Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

16776415 .. 16782425

Gene Structure 6011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24990.t13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCAGCCATTCTCATTCGCTCACCTTTCTTTTCCGGTCCCAGAAAGGCTAGAGAAATGAGGAATATCATGACAGGCAAGTCTGCTATCGTTACACCCAAGTTTATTCAATTTAGTAGCACCAATTTGCGATTACCAAGGAGTCAAAGAAGATTCATTTCTTTTCGTGGCTTGTTGAATTCTGTCCAAGCCTCAGCCCAAATATCTGTCCCAGGCACTTCATCGACGAGGGAAGAAAAAGTGCCTTTGAACTTCTTGAGGGACAAGAAGGTGGCTCCGGATTCAGATCCCCCTAGCTTGCAAGATGTCAACCTTTTGTATCAATTTTTCGATCAAAGTACCAAGCTAGTGGTATTGACTGGAGCTGGAATTAGCACAGAATGTGGTATTCCCGACTACAGAAGTCCAAATGGAGCTTACAGTTCTGGTTTCAAACCAATTACCCATCAGGAATTTCTCCGCTCTAGTCGGGCTCGTAGGCGTTATTGGGCAAGGAGTTATGCTGGGTGGAGACGGTTTAATGCTGCGCAGCCCAGTGCAGCTCATACTGCTTTATCATCTCTAGAAAAAGCTGGTTGGATTGACTTGATGATTACACAAAATGTTGATAGGTTGCATCACCGTGCTGGTAGCAATCCAGTTGAATTGCATGGAACTGTGTATTCCGTGATTTGTGTAGATTGTGGTTTATCCTTTTCCCGGCAAATATTTCAGGATCAACTTAAGGCCCTTGATCCAAAGTGGGCAGCAGCAATTGAAAGATTGGACTATGGCAACCCTGGATCAGACAAGAGCTTTGGTATGACGCAAAGGCCTGATGGTGACATTGAGATTGATGAAAAATTTTGGGAGGAGGATTTTCACATCCCTACATGCCAAAAGTGCAATGGAGTGCTGAAGCCTGATGTTGTCTTCTTTGGTGACAATGTCCCCAAGGACAGAGCTGCTAAGGTAATCCAAGCTGCAAAAGAATGTGATGCTTTTCTTGTACTAGGATCATCTGTAATGACCTTTTCTGCCTTTCGACTTGTCAGAGCTGCACATGAGGCAGGTGCTGCCACTGCAATTGTAAATGTTGGAGTGACTCGAGCTGATGATTTTGTACCTTTGAAAATCAATGCTCGACTAGGAGAGATTTTGCCAAGAGTGCTTAACATGGGATCCCTCAGCGTCCCTGCGTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

396

Amino Acids

43.73

Weight (kDa)

