RchiOBHm_Chr2g0122871
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011813
Physical Location & Seq
Forward (+)
35943221 .. 35945343
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49523

Sequence Viewer

Length: 948 bp
ATGAAGGCGGAGTTGGATTTACCGGCGGGGTTCAGGTTTCACCCGACCGACGAGGAGTTGGTGAACCACTACTTGATTAAGAAATGTGCTTCCCAGAATATTTCGGTTCCCATCATCAAAGAGATTGATCTTTACAAGTTCGATCCGTGGCAGTTACCTGAAATGGCGCTTTATGGCGAGAAAGAATGGTATTTCTTTTCCCCAAGGGACAGAAAATATCCGAACGGTTCAAGGCCGAACCGGGCGGCAGGAACCGGGTACTGGAAGGCGACCGGAGCAGACAAGCACATTGGAAAGCCGAAAGCACTTGGGATCAAAAAGGCTCTTGTTTTCTATGCCGGGAAAGCCCCTAAAGGAGTCAAGACCAATTGGATCATGCATGAGTATCGACTTGCAAATGTTGATAGGTCTGCTTCCAAGAAAAACCACAACTTGAGGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAGGGTAGCATTGAGAAGTATAATACTGCTACCATGGACCGGAATAAAGTGGCAACTTACTCGGAAATAATGGACCATGAGCAGAAGCCAGTATTGAAAAACATACAGTTCAATGTAGCACCATCACAAGGTCAACAAACGCCATTAGCTGCAGTACCAGTGTCACAGCACACAGATATGTTGTCCGGAGATTATTCAGCACCGAGATTGCAGCACACAACGGACTGTTCTAGCAGCTCGGATCATGTATTCTCGCCGGAGGTTCAGAGCGAGTTCCAGTGGAGTAGTCCTGAATTCAATGAATTGGACAAGTCGATGAACTTGAACTTCCTTGATAACAATGACGAGTTCAATTACATGGATGGCTTCTCACTAGCAGATATTAGTGACCCTTTTGGCAATCAAGCTCAAGCTCAGCCTCAGTATCAAATGGACCAGCAGGACCTGTTCATGTACCTGCAAAATCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

315

Amino Acids

36.17

Weight (kDa)

