut(s) 187, 279, 285, 847, 848, 889
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 3 cut(s) 87, 290, 883
BseRI GAGGAG 2 cut(s) 24, 27
BsgI GTGCAG 1 cut(s) 121
Bsh1285I CGRYCG 2 cut(s) 297, 430
BshFI GGCC 1 cut(s) 259
BshTI ACCGGT 1 cut(s) 429
BsiEI CGRYCG 2 cut(s) 297, 430
BsiHKAI GWGCWC 1 cut(s) 705
BsiHKCI CYCGRG 2 cut(s) 332, 688
BsiSI CCGG 7 cut(s) 50, 265, 273, 279, 297, 430, 716
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 6 cut(s) 187, 279, 285, 847, 848, 889
BsmAI GTCTC 1 cut(s) 9
BsmBI CGTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 259
BsoBI CYCGRG 2 cut(s) 332, 688
Bsp1286I GDGCHC 1 cut(s) 705
Bsp143I GATC 3 cut(s) 151, 166, 396
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 456
BspLI GGNNCC 2 cut(s) 277, 840
BspPI GGATC 2 cut(s) 161, 404
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 429
BsrI ACTGG 3 cut(s) 87, 290, 883
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 6 cut(s) 50, 170, 227, 297, 324, 659
BssMI GATC 3 cut(s) 151, 166, 396
BssSI CACGAG 2 cut(s) 350, 404
BssT1I CCWWGG 2 cut(s) 227, 324
Bst2BI CACGAG 2 cut(s) 350, 404
Bst4CI ACNGT 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 108
BstBAI YACGTR 2 cut(s) 706, 726
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 1 cut(s) 464
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 79, 823
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 3 cut(s) 154, 169, 399
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 151, 166, 396
BstMCI CGRYCG 2 cut(s) 297, 430
BstNSI RCATGY 2 cut(s) 611, 898
BstSCI CCNGG 4 cut(s) 49, 264, 278, 296
Bsu36I CCTNAGG 1 cut(s) 464
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 79, 823
Cac8I GCNNGC 1 cut(s) 609
CaiI CAGNNNCTG 2 cut(s) 37, 805
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 429
Cfr13I GGNCC 3 cut(s) 432, 739, 838
CpoI CGGWCCG 1 cut(s) 432
Csp6I GTAC 5 cut(s) 283, 409, 482, 656, 898
CspAI ACCGGT 1 cut(s) 429
CspI CGGWCCG 1 cut(s) 432
CviAII CATG 6 cut(s) 400, 583, 608, 631, 814, 895
CviQI GTAC 5 cut(s) 283, 409, 482, 656, 898
DdeI CTNAG 1 cut(s) 464
DpnI GATC 3 cut(s) 153, 168, 398
DpnII GATC 3 cut(s) 151, 166, 396
EciI GGCGGA 1 cut(s) 424
Eco130I CCWWGG 2 cut(s) 227, 324
Eco47I GGWCC 3 cut(s) 432, 739, 838
Eco72I CACGTG 2 cut(s) 706, 726
Eco81I CCTNAGG 1 cut(s) 464
Eco88I CYCGRG 2 cut(s) 332, 688
EcoRI GAATTC 1 cut(s) 775
EcoT14I CCWWGG 2 cut(s) 227, 324
ErhI CCWWGG 2 cut(s) 227, 324
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 6 cut(s) 403, 586, 611, 634, 817, 898
FaqI GGGAC 1 cut(s) 245
FatI CATG 6 cut(s) 399, 582, 607, 630, 813, 894
FauI CCCGC 1 cut(s) 606
FblI GTMKAC 1 cut(s) 426
FokI GGATG 2 cut(s) 86, 830
GlaI GCGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 1 cut(s) 259
HapII CCGG 7 cut(s) 50, 265, 273, 279, 297, 430, 716
HhaI GCGC 1 cut(s) 113
Hin1II CATG 6 cut(s) 403, 586, 611, 634, 817, 898
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 3 cut(s) 381, 638, 650
HpaII CCGG 7 cut(s) 50, 265, 273, 279, 297, 430, 716
HphI GGTGA 3 cut(s) 56, 97, 705
Hpy166II GTNNAC 3 cut(s) 88, 427, 749
Hpy188I TCNGA 5 cut(s) 59, 143, 565, 700, 829
Hpy188III TCNNGA 2 cut(s) 334, 805
Hpy8I GTNNAC 3 cut(s) 88, 427, 749
