Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

24644143 .. 24648740

Gene Structure 4598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0240200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTTGTTCAAACTACCTGTATGTATTTACAAATTTATGTGTGCAGGAGGGCTGAGAAGGTGGTACAATCCAGAATGGTTTTTGGAGAAGATACCATCATCTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGTTACTAGATGATAGCAGAACCCATGGGAGATTAACTATGTTGTTGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCCGGAGGATTGGACTCGTCACTCGTTACTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGCATTGGCTTAGAGGGTTCTCCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCAGGAAGGCATAGATGCACTTGAAGAAGTTGTCTACCATATTGAGACATATGATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAGATAAAATCTCTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAAGATCAGGCCTGATCTTGGGAGAATTGAGAAGTGGGTCTTGCGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAGGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGTTGGATTGACGGCTTGAAAGATCATGCCAACAAACAAGTAACAGATTCAATGCTGATGAACGCAAGCTTTGTCTACCCTGAAAACACTCCGACTACAAAAGAAGGATACTACTATAGGACTATCTTTGAGAAATATTTTCCAAAGAATGCTGCGAGATCGACAGTTCCCGGTGGTCCAAGTGCGGCATGCAGCACAGCAAAAGCTGTGGAGTGGGATGCGGAATGGTCCAAGAACCCTGATCCATCTGGTCATGCTGCACTTGGTATACATGCAGCTGCGTATGAGGAATCCAAAGATGTGAAGACTGGAAGTCTTGTGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCCGCAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

386

Amino Acids

43.39

Weight (kDa)