6.32

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 131 3.2e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 939
AccIII TCCGGA 1 cut(s) 659
AciI CCGC 3 cut(s) 8, 26, 245
AclWI GGATC 4 cut(s) 137, 320, 380, 723
AcsI RAATTY 3 cut(s) 462, 767, 942
AfaI GTAC 3 cut(s) 260, 630, 929
AfiI CCNNNNNNNGG 3 cut(s) 261, 513, 602
AgsI TTSAA 6 cut(s) 231, 571, 586, 772, 799, 826
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 623, 711, 881, 887
AluI AGCT 4 cut(s) 623, 711, 881, 887
AlwI GGATC 4 cut(s) 137, 320, 380, 723
AlwNI CAGNNNCTG 1 cut(s) 919
Aor13HI TCCGGA 1 cut(s) 659
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 623, 685, 708
ApoI RAATTY 3 cut(s) 462, 767, 942
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 4 cut(s) 511, 547, 907, 916
AsuC2I CCSGG 3 cut(s) 242, 256, 340
AsuHPI GGTGA 2 cut(s) 32, 73
AvaII GGWCC 4 cut(s) 511, 547, 907, 916
BbvI GCAGC 3 cut(s) 610, 697, 720
BccI CCATC 3 cut(s) 119, 604, 830
BcgI CGANNNNNNTGC 4 cut(s) 368, 402, 516, 550
BcnI CCSGG 3 cut(s) 242, 256, 340
BfaI CTAG 2 cut(s) 705, 848
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 939
BisI GCNGC 4 cut(s) 246, 624, 686, 709
BlpI GCTNAGC 1 cut(s) 888
BlsI GCNGC 4 cut(s) 247, 625, 687, 710
Bme1390I CCNGG 3 cut(s) 242, 256, 340
Bme18I GGWCC 4 cut(s) 511, 547, 907, 916
BmgT120I GGNCC 4 cut(s) 511, 547, 907, 916
BmiI GGNNCC 2 cut(s) 108, 253
BmrFI CCNGG 3 cut(s) 242, 256, 340
Bpu1102I GCTNAGC 1 cut(s) 888
BpuEI CTTGAG 2 cut(s) 454, 867
BpuMI CCSGG 3 cut(s) 242, 256, 340
BsaJI CCNNGG 3 cut(s) 146, 203, 507
BsaWI WCCGGW 3 cut(s) 272, 513, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 513, 602
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 4 cut(s) 266, 563, 632, 751
BseAI TCCGGA 1 cut(s) 659
BseDI CCNNGG 3 cut(s) 146, 203, 507
BseGI GGATG 1 cut(s) 841
BseLI CCNNNNNNNGG 3 cut(s) 261, 513, 602
BseMII CTCAG 2 cut(s) 902, 908
BseNI ACTGG 4 cut(s) 266, 563, 632, 751
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 3 cut(s) 610, 697, 720
Bsh1285I CGRYCG 2 cut(s) 48, 273
BshFI GGCC 1 cut(s) 235
BsiEI CGRYCG 2 cut(s) 48, 273
BsiSI CCGG 8 cut(s) 23, 241, 255, 273, 339, 514, 660, 731
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 261, 513, 602
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 1 cut(s) 235
Bsp13I TCCGGA 1 cut(s) 659
Bsp143I GATC 5 cut(s) 127, 142, 312, 372, 715
Bsp1720I GCTNAGC 1 cut(s) 888
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 3 cut(s) 8, 26, 245
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 901, 907
BspEI TCCGGA 1 cut(s) 659
BspLI GGNNCC 2 cut(s) 108, 253
BspMAI CTGCAG 1 cut(s) 628
BspMI ACCTGC 1 cut(s) 939
BspPI GGATC 4 cut(s) 137, 320, 380, 723
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 4 cut(s) 266, 563, 632, 751
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 146, 203, 507
BssMI GATC 5 cut(s) 127, 142, 312, 372, 715
BssT1I CCWWGG 2 cut(s) 203, 507
Bst4CI ACNGT 3 cut(s) 227, 582, 701
BstDEI CTNAG 2 cut(s) 888, 894
BstDSI CCRYGG 2 cut(s) 146, 507
BstF5I GGATG 1 cut(s) 841
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 5 cut(s) 130, 145, 315, 375, 718
BstMBI GATC 5 cut(s) 127, 142, 312, 372, 715
BstMCI CGRYCG 2 cut(s) 48, 273
BstMWI GCNNNNNNNGC 2 cut(s) 275, 344
BstSCI CCNGG 3 cut(s) 240, 254, 338
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 3 cut(s) 610, 697, 720
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 2 cut(s) 146, 507
BtsCI GGATG 1 cut(s) 841
BtsIMutI CAGTG 2 cut(s) 639, 758
BveI ACCTGC 1 cut(s) 939
CaiI CAGNNNCTG 1 cut(s) 919
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 4 cut(s) 511, 547, 907, 916
Csp6I GTAC 3 cut(s) 259, 629, 928
CviAII CATG 7 cut(s) 376, 380, 508, 551, 719, 832, 925
CviQI GTAC 3 cut(s) 259, 629, 928
DdeI CTNAG 2 cut(s) 888, 894
DpnI GATC 5 cut(s) 129, 144, 314, 374, 717
DpnII GATC 5 cut(s) 127, 142, 312, 372, 715
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 203, 507
Eco47I GGWCC 4 cut(s) 511, 547, 907, 916
EcoO109I RGGNCCY 1 cut(s) 916