Hpy99I CGWCG 4 cut(s) 73, 646, 679, 682
HpyAV CCTTC 4 cut(s) 283, 499, 727, 790
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 2 cut(s) 705, 725
HpyCH4V TGCA 5 cut(s) 102, 403, 611, 859, 889
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 2 cut(s) 705, 725
Hsp92II CATG 6 cut(s) 403, 586, 611, 634, 817, 898
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 3 cut(s) 151, 166, 396
LmnI GCTCC 4 cut(s) 183, 700, 759, 865
LweI GCATC 2 cut(s) 623, 634
MaeII ACGT 2 cut(s) 705, 725
MaeIII GTNAC 4 cut(s) 42, 529, 711, 721
MalI GATC 3 cut(s) 153, 168, 398
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 151, 166, 396
MfeI CAATTG 3 cut(s) 391, 767, 854
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 8 cut(s) 147, 161, 391, 767, 775, 808, 854, 917
MnlI CCTC 9 cut(s) 5, 70, 132, 425, 459, 654, 712, 730, 800
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 2 cut(s) 339, 922
MspA1I CMGCKG 2 cut(s) 37, 443
MspI CCGG 7 cut(s) 50, 265, 273, 279, 297, 430, 716
MspR9I CCNGG 4 cut(s) 51, 266, 280, 298
MunI CAATTG 3 cut(s) 391, 767, 854
NciI CCSGG 4 cut(s) 51, 266, 280, 298
NdeII GATC 3 cut(s) 151, 166, 396
NlaIII CATG 6 cut(s) 403, 586, 611, 634, 817, 898
NlaIV GGNNCC 2 cut(s) 277, 840
NmuCI GTSAC 2 cut(s) 711, 721
NspI RCATGY 2 cut(s) 611, 898
PaeI GCATGC 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 688
PciI ACATGT 1 cut(s) 894
PcsI WCGNNNNNNNCGW 2 cut(s) 423, 686
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 3 cut(s) 381, 638, 650
PinAI ACCGGT 1 cut(s) 429
PmaCI CACGTG 2 cut(s) 706, 726
PmlI CACGTG 2 cut(s) 706, 726
Ppu21I YACGTR 2 cut(s) 706, 726
PscI ACATGT 1 cut(s) 894
PspCI CACGTG 2 cut(s) 706, 726
PspN4I GGNNCC 2 cut(s) 277, 840
PspPI GGNCC 3 cut(s) 432, 739, 838
PspXI VCTCGAGB 1 cut(s) 688
PstNI CAGNNNCTG 2 cut(s) 37, 805
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 5 cut(s) 284, 410, 483, 657, 899
RsaNI GTAC 5 cut(s) 283, 409, 482, 656, 898
Rsr2I CGGWCCG 1 cut(s) 432
RsrII CGGWCCG 1 cut(s) 432
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 339, 922
Sau3AI GATC 3 cut(s) 151, 166, 396
Sau96I GGNCC 3 cut(s) 432, 739, 838
ScrFI CCNGG 4 cut(s) 51, 266, 280, 298
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 2 cut(s) 623, 634
Sfr274I CTCGAG 1 cut(s) 688
SinI GGWCC 3 cut(s) 432, 739, 838
SlaI CTCGAG 1 cut(s) 688
SmlI CTYRAG 1 cut(s) 688
SmoI CTYRAG 1 cut(s) 688
SphI GCATGC 1 cut(s) 611
Sse9I AATT 8 cut(s) 147, 161, 391, 767, 775, 808, 854, 917
StyD4I CCNGG 4 cut(s) 49, 264, 278, 296
StyI CCWWGG 2 cut(s) 227, 324
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 2 cut(s) 708, 728
TaqI TCGA 5 cut(s) 165, 426, 644, 689, 792
TasI AATT 8 cut(s) 147, 161, 391, 767, 775, 808, 854, 917
TatI WGTACW 1 cut(s) 897
TauI GCSGC 5 cut(s) 440, 443, 492, 604, 607
TfiI GAWTC 3 cut(s) 381, 638, 650
Tru1I TTAA 2 cut(s) 339, 922
Tru9I TTAA 2 cut(s) 339, 922
TseFI GTSAC 2 cut(s) 711, 721
Tsp45I GTSAC 2 cut(s) 711, 721
TspGWI ACGGA 4 cut(s) 86, 159, 213, 695
VpaK11BI GGWCC 3 cut(s) 432, 739, 838
XapI RAATTY 2 cut(s) 161, 775
XceI RCATGY 2 cut(s) 611, 898
XhoI CTCGAG 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 426
XmnI GAANNNNTTC 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.