pycom15g12330
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011813
Physical Location & Seq
Forward (+)
8439140 .. 8440674
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12330.3

Sequence Viewer

Length: 921 bp
ATGAGCAGAGGAGGAGACGAGCAGCAGCAGCAGCTGGAGTTACCGCCGGGGTTCAGATTTCACCCGACGGATGAGGAGCTGGTGAACCATTACTTGTGCAGGAAATGCGCTTCACAGCCTCTCGCTGTTCCAATCATCAGAGAAATTGATCTTTACAAATTCGATCCGTGGCAGCTCCCTGAAATGGCACTTTACGGAGAGAAGGAATGGTACTTCTTTTCGCCAAGGGACAGAAAATATCCAAACGGTTCAAGACCGAACCGGGCAGCCGGAACCGGGTACTGGAAGGCGACCGGGGCTGACAAGCACATTGGAAAGCCCAAGGCACTCGGGATTAAAAAGGCACTCGTTTTCTACGCTGGTAAAGCCCCCAAGGGAATCAAAACCAATTGGATCATGCACGAGTACCGCCTCGCCAATGTCGACCGGTCCGCCGCCACTGCCAAGAAAAATCAAAACCTGAGGCTTGATGATTGGGTACTATGCCGCATATACAACAAGAAGGGCAGCATAGAGAAATACAATGTTACAACCAAAATGACCAAATACCCAGAAATATCGGACGAGCAAAAACCTGACATGACTTTGATGCCCCCACCACCACAAGCAGCATCAAACACGCATCACATGATGGATTCGTCGATGGATTCAGTACCGAGGTTGCCACAGACGACGACGGACTACTCGAGCTGCTCGGAGCACGTGCTGTCACCGGAGGTCGCGTGGGAGAAGGAGGTCCAAAGTGAACTGAAATGGAGCAATGAATTGGAGAATTCCTTTAGTACCCTCGACAATCAGTTCCTGAATTACATGGATGGCTTCTCCGATATTATGGACCCTTTTGGGGGGCAATTGCAAATGGAGCAGCAGCCGCCCTACCAGTTGCAGGACATGTTCTCCTACCTCCACGCCCAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

307

Amino Acids

35.29

Weight (kDa)