6.68

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	63 - 209	1.1e-50	Asparagine synthase
Asn_synthase	PF00733	220 - 312	1.7e-12	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	610
AccI	GTMKAC	3 cut(s)	459, 855, 1048
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	236
AciI	CCGC	3 cut(s)	965, 1001, 1149
AclWI	GGATC	2 cut(s)	104, 1016
AcoI	YGGCCR	1 cut(s)	1146
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	3 cut(s)	65, 216, 743
AfiI	CCNNNNNNNGG	1 cut(s)	665
AgsI	TTSAA	4 cut(s)	10, 449, 799, 831
AhdI	GACNNNNNGTC	1 cut(s)	1092
AjiI	CACGTC	1 cut(s)	305
AleI	CACNNNNGTG	1 cut(s)	307
AluBI	AGCT	4 cut(s)	299, 849, 986, 1058
AluI	AGCT	4 cut(s)	299, 849, 986, 1058
Alw26I	GTCTC	3 cut(s)	193, 464, 525
AlwI	GGATC	2 cut(s)	104, 1016
AlwNI	CAGNNNCTG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	236
AoxI	GGCC	2 cut(s)	656, 1146
ApeKI	GCWGC	7 cut(s)	299, 368, 932, 972, 1037, 1055, 1058
ApoI	RAATTY	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	3 cut(s)	553, 956, 1008
AsuC2I	CCSGG	1 cut(s)	951
AsuHPI	GGTGA	2 cut(s)	575, 623
AvaII	GGWCC	3 cut(s)	553, 956, 1008
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BanI	GGYRCC	1 cut(s)	610
BauI	CACGAG	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	1091
BbvI	GCAGC	7 cut(s)	286, 380, 919, 984, 1024, 1045, 1067
BccI	CCATC	3 cut(s)	103, 761, 1033
BceAI	ACGGC	1 cut(s)	808
BciVI	GTATCC	1 cut(s)	881
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	1 cut(s)	951
BcoDI	GTCTC	3 cut(s)	193, 464, 525
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	895
BfuI	GTATCC	1 cut(s)	881
BisI	GCNGC	9 cut(s)	300, 369, 933, 966, 973, 1038, 1056, 1059, 1149
BlsI	GCNGC	9 cut(s)	301, 370, 934, 967, 974, 1039, 1057, 1060, 1150
Bme1390I	CCNGG	1 cut(s)	951
Bme18I	GGWCC	3 cut(s)	553, 956, 1008
BmeRI	GACNNNNNGTC	1 cut(s)	1092
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	3 cut(s)	553, 956, 1008
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	1 cut(s)	951
BmsI	GCATC	2 cut(s)	430, 988
BoxI	GACNNNNGTC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	1091
BplI	GAGNNNNNCTC	2 cut(s)	1093, 1125
BpmI	CTGGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	951
BsaBI	GATNNNNATC	1 cut(s)	708
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	1093
Bse8I	GATNNNNATC	1 cut(s)	708
BseAI	TCCGGA	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	1003
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	1093
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	7 cut(s)	286, 380, 919, 984, 1024, 1045, 1067
BsgI	GTGCAG	3 cut(s)	63, 285, 1023
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	658, 1148
BshNI	GGYRCC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	237, 951
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	3 cut(s)	193, 464, 525
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	2 cut(s)	658, 1148
Bsp13I	TCCGGA	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	7 cut(s)	109, 651, 661, 709, 802, 938, 1021
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	3 cut(s)	965, 1001, 1149
BspANI	GGCC	2 cut(s)	658, 1148
BspCNI	CTCAG	1 cut(s)	45
BspEI	TCCGGA	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	612
BspPI	GGATC	2 cut(s)	104, 1016
BspT107I	GGYRCC	1 cut(s)	610
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	1093
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	7 cut(s)	109, 651, 661, 709, 802, 938, 1021
BssNAI	GTATAC	1 cut(s)	1049
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	163
Bst1107I	GTATAC	1 cut(s)	1049
Bst2BI	CACGAG	1 cut(s)	407
Bst4CI	ACNGT	4 cut(s)	424, 490, 782, 946
BstAUI	TGTACA	1 cut(s)	741
BstC8I	GCNNGC	3 cut(s)	499, 847, 970
BstDEI	CTNAG	2 cut(s)	53, 343
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	1003
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	7 cut(s)	112, 654, 664, 712, 805, 941, 1024
BstMAI	GTCTC	3 cut(s)	193, 464, 525
BstMBI	GATC	7 cut(s)	109, 651, 661, 709, 802, 938, 1021
BstMWI	GCNNNNNNNGC	1 cut(s)	754
BstNSI	RCATGY	3 cut(s)	645, 972, 1055
BstPAI	GACNNNNGTC	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	949
BstSFI	CTRYAG	1 cut(s)	895
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	7 cut(s)	286, 380, 919, 984, 1024, 1045, 1067
BstV2I	GAAGAC	1 cut(s)	1091
BstZ17I	GTATAC	1 cut(s)	1049
BsuI	GTATCC	1 cut(s)	881
BsuRI	GGCC	2 cut(s)	658, 1148
BtgI	CCRYGG	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	1003
BtsIMutI	CAGTG	2 cut(s)	314, 486
Cac8I	GCNNGC	3 cut(s)	499, 847, 970
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	3 cut(s)	553, 956, 1008
Csp6I	GTAC	3 cut(s)	64, 215, 742
CspCI	CAANNNNNGTGG	2 cut(s)	969, 1004
CviAII	CATG	6 cut(s)	164, 642, 806, 969, 1034, 1052
CviQI	GTAC	3 cut(s)	64, 215, 742
DdeI	CTNAG	2 cut(s)	53, 343
DpnI	GATC	7 cut(s)	111, 653, 663, 711, 804, 940, 1023
DpnII	GATC	7 cut(s)	109, 651, 661, 709, 802, 938, 1021
DraI	TTTAAA	1 cut(s)	363
DriI	GACNNNNNGTC	1 cut(s)	1092
EaeI	YGGCCR	1 cut(s)	1146
