Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

2871365 .. 2873789

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAACATGAGAAGAGTGTTTGGAGGTGTATCTACAGATTTGTTTCCGTCGCGAAGTATGTACCGGCCGCTGCAGTCTGGGGGAAACTTGGTTATGTTGTTTAAAGGATGCAGACGGTTTGTGAGAACAACGTGTCGCGTTTCGATCCCTGGTGGTTCTTTGGGGAATGAATCAAAAGCACCTCCAAGGTTTCTGAGGGATAGAAAGATTGTTCCAGATGCTGATCCCCCCAATATGGAAGATATCCACAAGTTGTATCGACTTTTTGAGCAAAGCTCGAGACTCACCATCTTGACTGGAGCTGGGGTTAGCACAGAATGTGGAATTCCGGATTACAGAAGTCCCAATGGAGCATACAGTTCTGGTTTCAAACCAATTACCCATCAGGAGTTTACTCGATCAAGCCGAGCTCGTAGGCGGTATTGGGCGAGGAGTTACGCTGGATGGAGGAGGTTCACTGCAGCACAACCAGGACCAGCTCATACTGCTTTAGCATCACTAGAAAAAGCTGGACGAATAAATTTTATGATCACACAAAATGTTGACAGGTTGCATCATCGTGCTGGGAGCGATCCACTTGAATTACATGGCACAGTATATACTGTTATGTGCTTAGAGTGCGGCTTCTCTTTTCCCCGAGACTTGTTTCAGGATCAGCTAAAAGCAATCAATCCTAAGTGGGCTGAAGCTATAGAAAGTATTGATCATGGAGATCCAGGATCAGAGAAGAGCTTTGGCATGAAACAAAGGCCTGATGGTGATATCGAGATTGACGAAAAGTTTTGGGAAGAGGGTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGATGTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAGCAATGGAAGTTGCAAAACAGAGCGATGCATTCCTCGTGTTGGGTTCATCCTTAATGACAATGTCTGCTTTTCGCCTTTGCAGAGCGGCTCATGAGGCTGGTGCTATGACCGCAATTGTAAATATAGGCGAAACAAGAGCTGATGACATTGTTCCATTGAAAATCAATGCTAGGGTTGGTGAGATATTGCACAGAGTTCTTGACGTGGGATCGCTCAGTGTCCCAGCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

373

Amino Acids

41.54

Weight (kDa)