9.58

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIR2	PF02146	75 - 290	1.3e-41	Sir2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1040
AasI	GACNNNNNNGTC	1 cut(s)	79
Acc16I	TGCGCA	1 cut(s)	528
Acc36I	ACCTGC	1 cut(s)	1040
AccBSI	CCGCTC	1 cut(s)	462
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	7 cut(s)	281, 723, 728, 790, 1003, 1155, 1168
AcsI	RAATTY	3 cut(s)	178, 452, 842
AcuI	CTGAAG	1 cut(s)	917
AfaI	GTAC	3 cut(s)	340, 990, 1104
AfiI	CCNNNNNNNGG	1 cut(s)	699
AflII	CTTAAG	1 cut(s)	722
AgsI	TTSAA	7 cut(s)	110, 178, 250, 433, 644, 758, 1111
AjnI	CCWGG	3 cut(s)	211, 778, 1181
Alw26I	GTCTC	1 cut(s)	505
AlwI	GGATC	7 cut(s)	281, 723, 728, 790, 1003, 1155, 1168
AlwNI	CAGNNNCTG	1 cut(s)	1055
Ama87I	CYCGRG	1 cut(s)	1086
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	2 cut(s)	726, 812
ApoI	RAATTY	3 cut(s)	178, 452, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	2 cut(s)	38, 727
AsuC2I	CCSGG	1 cut(s)	700
AsuHPI	GGTGA	4 cut(s)	15, 611, 833, 932
AvaI	CYCGRG	1 cut(s)	1086
AvaII	GGWCC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	1160
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	904
BbvCI	CCTCAGC	2 cut(s)	193, 1166
BccI	CCATC	2 cut(s)	453, 812
BciT130I	CCWGG	3 cut(s)	213, 780, 1183
BcnI	CCSGG	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	7 cut(s)	51, 294, 347, 465, 563, 992, 1127
BfmI	CTRYAG	1 cut(s)	397
BfrI	CTTAAG	1 cut(s)	722
BfuAI	ACCTGC	1 cut(s)	1040
Bme1390I	CCNGG	4 cut(s)	213, 700, 780, 1183
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	1086
BmgT120I	GGNCC	2 cut(s)	38, 727
BmiI	GGNNCC	3 cut(s)	40, 276, 1162
BmrFI	CCNGG	4 cut(s)	213, 700, 780, 1183
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	625, 967
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	904
BpmI	CTGGAG	1 cut(s)	381
Bpu10I	CCTNAGC	3 cut(s)	193, 948, 1166
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	137, 211, 778, 933
BsaWI	WCCGGW	2 cut(s)	35, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
Bse1I	ACTGG	3 cut(s)	364, 534, 638
Bse3DI	GCAATG	1 cut(s)	892
Bse8I	GATNNNNATC	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	3 cut(s)	213, 780, 1183
BseDI	CCNNGG	4 cut(s)	137, 211, 778, 933
BseGI	GGATG	1 cut(s)	864
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	892
BseMII	CTCAG	2 cut(s)	207, 1180
BseNI	ACTGG	3 cut(s)	364, 534, 638
BseRI	GAGGAG	1 cut(s)	866
BseYI	CCCAGC	1 cut(s)	503
BsgI	GTGCAG	2 cut(s)	558, 1023
BshFI	GGCC	2 cut(s)	728, 814
BsiHKCI	CYCGRG	1 cut(s)	1086
BsiSI	CCGG	3 cut(s)	36, 278, 700
BslFI	GGGAC	5 cut(s)	24, 194, 275, 914, 1157
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmAI	GTCTC	1 cut(s)	505
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	5 cut(s)	24, 194, 275, 914, 1157
BsnI	GGCC	2 cut(s)	728, 814
BsoBI	CYCGRG	1 cut(s)	1086
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	7 cut(s)	286, 331, 715, 733, 782, 995, 1160
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	2 cut(s)	728, 814
BspCNI	CTCAG	2 cut(s)	206, 1179
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	40, 276, 1162
BspMI	ACCTGC	1 cut(s)	1040
BspPI	GGATC	7 cut(s)	281, 723, 728, 790, 1003, 1155, 1168
BspTI	CTTAAG	1 cut(s)	722
BsrBI	CCGCTC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	892
