FvH4_1g25150
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011813
Physical Location & Seq
Forward (+)
16950650 .. 16953023
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25150.t1

Sequence Viewer

Length: 966 bp
ATGAAGGCTGAGTTGGATTTACCGGCGGGGTTCAGGTTTCATCCGACCGATGAGGAGCTGGTGAACCACTACTTGATCAAGAAATGTGCTTCCCAGAATATTTCGGTTCCCATCATCAAAGAGATTGATCTTTACAAATTCGATCCATGGCAGTTACCTGAAATGGCGCTGTATGGTGAGAAAGAATGGTATTTCTTTTCTCCAAGGGACAGAAAATATCCAAACGGTTCAAGGCCGAACCGGGCGGCCGGAACCGGGTACTGGAAGGCGACCGGAGCAGACAAGCACATTGGAAAGCCAAAGGCGCTTGGGATCAAAAAGGCTCTTGTTTTCTATGCCGGGAAAGCCCCTAAAGGAGTCAAGACCAATTGGATCATGCATGAGTATCGACTTGCAAATGTTGATCGGTCTGCTTCCAAGAAAAACCACAACTTGAGGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAAGGTAGCATTGAGAAGTATAACACTGCTACCGTGGAAAGGAATAGATTCCCAACATACTCGGAAATAATGGACCATGAGGAGAAGCCAGAATTGAAAAACATACAGTTCAATGTAGCACCATCACAAGTGCCACAAATGCCATCAGCTGTAGCACCAGTTACACAGCACACGGATGTTCTGTCCGGAGATTATTCAGCACCGAGATTGCAGCACACGCAACACACGACAGACTATTCTAGCTGCTCGGATCATGTATTCTCGCCGGAGGTCCAGAGCGAGTTCCAGTGGACTAGTAGTCCTGAATTCAGTGAATTGGACAATTCCATGAACATGAACTTCCTTGAGAGCAATGACCAGTTCAATTACATGGATGGCTTCTCACTAGCAGATATTGATGACCCTTTTGGCAATCAAGCTCAAGCTCAAGCTCAGACTCAGTATCAAATGGACCAGCAGGACCTGTTCATGTACTTGCAAAACCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

322

Amino Acids

37.02

Weight (kDa)