6.26

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AccII CGCG 1 cut(s) 722
AciI CCGC 6 cut(s) 44, 409, 432, 435, 487, 872
AclWI GGATC 2 cut(s) 158, 401
AcsI RAATTY 2 cut(s) 158, 772
AcvI CACGTG 1 cut(s) 703
AfaI GTAC 6 cut(s) 212, 281, 407, 480, 654, 784
AfiI CCNNNNNNNGG 6 cut(s) 184, 276, 282, 844, 845, 886
AflIII ACRYGT 1 cut(s) 891
AgeI ACCGGT 1 cut(s) 426
AgsI TTSAA 1 cut(s) 252
AluBI AGCT 4 cut(s) 34, 79, 175, 690
AluI AGCT 4 cut(s) 34, 79, 175, 690
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 158, 401
AlwNI CAGNNNCTG 2 cut(s) 34, 802
Ama87I CYCGRG 2 cut(s) 329, 685
ApoI RAATTY 2 cut(s) 158, 772
AsiGI ACCGGT 1 cut(s) 426
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 429, 736, 835
AsuC2I CCSGG 4 cut(s) 48, 263, 277, 295
AsuHPI GGTGA 3 cut(s) 53, 94, 702
AvaI CYCGRG 2 cut(s) 329, 685
AvaII GGWCC 3 cut(s) 429, 736, 835
AxyI CCTNAGG 1 cut(s) 461
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BauI CACGAG 1 cut(s) 401
BbrPI CACGTG 1 cut(s) 703
Bbv12I GWGCWC 1 cut(s) 702
BccI CCATC 3 cut(s) 625, 637, 809
BcnI CCSGG 4 cut(s) 48, 263, 277, 295
BcoDI GTCTC 1 cut(s) 9
Bme1390I CCNGG 4 cut(s) 48, 263, 277, 295
Bme18I GGWCC 3 cut(s) 429, 736, 835
BmeT110I CYCGRG 2 cut(s) 329, 685
BmgT120I GGNCC 3 cut(s) 429, 736, 835
BmiI GGNNCC 2 cut(s) 274, 837
BmrFI CCNGG 4 cut(s) 48, 263, 277, 295
BmsI GCATC 3 cut(s) 579, 620, 631
BpmI CTGGAG 1 cut(s) 56
BpuMI CCSGG 4 cut(s) 48, 263, 277, 295
BsaAI YACGTR 1 cut(s) 703
BsaJI CCNNGG 7 cut(s) 47, 167, 224, 294, 321, 372, 656
BsaWI WCCGGW 2 cut(s) 426, 712
BsaXI ACNNNNNCTCC 4 cut(s) 707, 737, 881, 911
Bsc4I CCNNNNNNNGG 6 cut(s) 184, 276, 282, 844, 845, 886
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 287, 880
Bse21I CCTNAGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 766
BseDI CCNNGG 7 cut(s) 47, 167, 224, 294, 321, 372, 656
BseGI GGATG 2 cut(s) 76, 820
BseLI CCNNNNNNNGG 6 cut(s) 184, 276, 282, 844, 845, 886
BseMI GCAATG 1 cut(s) 766
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 2 cut(s) 287, 880
BseRI GAGGAG 3 cut(s) 24, 27, 89
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 722
Bsh1285I CGRYCG 2 cut(s) 294, 427
BshTI ACCGGT 1 cut(s) 426
BsiEI CGRYCG 2 cut(s) 294, 427
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 2 cut(s) 329, 685
BsiSI CCGG 7 cut(s) 47, 262, 270, 276, 294, 427, 713
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 6 cut(s) 184, 276, 282, 844, 845, 886
BsmAI GTCTC 1 cut(s) 9
BsmBI CGTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 242
BsoBI CYCGRG 2 cut(s) 329, 685
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 3 cut(s) 148, 163, 393
BspACI CCGC 6 cut(s) 44, 409, 432, 435, 487, 872
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 1 cut(s) 722
BspLI GGNNCC 2 cut(s) 274, 837
BspPI GGATC 2 cut(s) 158, 401
BsrDI GCAATG 1 cut(s) 766
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 2 cut(s) 287, 880
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 7 cut(s) 47, 167, 224, 294, 321, 372, 656
BssMI GATC 3 cut(s) 148, 163, 393
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 3 cut(s) 224, 321, 372
Bst2BI CACGAG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 248
BstAPI GCANNNNNTGC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 703
BstDEI CTNAG 1 cut(s) 461
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 76, 820
BstFNI CGCG 1 cut(s) 722
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 3 cut(s) 151, 166, 396
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 148, 163, 393
BstMCI CGRYCG 2 cut(s) 294, 427
BstMWI GCNNNNNNNGC 8 cut(s) 28, 31, 105, 296, 365, 440, 862, 871
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 4 cut(s) 46, 261, 275, 293
BstUI CGCG 1 cut(s) 722
Bsu36I CCTNAGG 1 cut(s) 461
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 2 cut(s) 76, 820
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
CaiI CAGNNNCTG 2 cut(s) 34, 802
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 3 cut(s) 429, 736, 835
CpoI CGGWCCG 1 cut(s) 429
Csp6I GTAC 6 cut(s) 211, 280, 406, 479, 653, 783
CspAI ACCGGT 1 cut(s) 426
CspI CGGWCCG 1 cut(s) 429
CviAII CATG 5 cut(s) 397, 580, 628, 811, 892