9.08

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIR2	PF02146	100 - 315	2.1e-39	Sir2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	974
AccII	CGCG	2 cut(s)	52, 138
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	5 cut(s)	68, 418, 621, 974, 999
AclWI	GGATC	7 cut(s)	139, 218, 566, 660, 707, 727, 1105
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	324, 520
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	235, 928
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	370, 581, 1048
AjiI	CACGTC	1 cut(s)	1093
AjnI	CCWGG	3 cut(s)	148, 469, 715
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	3 cut(s)	274, 633, 852
AlwI	GGATC	7 cut(s)	139, 218, 566, 660, 707, 727, 1105
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	2 cut(s)	277, 636
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	2 cut(s)	65, 749
ApeKI	GCWGC	2 cut(s)	70, 461
ApoI	RAATTY	2 cut(s)	324, 520
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	3 cut(s)	277, 770, 1079
AvaI	CYCGRG	2 cut(s)	277, 636
AvaII	GGWCC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	923
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	57, 473
BccI	CCATC	4 cut(s)	296, 390, 438, 749
BciT130I	CCWGG	3 cut(s)	150, 471, 717
BclI	TGATCA	2 cut(s)	528, 703
BcoDI	GTCTC	3 cut(s)	274, 633, 852
BfaI	CTAG	3 cut(s)	500, 1059, 1120
BfmI	CTRYAG	4 cut(s)	33, 71, 459, 690
BisI	GCNGC	5 cut(s)	68, 71, 462, 622, 975
BlsI	GCNGC	5 cut(s)	69, 72, 463, 623, 976
Bme1390I	CCNGG	3 cut(s)	150, 471, 717
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	2 cut(s)	277, 636
BmgBI	CACGTC	1 cut(s)	1093
BmgT120I	GGNCC	1 cut(s)	473
BmrFI	CCNGG	3 cut(s)	150, 471, 717
BmsI	GCATC	5 cut(s)	98, 208, 503, 562, 904
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	870
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	148, 185
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 928
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	301, 806
Bse3DI	GCAATG	1 cut(s)	897
Bse8I	GATNNNNATC	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	3 cut(s)	150, 471, 717
BseDI	CCNNGG	2 cut(s)	148, 185
BseGI	GGATG	4 cut(s)	113, 449, 864, 935
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	235, 928
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	2 cut(s)	185, 1117
BseNI	ACTGG	2 cut(s)	301, 806
BseRI	GAGGAG	2 cut(s)	445, 463
BseX3I	CGGCCG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	57, 473
BseYI	CCCAGC	3 cut(s)	302, 563, 1111
Bsh1236I	CGCG	2 cut(s)	52, 138
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	67, 751
BsiEI	CGRYCG	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	2 cut(s)	277, 636
BsiSI	CCGG	2 cut(s)	64, 329
BslFI	GGGAC	2 cut(s)	327, 1094
BslI	CCNNNNNNNGG	2 cut(s)	235, 928
BsmAI	GTCTC	3 cut(s)	274, 633, 852
BsmFI	GGGAC	2 cut(s)	327, 1094
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	2 cut(s)	67, 751
BsoBI	CYCGRG	2 cut(s)	277, 636
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp13I	TCCGGA	1 cut(s)	328
Bsp68I	TCGCGA	1 cut(s)	52
BspACI	CCGC	5 cut(s)	68, 418, 621, 974, 999
BspANI	GGCC	2 cut(s)	67, 751
BspCNI	CTCAG	2 cut(s)	186, 1116
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	52, 138
BspHI	TCATGA	1 cut(s)	979
BspMAI	CTGCAG	2 cut(s)	75, 463
BspPI	GGATC	7 cut(s)	139, 218, 566, 660, 707, 727, 1105
BspQI	GCTCTTC	1 cut(s)	722
BsrBI	CCGCTC	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	897
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	301, 806
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	148, 185
BssSI	CACGAG	1 cut(s)	923
BssT1I	CCWWGG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	923
Bst2UI	CCWGG	3 cut(s)	150, 471, 717
Bst4CI	ACNGT	4 cut(s)	117, 359, 595, 604
Bst6I	CTCTTC	3 cut(s)	7, 722, 783
BstDEI	CTNAG	4 cut(s)	194, 613, 675, 1103
BstF5I	GGATG	4 cut(s)	113, 449, 864, 935
BstFNI	CGCG	2 cut(s)	52, 138
BstMAI	GTCTC	3 cut(s)	274, 633, 852
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 618, 887, 983, 998
BstNI	CCWGG	3 cut(s)	150, 471, 717
BstSCI	CCNGG	3 cut(s)	148, 469, 715
BstSFI	CTRYAG	4 cut(s)	33, 71, 459, 690
BstUI	CGCG	2 cut(s)	52, 138
BstV1I	GCAGC	2 cut(s)	57, 473
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	67, 751
BtgZI	GCGATG	1 cut(s)	927
BtrI	CACGTC	1 cut(s)	1093
BtsCI	GGATG	4 cut(s)	113, 449, 864, 935
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	456, 1111
BtuMI	TCGCGA	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	979
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	5 cut(s)	7, 587, 707, 739, 980
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	4 cut(s)	194, 613, 675, 1103
DraI	TTTAAA	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	65
EagI	CGGCCG	1 cut(s)	65
Eam1104I	CTCTTC	3 cut(s)	7, 722, 783
EarI	CTCTTC	3 cut(s)	7, 722, 783
Ecl136II	GAGCTC	1 cut(s)	410