5.94

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 131 3.3e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 659
AciI CCGC 2 cut(s) 26, 245
AclWI GGATC 4 cut(s) 137, 320, 380, 732
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 4 cut(s) 137, 462, 779, 960
AfaI GTAC 2 cut(s) 260, 947
AfiI CCNNNNNNNGG 3 cut(s) 255, 261, 513
AgsI TTSAA 4 cut(s) 231, 571, 586, 838
AhdI GACNNNNNGTC 1 cut(s) 771
AhlI ACTAGT 1 cut(s) 767
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 6 cut(s) 58, 623, 717, 893, 899, 905
AluI AGCT 6 cut(s) 58, 623, 717, 893, 899, 905
AlwI GGATC 4 cut(s) 137, 320, 380, 732
AlwNI CAGNNNCTG 1 cut(s) 937
Aor13HI TCCGGA 1 cut(s) 659
AoxI GGCC 2 cut(s) 233, 246
ApeKI GCWGC 2 cut(s) 685, 717
ApoI RAATTY 4 cut(s) 137, 462, 779, 960
Asp700I GAANNNNTTC 1 cut(s) 521
AspLEI GCGC 2 cut(s) 169, 307
AspS9I GGNCC 4 cut(s) 547, 745, 925, 934
AsuC2I CCSGG 3 cut(s) 242, 256, 340
AsuHPI GGTGA 2 cut(s) 73, 188
AvaII GGWCC 4 cut(s) 547, 745, 925, 934
BbvI GCAGC 2 cut(s) 697, 704
BccI CCATC 4 cut(s) 119, 604, 625, 842
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BclI TGATCA 1 cut(s) 75
BcnI CCSGG 3 cut(s) 242, 256, 340
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 3 cut(s) 714, 768, 860
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 2 cut(s) 170, 308
BisI GCNGC 3 cut(s) 246, 686, 718
BlsI GCNGC 3 cut(s) 247, 687, 719
Bme1390I CCNGG 3 cut(s) 242, 256, 340
Bme18I GGWCC 4 cut(s) 547, 745, 925, 934
BmeRI GACNNNNNGTC 1 cut(s) 771
BmgT120I GGNCC 4 cut(s) 547, 745, 925, 934
BmiI GGNNCC 2 cut(s) 108, 253
BmrFI CCNGG 3 cut(s) 242, 256, 340
BpuEI CTTGAG 4 cut(s) 454, 839, 879, 885
BpuMI CCSGG 3 cut(s) 242, 256, 340
BsaJI CCNNGG 3 cut(s) 146, 203, 507
BsaWI WCCGGW 2 cut(s) 272, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 261, 513
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 4 cut(s) 266, 632, 760, 832
Bse3DI GCAATG 1 cut(s) 832
BseAI TCCGGA 1 cut(s) 659
BseDI CCNNGG 3 cut(s) 146, 203, 507
BseGI GGATG 3 cut(s) 40, 655, 853
BseLI CCNNNNNNNGG 3 cut(s) 255, 261, 513
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 2 cut(s) 920, 926
BseNI ACTGG 4 cut(s) 266, 632, 760, 832
BseRI GAGGAG 2 cut(s) 68, 569
BseX3I CGGCCG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 697, 704
Bsh1285I CGRYCG 3 cut(s) 48, 249, 273
BshFI GGCC 2 cut(s) 235, 248
BsiEI CGRYCG 3 cut(s) 48, 249, 273
BsiSI CCGG 8 cut(s) 23, 241, 249, 255, 273, 339, 660, 740
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 255, 261, 513
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 2 cut(s) 235, 248
Bsp13I TCCGGA 1 cut(s) 659
Bsp143I GATC 7 cut(s) 75, 127, 142, 312, 372, 403, 724
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 2 cut(s) 26, 245
BspANI GGCC 2 cut(s) 235, 248
BspCNI CTCAG 2 cut(s) 919, 925
BspEI TCCGGA 1 cut(s) 659
BspLI GGNNCC 2 cut(s) 108, 253
BspPI GGATC 4 cut(s) 137, 320, 380, 732
BsrDI GCAATG 1 cut(s) 832
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 4 cut(s) 266, 632, 760, 832