CviQI GTAC 6 cut(s) 211, 280, 406, 479, 653, 783
DdeI CTNAG 1 cut(s) 461
DpnI GATC 3 cut(s) 150, 165, 395
DpnII GATC 3 cut(s) 148, 163, 393
EciI GGCGGA 1 cut(s) 421
Eco130I CCWWGG 3 cut(s) 224, 321, 372
Eco47I GGWCC 3 cut(s) 429, 736, 835
Eco72I CACGTG 1 cut(s) 703
Eco81I CCTNAGG 1 cut(s) 461
Eco88I CYCGRG 2 cut(s) 329, 685
EcoRI GAATTC 1 cut(s) 772
EcoT14I CCWWGG 3 cut(s) 224, 321, 372
ErhI CCWWGG 3 cut(s) 224, 321, 372
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 5 cut(s) 400, 583, 631, 814, 895
FaqI GGGAC 1 cut(s) 242
FatI CATG 5 cut(s) 396, 579, 627, 810, 891
FblI GTMKAC 1 cut(s) 423
FokI GGATG 2 cut(s) 83, 827
GlaI GCGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 56
HapII CCGG 7 cut(s) 47, 262, 270, 276, 294, 427, 713
HhaI GCGC 1 cut(s) 110
Hin1II CATG 5 cut(s) 400, 583, 631, 814, 895
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 378, 635, 647
HpaII CCGG 7 cut(s) 47, 262, 270, 276, 294, 427, 713
HphI GGTGA 3 cut(s) 53, 94, 702
Hpy166II GTNNAC 3 cut(s) 85, 424, 746
Hpy188I TCNGA 5 cut(s) 56, 140, 562, 697, 826
Hpy188III TCNNGA 3 cut(s) 252, 331, 802
Hpy8I GTNNAC 3 cut(s) 85, 424, 746
Hpy99I CGWCG 4 cut(s) 70, 643, 676, 679
HpyAV CCTTC 4 cut(s) 196, 280, 496, 724
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 4 cut(s) 99, 400, 856, 886
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 31, 105, 296, 365, 440, 862, 871
HpyF3I CTNAG 1 cut(s) 461
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 5 cut(s) 400, 583, 631, 814, 895
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 148, 163, 393
LmnI GCTCC 5 cut(s) 76, 180, 697, 756, 862
LweI GCATC 3 cut(s) 579, 620, 631
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 3 cut(s) 39, 526, 708
MalI GATC 3 cut(s) 150, 165, 395
MboI GATC 3 cut(s) 148, 163, 393
MfeI CAATTG 3 cut(s) 388, 851, 914
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 8 cut(s) 144, 158, 388, 764, 772, 805, 851, 914
MseI TTAA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 7 cut(s) 47, 262, 270, 276, 294, 427, 713
MspR9I CCNGG 4 cut(s) 48, 263, 277, 295
MunI CAATTG 3 cut(s) 388, 851, 914
MvnI CGCG 1 cut(s) 722
MwoI GCNNNNNNNGC 8 cut(s) 28, 31, 105, 296, 365, 440, 862, 871
NciI CCSGG 4 cut(s) 48, 263, 277, 295
NdeII GATC 3 cut(s) 148, 163, 393
NlaIII CATG 5 cut(s) 400, 583, 631, 814, 895
NlaIV GGNNCC 2 cut(s) 274, 837
NmuCI GTSAC 1 cut(s) 708
NspI RCATGY 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 685
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 2 cut(s) 420, 683
PfeI GAWTC 3 cut(s) 378, 635, 647
PinAI ACCGGT 1 cut(s) 426
PmaCI CACGTG 1 cut(s) 703
PmlI CACGTG 1 cut(s) 703
Ppu21I YACGTR 1 cut(s) 703
PscI ACATGT 1 cut(s) 891
PspCI CACGTG 1 cut(s) 703
PspN4I GGNNCC 2 cut(s) 274, 837
PspPI GGNCC 3 cut(s) 429, 736, 835
PspXI VCTCGAGB 1 cut(s) 685
PstNI CAGNNNCTG 2 cut(s) 34, 802
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 6 cut(s) 212, 281, 407, 480, 654, 784
RsaNI GTAC 6 cut(s) 211, 280, 406, 479, 653, 783
Rsr2I CGGWCCG 1 cut(s) 429
RsrII CGGWCCG 1 cut(s) 429
SalI GTCGAC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 3 cut(s) 148, 163, 393
Sau96I GGNCC 3 cut(s) 429, 736, 835
ScrFI CCNGG 4 cut(s) 48, 263, 277, 295
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 3 cut(s) 579, 620, 631
Sfr274I CTCGAG 1 cut(s) 685
SinI GGWCC 3 cut(s) 429, 736, 835
SlaI CTCGAG 1 cut(s) 685
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
Sse9I AATT 8 cut(s) 144, 158, 388, 764, 772, 805, 851, 914
SsiI CCGC 6 cut(s) 44, 409, 432, 435, 487, 872
StyD4I CCNGG 4 cut(s) 46, 261, 275, 293
StyI CCWWGG 3 cut(s) 224, 321, 372
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 705
TaqI TCGA 5 cut(s) 162, 423, 641, 686, 789
TaqII GACCGA 1 cut(s) 271
TasI AATT 8 cut(s) 144, 158, 388, 764, 772, 805, 851, 914
TauI GCSGC 3 cut(s) 437, 489, 874
TfiI GAWTC 3 cut(s) 378, 635, 647
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 708
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 1 cut(s) 777
TspGWI ACGGA 4 cut(s) 83, 156, 210, 692
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 3 cut(s) 429, 736, 835
XapI RAATTY 2 cut(s) 158, 772
XceI RCATGY 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.