Eam1105I	GACNNNNNGTC	1 cut(s)	1092
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	658
Eco47I	GGWCC	3 cut(s)	553, 956, 1008
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	6 cut(s)	167, 645, 809, 972, 1037, 1055
FalI	AAGNNNNNCTT	4 cut(s)	671, 703, 722, 754
FatI	CATG	6 cut(s)	163, 641, 805, 968, 1033, 1051
FauNDI	CATATG	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	709
FblI	GTMKAC	3 cut(s)	459, 855, 1048
Fnu4HI	GCNGC	9 cut(s)	300, 369, 933, 966, 973, 1038, 1056, 1059, 1149
FokI	GGATG	1 cut(s)	1010
Fsp4HI	GCNGC	9 cut(s)	300, 369, 933, 966, 973, 1038, 1056, 1059, 1149
FspBI	CTAG	1 cut(s)	146
FspI	TGCGCA	1 cut(s)	692
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	9 cut(s)	300, 369, 933, 966, 973, 1038, 1056, 1059, 1149
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	658, 1148
HapII	CCGG	2 cut(s)	237, 951
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	6 cut(s)	167, 645, 809, 972, 1037, 1055
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	4 cut(s)	248, 827, 1070, 1106
HpaII	CCGG	2 cut(s)	237, 951
HphI	GGTGA	2 cut(s)	575, 623
Hpy166II	GTNNAC	3 cut(s)	460, 856, 1049
Hpy188I	TCNGA	5 cut(s)	295, 494, 574, 714, 873
Hpy188III	TCNNGA	5 cut(s)	71, 237, 356, 407, 428
Hpy8I	GTNNAC	3 cut(s)	460, 856, 1049
HpyAV	CCTTC	5 cut(s)	51, 425, 560, 745, 878
HpyCH4III	ACNGT	4 cut(s)	424, 490, 782, 946
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	8 cut(s)	44, 302, 336, 443, 972, 1040, 1055, 1136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	754
HpyF3I	CTNAG	2 cut(s)	53, 343
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	6 cut(s)	167, 645, 809, 972, 1037, 1055
HspAI	GCGC	1 cut(s)	691
Kpn2I	TCCGGA	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	7 cut(s)	109, 651, 661, 709, 802, 938, 1021
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	7 cut(s)	286, 380, 919, 984, 1024, 1045, 1067
LweI	GCATC	2 cut(s)	430, 988
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	8 cut(s)	141, 252, 259, 315, 481, 776, 820, 1103
MalI	GATC	7 cut(s)	111, 653, 663, 711, 804, 940, 1023
MboI	GATC	7 cut(s)	109, 651, 661, 709, 802, 938, 1021
MboII	GAAGA	4 cut(s)	100, 461, 661, 1096
MluCI	AATT	3 cut(s)	32, 320, 672
MlyI	GAGTC	2 cut(s)	242, 1100
MmeI	TCCRAC	2 cut(s)	764, 896
MnlI	CCTC	6 cut(s)	41, 121, 233, 340, 616, 1060
MroI	TCCGGA	1 cut(s)	236
MseI	TTAA	3 cut(s)	173, 194, 362
MslI	CAYNNNNRTG	2 cut(s)	307, 506
MspA1I	CMGCKG	1 cut(s)	1058
MspI	CCGG	2 cut(s)	237, 951
MspR9I	CCNGG	1 cut(s)	951
Mva1269I	GAATGC	1 cut(s)	934
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	754
NciI	CCSGG	1 cut(s)	951
NcoI	CCATGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	7 cut(s)	109, 651, 661, 709, 802, 938, 1021
NlaIII	CATG	6 cut(s)	167, 645, 809, 972, 1037, 1055
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	4 cut(s)	252, 315, 481, 1103
NsbI	TGCGCA	1 cut(s)	692
NspI	RCATGY	3 cut(s)	645, 972, 1055
OliI	CACNNNNGTG	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	972
PceI	AGGCCT	1 cut(s)	658
PctI	GAATGC	1 cut(s)	934
PfeI	GAWTC	2 cut(s)	827, 1070
PkrI	GCNGC	9 cut(s)	301, 370, 934, 967, 974, 1039, 1057, 1060, 1150
PleI	GAGTC	2 cut(s)	242, 1100
PpsI	GAGTC	2 cut(s)	242, 1100
PshAI	GACNNNNGTC	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	3 cut(s)	553, 956, 1008
PstNI	CAGNNNCTG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	1058
RsaI	GTAC	3 cut(s)	65, 216, 743
RsaNI	GTAC	3 cut(s)	64, 215, 742
RseI	CAYNNNNRTG	2 cut(s)	307, 506
SaqAI	TTAA	3 cut(s)	173, 194, 362
SatI	GCNGC	9 cut(s)	300, 369, 933, 966, 973, 1038, 1056, 1059, 1149
Sau3AI	GATC	7 cut(s)	109, 651, 661, 709, 802, 938, 1021
Sau96I	GGNCC	3 cut(s)	553, 956, 1008
SchI	GAGTC	2 cut(s)	242, 1100
ScrFI	CCNGG	1 cut(s)	951
SetI	ASST	9 cut(s)	19, 62, 301, 307, 332, 571, 851, 988, 1060
SfaNI	GCATC	2 cut(s)	430, 988
SfcI	CTRYAG	1 cut(s)	895
SinI	GGWCC	3 cut(s)	553, 956, 1008
SmiMI	CAYNNNNRTG	2 cut(s)	307, 506
SphI	GCATGC	1 cut(s)	972
Sse9I	AATT	3 cut(s)	32, 320, 672
SseBI	AGGCCT	1 cut(s)	658
SsiI	CCGC	3 cut(s)	965, 1001, 1149
SspI	AATATT	1 cut(s)	917
SspMI	CTAG	1 cut(s)	146
StuI	AGGCCT	1 cut(s)	658
StyD4I	CCNGG	1 cut(s)	949
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	4 cut(s)	424, 490, 782, 946
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	941
TasI	AATT	3 cut(s)	32, 320, 672
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	2 cut(s)	968, 1151
TfiI	GAWTC	2 cut(s)	827, 1070
Tru1I	TTAA	3 cut(s)	173, 194, 362
Tru9I	TTAA	3 cut(s)	173, 194, 362
TscAI	CASTG	2 cut(s)	314, 493
TseFI	GTSAC	4 cut(s)	252, 315, 481, 1103
TseI	GCWGC	7 cut(s)	299, 368, 932, 972, 1037, 1055, 1058
Tsp45I	GTSAC	4 cut(s)	252, 315, 481, 1103
TspDTI	ATGAA	2 cut(s)	591, 854
TspRI	CASTG	2 cut(s)	314, 493
VpaK11BI	GGWCC	3 cut(s)	553, 956, 1008
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	3 cut(s)	645, 972, 1055
XmiI	GTMKAC	3 cut(s)	459, 855, 1048
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.