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 146, 203, 507
BssMI GATC 7 cut(s) 75, 127, 142, 312, 372, 403, 724
BssT1I CCWWGG 2 cut(s) 146, 203
Bst4CI ACNGT 3 cut(s) 227, 508, 582
BstDEI CTNAG 3 cut(s) 9, 906, 912
BstDSI CCRYGG 2 cut(s) 146, 507
BstF5I GGATG 3 cut(s) 40, 655, 853
BstH2I RGCGCY 2 cut(s) 170, 308
BstHHI GCGC 2 cut(s) 169, 307
BstKTI GATC 7 cut(s) 78, 130, 145, 315, 375, 406, 727
BstMBI GATC 7 cut(s) 75, 127, 142, 312, 372, 403, 724
BstMCI CGRYCG 3 cut(s) 48, 249, 273
BstMWI GCNNNNNNNGC 5 cut(s) 275, 304, 344, 613, 691
BstSCI CCNGG 3 cut(s) 240, 254, 338
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 2 cut(s) 697, 704
BstZI CGGCCG 1 cut(s) 246
BsuRI GGCC 2 cut(s) 235, 248
BtgI CCRYGG 2 cut(s) 146, 507
BtsCI GGATG 3 cut(s) 40, 655, 853
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 3 cut(s) 498, 767, 790
CaiI CAGNNNCTG 1 cut(s) 937
CfoI GCGC 2 cut(s) 169, 307
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 4 cut(s) 547, 745, 925, 934
Csp6I GTAC 2 cut(s) 259, 946
CviAII CATG 9 cut(s) 147, 376, 380, 551, 728, 802, 808, 844, 943
CviQI GTAC 2 cut(s) 259, 946
DdeI CTNAG 3 cut(s) 9, 906, 912
DpnI GATC 7 cut(s) 77, 129, 144, 314, 374, 405, 726
DpnII GATC 7 cut(s) 75, 127, 142, 312, 372, 403, 724
DriI GACNNNNNGTC 1 cut(s) 771
EaeI YGGCCR 1 cut(s) 246
EagI CGGCCG 1 cut(s) 246
Eam1105I GACNNNNNGTC 1 cut(s) 771
EclXI CGGCCG 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 146, 203
Eco47I GGWCC 4 cut(s) 547, 745, 925, 934
Eco52I CGGCCG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 934
EcoRI GAATTC 1 cut(s) 779
EcoT14I CCWWGG 2 cut(s) 146, 203
EcoT22I ATGCAT 1 cut(s) 381
ErhI CCWWGG 2 cut(s) 146, 203
FaeI CATG 9 cut(s) 150, 379, 383, 554, 731, 805, 811, 847, 946
FaqI GGGAC 1 cut(s) 221
FatI CATG 9 cut(s) 146, 375, 379, 550, 727, 801, 807, 843, 942
FauI CCCGC 1 cut(s) 19
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 246, 686, 718
FokI GGATG 3 cut(s) 27, 662, 860
Fsp4HI GCNGC 3 cut(s) 246, 686, 718
FspBI CTAG 3 cut(s) 714, 768, 860
GlaI GCGC 2 cut(s) 168, 306
GluI GCNGC 3 cut(s) 246, 686, 718
HaeII RGCGCY 2 cut(s) 170, 308
HaeIII GGCC 2 cut(s) 235, 248
HapII CCGG 8 cut(s) 23, 241, 249, 255, 273, 339, 660, 740
HhaI GCGC 2 cut(s) 169, 307
Hin1II CATG 9 cut(s) 150, 379, 383, 554, 731, 805, 811, 847, 946
Hin6I GCGC 2 cut(s) 167, 305
HinP1I GCGC 2 cut(s) 167, 305
HinfI GANTC 3 cut(s) 357, 522, 910
HpaII CCGG 8 cut(s) 23, 241, 249, 255, 273, 339, 660, 740
HphI GGTGA 2 cut(s) 73, 188
Hpy166II GTNNAC 2 cut(s) 64, 765
Hpy188I TCNGA 4 cut(s) 45, 538, 724, 909
Hpy188III TCNNGA 5 cut(s) 79, 361, 660, 748, 776
Hpy8I GTNNAC 2 cut(s) 64, 765
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 3 cut(s) 227, 508, 582
HpyCH4V TGCA 4 cut(s) 379, 395, 685, 952
HpyF10VI GCNNNNNNNGC 5 cut(s) 275, 304, 344, 613, 691
HpyF3I CTNAG 3 cut(s) 9, 906, 912
Hsp92II CATG 9 cut(s) 150, 379, 383, 554, 731, 805, 811, 847, 946
HspAI GCGC 2 cut(s) 167, 305
Kpn2I TCCGGA 1 cut(s) 659