BsrI	ACTGG	3 cut(s)	364, 534, 638
BssECI	CCNNGG	4 cut(s)	137, 211, 778, 933
BssMI	GATC	7 cut(s)	286, 331, 715, 733, 782, 995, 1160
BssT1I	CCWWGG	2 cut(s)	137, 933
Bst2UI	CCWGG	3 cut(s)	213, 780, 1183
Bst4CI	ACNGT	4 cut(s)	422, 516, 623, 658
BstAFI	CTTAAG	1 cut(s)	722
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	3 cut(s)	193, 948, 1166
BstF5I	GGATG	1 cut(s)	864
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	7 cut(s)	289, 334, 718, 736, 785, 998, 1163
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	7 cut(s)	286, 331, 715, 733, 782, 995, 1160
BstMWI	GCNNNNNNNGC	6 cut(s)	548, 882, 1046, 1055, 1061, 1147
BstNI	CCWGG	3 cut(s)	213, 780, 1183
BstNSI	RCATGY	1 cut(s)	876
BstSCI	CCNGG	4 cut(s)	211, 698, 778, 1181
BstSFI	CTRYAG	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	904
BstX2I	RGATCY	2 cut(s)	286, 1160
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	2 cut(s)	286, 1160
BsuRI	GGCC	2 cut(s)	728, 814
BtsCI	GGATG	1 cut(s)	864
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	2 cut(s)	541, 1059
BveI	ACCTGC	1 cut(s)	1040
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	1055
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	38, 727
CseI	GACGC	3 cut(s)	814, 1159, 1167
Csp6I	GTAC	3 cut(s)	339, 989, 1103
CspCI	CAANNNNNGTGG	2 cut(s)	1048, 1083
CviAII	CATG	5 cut(s)	70, 650, 873, 1043, 1156
CviQI	GTAC	3 cut(s)	339, 989, 1103
DdeI	CTNAG	3 cut(s)	193, 948, 1166
DpnI	GATC	7 cut(s)	288, 333, 717, 735, 784, 997, 1162
DpnII	GATC	7 cut(s)	286, 331, 715, 733, 782, 995, 1160
DrdI	GACNNNNNNGTC	1 cut(s)	79
DseDI	GACNNNNNNGTC	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	137, 933
Eco147I	AGGCCT	1 cut(s)	814
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	917
Eco88I	CYCGRG	1 cut(s)	1086
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	211, 778, 1181
EcoT14I	CCWWGG	2 cut(s)	137, 933
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	2 cut(s)	137, 933
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	5 cut(s)	73, 653, 876, 1046, 1159
FaiI	YATR	9 cut(s)	71, 501, 546, 651, 771, 803, 874, 1044, 1157
FaqI	GGGAC	5 cut(s)	24, 194, 275, 914, 1157
FatI	CATG	5 cut(s)	69, 649, 872, 1042, 1155
FokI	GGATG	1 cut(s)	851
FriOI	GRGCYC	1 cut(s)	475
FspBI	CTAG	7 cut(s)	51, 294, 347, 465, 563, 992, 1127
FspI	TGCGCA	1 cut(s)	528
GlaI	GCGC	1 cut(s)	528
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	728, 814
HapII	CCGG	3 cut(s)	36, 278, 700
HgaI	GACGC	3 cut(s)	814, 1159, 1167
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	5 cut(s)	73, 653, 876, 1046, 1159
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	142, 153, 281, 1084
HpaII	CCGG	3 cut(s)	36, 278, 700
HphI	GGTGA	4 cut(s)	15, 611, 833, 932
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	286, 787, 1034
Hpy188III	TCNNGA	7 cut(s)	70, 256, 278, 392, 449, 563, 713
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	4 cut(s)	422, 516, 623, 658
HpyCH4V	TGCA	8 cut(s)	301, 539, 616, 649, 885, 965, 1040, 1064
HpyF10VI	GCNNNNNNNGC	6 cut(s)	548, 882, 1046, 1055, 1061, 1147
HpyF3I	CTNAG	3 cut(s)	193, 948, 1166
Hsp92II	CATG	5 cut(s)	73, 653, 876, 1046, 1159
HspAI	GCGC	1 cut(s)	527
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	7 cut(s)	286, 331, 715, 733, 782, 995, 1160