EclXI	CGGCCG	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	412
Eco32I	GATATC	2 cut(s)	244, 763
Eco47I	GGWCC	1 cut(s)	473
Eco52I	CGGCCG	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	705
Eco88I	CYCGRG	2 cut(s)	277, 636
EcoICRI	GAGCTC	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	324
EcoRII	CCWGG	3 cut(s)	148, 469, 715
EcoRV	GATATC	2 cut(s)	244, 763
EcoT14I	CCWWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	5 cut(s)	10, 590, 710, 742, 983
FaqI	GGGAC	2 cut(s)	327, 1094
FatI	CATG	5 cut(s)	6, 586, 706, 738, 979
FbaI	TGATCA	2 cut(s)	528, 703
Fnu4HI	GCNGC	5 cut(s)	68, 71, 462, 622, 975
FokI	GGATG	4 cut(s)	120, 456, 851, 922
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	5 cut(s)	68, 71, 462, 622, 975
FspBI	CTAG	3 cut(s)	500, 1059, 1120
GluI	GCNGC	5 cut(s)	68, 71, 462, 622, 975
GsaI	CCCAGC	3 cut(s)	306, 567, 1115
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	67, 751
HapII	CCGG	2 cut(s)	64, 329
Hin1II	CATG	5 cut(s)	10, 590, 710, 742, 983
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	3 cut(s)	170, 282, 828
HpaII	CCGG	2 cut(s)	64, 329
HphI	GGTGA	3 cut(s)	277, 770, 1079
Hpy166II	GTNNAC	3 cut(s)	393, 456, 544
Hpy188I	TCNGA	2 cut(s)	195, 724
Hpy8I	GTNNAC	3 cut(s)	393, 456, 544
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	865
HpyCH4III	ACNGT	4 cut(s)	117, 359, 595, 604
HpyCH4IV	ACGT	2 cut(s)	131, 1092
HpyCH4V	TGCA	9 cut(s)	73, 111, 461, 553, 822, 902, 917, 969, 1078
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 618, 887, 983, 998
HpyF3I	CTNAG	4 cut(s)	194, 613, 675, 1103
HpySE526I	ACGT	2 cut(s)	131, 1092
Hsp92II	CATG	5 cut(s)	10, 590, 710, 742, 983
Kpn2I	TCCGGA	1 cut(s)	328
Ksp22I	TGATCA	2 cut(s)	528, 703
LguI	GCTCTTC	1 cut(s)	722
LmnI	GCTCC	3 cut(s)	299, 350, 567
Lsp1109I	GCAGC	2 cut(s)	57, 473
LweI	GCATC	5 cut(s)	98, 208, 503, 562, 904
MaeI	CTAG	3 cut(s)	500, 1059, 1120
MaeII	ACGT	2 cut(s)	131, 1092
MaeIII	GTNAC	1 cut(s)	434
MbiI	CCGCTC	1 cut(s)	974
MboII	GAAGA	4 cut(s)	24, 251, 739, 800
MfeI	CAATTG	1 cut(s)	1002
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	6 cut(s)	324, 375, 520, 581, 846, 1002
MlyI	GAGTC	2 cut(s)	276, 837
MnlI	CCTC	9 cut(s)	17, 189, 192, 423, 441, 444, 784, 932, 976
Mph1103I	ATGCAT	1 cut(s)	919
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	2 cut(s)	102, 941
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	64, 329
MspR9I	CCNGG	3 cut(s)	150, 471, 717
MunI	CAATTG	1 cut(s)	1002
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	3 cut(s)	150, 471, 717
MvnI	CGCG	2 cut(s)	52, 138
MwoI	GCNNNNNNNGC	5 cut(s)	485, 618, 887, 983, 998
NlaIII	CATG	5 cut(s)	10, 590, 710, 742, 983
NmeAIII	GCCGAG	1 cut(s)	431
NruI	TCGCGA	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	919
PaeR7I	CTCGAG	1 cut(s)	277
PagI	TCATGA	1 cut(s)	979
PceI	AGGCCT	1 cut(s)	751
PciSI	GCTCTTC	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	2 cut(s)	403, 771
PctI	GAATGC	1 cut(s)	917
PfeI	GAWTC	1 cut(s)	170
PflFI	GACNNNGTC	1 cut(s)	949
PfoI	TCCNGGA	1 cut(s)	715
PkrI	GCNGC	5 cut(s)	69, 72, 463, 623, 976
PleI	GAGTC	2 cut(s)	276, 836
PpsI	GAGTC	2 cut(s)	276, 836
Psp124BI	GAGCTC	1 cut(s)	412
Psp6I	CCWGG	3 cut(s)	148, 469, 715
PspFI	CCCAGC	3 cut(s)	302, 563, 1111
PspGI	CCWGG	3 cut(s)	148, 469, 715
PspPI	GGNCC	1 cut(s)	473
PstI	CTGCAG	2 cut(s)	75, 463
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	712
PsyI	GACNNNGTC	1 cut(s)	949
RruI	TCGCGA	1 cut(s)	52
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	722
SaqAI	TTAA	2 cut(s)	102, 941
SatI	GCNGC	5 cut(s)	68, 71, 462, 622, 975
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	2 cut(s)	276, 837
ScrFI	CCNGG	3 cut(s)	150, 471, 717
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	5 cut(s)	98, 208, 503, 562, 904
SfcI	CTRYAG	4 cut(s)	33, 71, 459, 690
Sfr274I	CTCGAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	277, 885
SmoI	CTYRAG	2 cut(s)	277, 885
Sse9I	AATT	6 cut(s)	324, 375, 520, 581, 846, 1002
SseBI	AGGCCT	1 cut(s)	751
SsiI	CCGC	5 cut(s)	68, 418, 621, 974, 999
SspMI	CTAG	3 cut(s)	500, 1059, 1120
SstI	GAGCTC	1 cut(s)	412
StuI	AGGCCT	1 cut(s)	751
StyD4I	CCNGG	3 cut(s)	148, 469, 715
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	4 cut(s)	117, 359, 595, 604
TaiI	ACGT	2 cut(s)	134, 1095
TaqI	TCGA	5 cut(s)	143, 259, 278, 397, 765
TasI	AATT	6 cut(s)	324, 375, 520, 581, 846, 1002
TauI	GCSGC	3 cut(s)	70, 624, 977
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	102, 941
Tru9I	TTAA	2 cut(s)	102, 941
TscAI	CASTG	2 cut(s)	463, 1111
TseI	GCWGC	2 cut(s)	70, 461
TspDTI	ATGAA	5 cut(s)	17, 183, 755, 788, 924
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	463, 1111
Tth111I	GACNNNGTC	1 cut(s)	949
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	2 cut(s)	324, 520
XhoI	CTCGAG	1 cut(s)	277
XspI	CTAG	3 cut(s)	500, 1059, 1120
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.