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 7 cut(s) 75, 127, 142, 312, 372, 403, 724
LmnI GCTCC 2 cut(s) 55, 275
Lsp1109I GCAGC 2 cut(s) 697, 704
MaeI CTAG 3 cut(s) 714, 768, 860
MaeIII GTNAC 2 cut(s) 153, 634
MalI GATC 7 cut(s) 77, 129, 144, 314, 374, 405, 726
MboI GATC 7 cut(s) 75, 127, 142, 312, 372, 403, 724
MfeI CAATTG 1 cut(s) 367
MluCI AATT 9 cut(s) 137, 367, 462, 566, 779, 788, 796, 838, 960
MlyI GAGTC 2 cut(s) 366, 904
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 4 cut(s) 46, 429, 547, 736
Mph1103I ATGCAT 1 cut(s) 381
MroI TCCGGA 1 cut(s) 659
MroXI GAANNNNTTC 1 cut(s) 521
MseI TTAA 1 cut(s) 964
MslI CAYNNNNRTG 2 cut(s) 648, 806
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 8 cut(s) 23, 241, 249, 255, 273, 339, 660, 740
MspR9I CCNGG 3 cut(s) 242, 256, 340
MunI CAATTG 1 cut(s) 367
MwoI GCNNNNNNNGC 5 cut(s) 275, 304, 344, 613, 691
NciI CCSGG 3 cut(s) 242, 256, 340
NcoI CCATGG 1 cut(s) 146
NdeII GATC 7 cut(s) 75, 127, 142, 312, 372, 403, 724
NlaIII CATG 9 cut(s) 150, 379, 383, 554, 731, 805, 811, 847, 946
NlaIV GGNNCC 2 cut(s) 108, 253
NsiI ATGCAT 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 698
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 522
PkrI GCNGC 3 cut(s) 247, 687, 719
PleI GAGTC 2 cut(s) 365, 904
PpsI GAGTC 2 cut(s) 365, 904
PpuMI RGGWCCY 1 cut(s) 934
Psp5II RGGWCCY 1 cut(s) 934
PspN4I GGNNCC 2 cut(s) 108, 253
PspPI GGNCC 4 cut(s) 547, 745, 925, 934
PspPPI RGGWCCY 1 cut(s) 934
PstNI CAGNNNCTG 1 cut(s) 937
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 2 cut(s) 260, 947
RsaNI GTAC 2 cut(s) 259, 946
RseI CAYNNNNRTG 2 cut(s) 648, 806
SaqAI TTAA 1 cut(s) 964
SatI GCNGC 3 cut(s) 246, 686, 718
Sau3AI GATC 7 cut(s) 75, 127, 142, 312, 372, 403, 724
Sau96I GGNCC 4 cut(s) 547, 745, 925, 934
SchI GAGTC 2 cut(s) 366, 904
ScrFI CCNGG 3 cut(s) 242, 256, 340
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 4 cut(s) 547, 745, 925, 934
SmiMI CAYNNNNRTG 2 cut(s) 648, 806
SmlI CTYRAG 4 cut(s) 433, 818, 894, 900
SmoI CTYRAG 4 cut(s) 433, 818, 894, 900
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 9 cut(s) 137, 367, 462, 566, 779, 788, 796, 838, 960
SsiI CCGC 2 cut(s) 26, 245
SspI AATATT 1 cut(s) 100
SspMI CTAG 3 cut(s) 714, 768, 860
StyD4I CCNGG 3 cut(s) 240, 254, 338
StyI CCWWGG 2 cut(s) 146, 203
TaaI ACNGT 3 cut(s) 227, 508, 582
TaqI TCGA 2 cut(s) 141, 388
TaqII GACCGA 2 cut(s) 62, 396
TasI AATT 9 cut(s) 137, 367, 462, 566, 779, 788, 796, 838, 960
TatI WGTACW 1 cut(s) 945
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 1 cut(s) 964
Tru9I TTAA 1 cut(s) 964
TscAI CASTG 3 cut(s) 505, 767, 790
TseI GCWGC 2 cut(s) 685, 717
TspDTI ATGAA 5 cut(s) 17, 29, 818, 824, 931
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 3 cut(s) 505, 767, 790
VpaK11BI GGWCC 4 cut(s) 547, 745, 925, 934
XapI RAATTY 4 cut(s) 137, 462, 779, 960
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 3 cut(s) 714, 768, 860
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.