LmnI	GCTCC	3 cut(s)	280, 362, 413
LweI	GCATC	2 cut(s)	625, 967
MaeI	CTAG	7 cut(s)	51, 294, 347, 465, 563, 992, 1127
MaeIII	GTNAC	4 cut(s)	91, 821, 920, 1081
MalI	GATC	7 cut(s)	288, 333, 717, 735, 784, 997, 1162
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	7 cut(s)	286, 331, 715, 733, 782, 995, 1160
MboII	GAAGA	3 cut(s)	162, 245, 904
MfeI	CAATTG	2 cut(s)	753, 1065
MflI	RGATCY	2 cut(s)	286, 1160
MhlI	GDGCHC	1 cut(s)	475
MlyI	GAGTC	2 cut(s)	151, 1078
MmeI	TCCRAC	2 cut(s)	557, 1057
MnlI	CCTC	8 cut(s)	54, 202, 222, 252, 844, 847, 1039, 1175
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	3 cut(s)	519, 723, 1152
MslI	CAYNNNNRTG	1 cut(s)	621
MspCI	CTTAAG	1 cut(s)	722
MspI	CCGG	3 cut(s)	36, 278, 700
MspR9I	CCNGG	4 cut(s)	213, 700, 780, 1183
MunI	CAATTG	2 cut(s)	753, 1065
MvaI	CCWGG	3 cut(s)	213, 780, 1183
MwoI	GCNNNNNNNGC	6 cut(s)	548, 882, 1046, 1055, 1061, 1147
NciI	CCSGG	1 cut(s)	700
NdeII	GATC	7 cut(s)	286, 331, 715, 733, 782, 995, 1160
NlaIII	CATG	5 cut(s)	73, 653, 876, 1046, 1159
NlaIV	GGNNCC	3 cut(s)	40, 276, 1162
NmuCI	GTSAC	3 cut(s)	821, 920, 1081
NsbI	TGCGCA	1 cut(s)	528
NspI	RCATGY	1 cut(s)	876
PaeR7I	CTCGAG	1 cut(s)	1086
PagI	TCATGA	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	1040
PceI	AGGCCT	1 cut(s)	814
PfeI	GAWTC	2 cut(s)	153, 281
PflFI	GACNNNGTC	1 cut(s)	926
PleI	GAGTC	2 cut(s)	150, 1078
PpsI	GAGTC	2 cut(s)	150, 1078
Psp6I	CCWGG	3 cut(s)	211, 778, 1181
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	3 cut(s)	211, 778, 1181
PspN4I	GGNNCC	3 cut(s)	40, 276, 1162
PspPI	GGNCC	2 cut(s)	38, 727
PspXI	VCTCGAGB	1 cut(s)	1086
PstNI	CAGNNNCTG	1 cut(s)	1055
PsuI	RGATCY	2 cut(s)	286, 1160
PsyI	GACNNNGTC	1 cut(s)	926
RsaI	GTAC	3 cut(s)	340, 990, 1104
RsaNI	GTAC	3 cut(s)	339, 989, 1103
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	519, 723, 1152
Sau3AI	GATC	7 cut(s)	286, 331, 715, 733, 782, 995, 1160
Sau96I	GGNCC	2 cut(s)	38, 727
SchI	GAGTC	2 cut(s)	151, 1078
ScrFI	CCNGG	4 cut(s)	213, 700, 780, 1183
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	2 cut(s)	625, 967
SfcI	CTRYAG	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	1086
SinI	GGWCC	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	3 cut(s)	256, 722, 1086
SmoI	CTYRAG	3 cut(s)	256, 722, 1086
SseBI	AGGCCT	1 cut(s)	814
SsiI	CCGC	1 cut(s)	460
SspI	AATATT	1 cut(s)	708
SspMI	CTAG	7 cut(s)	51, 294, 347, 465, 563, 992, 1127
StuI	AGGCCT	1 cut(s)	814
StyD4I	CCNGG	4 cut(s)	211, 698, 778, 1181
StyI	CCWWGG	2 cut(s)	137, 933
TaaI	ACNGT	4 cut(s)	422, 516, 623, 658
TaqI	TCGA	5 cut(s)	224, 330, 1024, 1087, 1123
TatI	WGTACW	1 cut(s)	988
TfiI	GAWTC	2 cut(s)	153, 281
Tru1I	TTAA	3 cut(s)	519, 723, 1152
Tru9I	TTAA	3 cut(s)	519, 723, 1152
TscAI	CASTG	2 cut(s)	541, 1066
TseFI	GTSAC	3 cut(s)	821, 920, 1081
Tsp45I	GTSAC	3 cut(s)	821, 920, 1081
TspDTI	ATGAA	3 cut(s)	145, 210, 852
TspGWI	ACGGA	1 cut(s)	655
TspRI	CASTG	2 cut(s)	541, 1066
Tth111I	GACNNNGTC	1 cut(s)	926
Vha464I	CTTAAG	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	3 cut(s)	178, 452, 842
XbaI	TCTAGA	1 cut(s)	562
XceI	RCATGY	1 cut(s)	876
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XhoI	CTCGAG	1 cut(s)	1086
XspI	CTAG	7 cut(s)	51, 294, 347, 465, 563, 992, 1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.