EcoRI GAATTC 1 cut(s) 767
EcoT14I CCWWGG 2 cut(s) 203, 507
EcoT22I ATGCAT 1 cut(s) 381
ErhI CCWWGG 2 cut(s) 203, 507
FaeI CATG 7 cut(s) 379, 383, 511, 554, 722, 835, 928
FaqI GGGAC 1 cut(s) 221
FatI CATG 7 cut(s) 375, 379, 507, 550, 718, 831, 924
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 4 cut(s) 246, 624, 686, 709
FokI GGATG 1 cut(s) 848
Fsp4HI GCNGC 4 cut(s) 246, 624, 686, 709
FspBI CTAG 2 cut(s) 705, 848
GlaI GCGC 1 cut(s) 168
GluI GCNGC 4 cut(s) 246, 624, 686, 709
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 1 cut(s) 235
HapII CCGG 8 cut(s) 23, 241, 255, 273, 339, 514, 660, 731
HhaI GCGC 1 cut(s) 169
Hin1II CATG 7 cut(s) 379, 383, 511, 554, 722, 835, 928
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 608
HindII GTYRAC 1 cut(s) 608
HinfI GANTC 1 cut(s) 357
HpaII CCGG 8 cut(s) 23, 241, 255, 273, 339, 514, 660, 731
HphI GGTGA 2 cut(s) 32, 73
Hpy166II GTNNAC 2 cut(s) 64, 608
Hpy188I TCNGA 4 cut(s) 222, 538, 715, 741
Hpy188III TCNNGA 3 cut(s) 361, 660, 764
Hpy8I GTNNAC 2 cut(s) 64, 608
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 259, 469
HpyCH4III ACNGT 3 cut(s) 227, 582, 701
HpyCH4V TGCA 5 cut(s) 379, 395, 626, 685, 934
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 344
HpyF3I CTNAG 2 cut(s) 888, 894
Hsp92II CATG 7 cut(s) 379, 383, 511, 554, 722, 835, 928
HspAI GCGC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 659
Kzo9I GATC 5 cut(s) 127, 142, 312, 372, 715
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 3 cut(s) 610, 697, 720
MaeI CTAG 2 cut(s) 705, 848
MaeIII GTNAC 3 cut(s) 153, 636, 860
MalI GATC 5 cut(s) 129, 144, 314, 374, 717
MboI GATC 5 cut(s) 127, 142, 312, 372, 715
MfeI CAATTG 1 cut(s) 367
MluCI AATT 6 cut(s) 367, 462, 767, 776, 826, 942
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 4 cut(s) 46, 429, 727, 903
Mph1103I ATGCAT 1 cut(s) 381
MroI TCCGGA 1 cut(s) 659
MseI TTAA 2 cut(s) 78, 946
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 8 cut(s) 23, 241, 255, 273, 339, 514, 660, 731
MspR9I CCNGG 3 cut(s) 242, 256, 340
MunI CAATTG 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 275, 344
NciI CCSGG 3 cut(s) 242, 256, 340
NcoI CCATGG 1 cut(s) 507
NdeII GATC 5 cut(s) 127, 142, 312, 372, 715
NlaIII CATG 7 cut(s) 379, 383, 511, 554, 722, 835, 928
NlaIV GGNNCC 2 cut(s) 108, 253
NmuCI GTSAC 2 cut(s) 636, 860
NsiI ATGCAT 1 cut(s) 381
PkrI GCNGC 4 cut(s) 247, 625, 687, 710
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 916
Psp5II RGGWCCY 1 cut(s) 916
PspN4I GGNNCC 2 cut(s) 108, 253
PspPI GGNCC 4 cut(s) 511, 547, 907, 916
PspPPI RGGWCCY 1 cut(s) 916
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 919
RsaI GTAC 3 cut(s) 260, 630, 929
RsaNI GTAC 3 cut(s) 259, 629, 928
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 2 cut(s) 78, 946
SatI GCNGC 4 cut(s) 246, 624, 686, 709
Sau3AI GATC 5 cut(s) 127, 142, 312, 372, 715
Sau96I GGNCC 4 cut(s) 511, 547, 907, 916
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 3 cut(s) 242, 256, 340
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 4 cut(s) 511, 547, 907, 916
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 433, 882
SmoI CTYRAG 2 cut(s) 433, 882
Sse9I AATT 6 cut(s) 367, 462, 767, 776, 826, 942
SsiI CCGC 3 cut(s) 8, 26, 245
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 705, 848
StyD4I CCNGG 3 cut(s) 240, 254, 338
StyI CCWWGG 2 cut(s) 203, 507
TaaI ACNGT 3 cut(s) 227, 582, 701
TaqI TCGA 3 cut(s) 141, 388, 788
TaqII GACCGA 1 cut(s) 62
TasI AATT 6 cut(s) 367, 462, 767, 776, 826, 942
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 78, 946
Tru9I TTAA 2 cut(s) 78, 946
TscAI CASTG 2 cut(s) 639, 758
TseFI GTSAC 2 cut(s) 636, 860
TseI GCWGC 3 cut(s) 623, 685, 708
Tsp45I GTSAC 2 cut(s) 636, 860
TspDTI ATGAA 4 cut(s) 17, 789, 806, 913
TspGWI ACGGA 2 cut(s) 135, 710
TspRI CASTG 2 cut(s) 639, 758
VpaK11BI GGWCC 4 cut(s) 511, 547, 907, 916
XapI RAATTY 3 cut(s) 462, 767, 942
XspI CTAG 2 cut(s) 705, 848
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.