Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

39167372 .. 39168281

Gene Structure 910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCAGCCATGCTCATTCGCTTACCATTCTTTTCCGGTCCCGGAACTGCTAGAGAAATGAGGAATATCATGACAGATGTTATTCAATCAAGTAGCACAAATTGGCGATTACCAAGTAGTCAAAGAAGAGTCATTTCTTTTCGTAGCCCAGTGAAGTCTGTCCAAACCTCAACCCAAGTATCTATCCCAGGCACTTCGTCGACAAGAGAAGGAAAAGTGCCGTCAAGCTTCTTGAGGGACAAGAAGTTGGCTCCGATTCAGATCCGCCTAGCATGCAAGATTACTAAGCTAGTGGTATTGACTGGGGCTGGAATTAGCACAGAATGTGGTATTCCGGACTACGAAGTCCAAATGGAGCTTACAGTTTTGGTTTCAAACCAATTACCCATCGGTGATCTGAAGGAGTTTCTCCGCTCTAGTCGAGCTCGTAGGCGTTTTTGGGCAAGGAGTTATGCTGGGTGGAGAAGATTCAATGCTGCGCAGCCCAGTGCAGCTCATATTGCTTTATCATCACTAGAAAAAGCTGGTCGGATTAACTTGATGATTACGCAAAATGTTGATAGGTTGCATCACCGTGCTGGTAGCAATCCGGTTGAATTGCATGGAACTGCCCTTAATCCAATGTGGGCAGAGGCAATCGAAAGTTTGGACTATTGCAACCCTGGATCAGACAAGAGCTTTAGCATGAAGCAAAGGCTCGATGGGGACATTGAGATTGATGAAAAATTTTGGGAGGAGAATTTTCACATCCCTACATGCCAAAAGTGCAATGGAGTGCTGAAGCCTGATGTGATCAATGGTTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

269

Amino Acids

30.09

Weight (kDa)

9.74

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIR2	PF02146	102 - 265	7e-21	Sir2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
Acc16I	TGCGCA	1 cut(s)	480
AccBSI	CCGCTC	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	200
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	2 cut(s)	265, 412
AclWI	GGATC	2 cut(s)	256, 673
AcsI	RAATTY	2 cut(s)	725, 739
AcuI	CTGAAG	2 cut(s)	419, 800
AgsI	TTSAA	4 cut(s)	86, 375, 472, 596
AjnI	CCWGG	2 cut(s)	187, 661
AluBI	AGCT	7 cut(s)	228, 289, 358, 425, 494, 524, 678
AluI	AGCT	7 cut(s)	228, 289, 358, 425, 494, 524, 678
Alw21I	GWGCWC	1 cut(s)	427
AlwI	GGATC	2 cut(s)	256, 673
Aor13HI	TCCGGA	1 cut(s)	334
ApeKI	GCWGC	4 cut(s)	5, 476, 481, 491
ApoI	RAATTY	2 cut(s)	725, 739
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	404, 563
AvaII	GGWCC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BanII	GRGCYC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	4 cut(s)	17, 463, 493, 503
BccI	CCATC	2 cut(s)	395, 695
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	2 cut(s)	189, 663
BclI	TGATCA	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	42
BfaI	CTAG	5 cut(s)	51, 269, 290, 417, 515
BisI	GCNGC	4 cut(s)	6, 477, 482, 492
BlsI	GCNGC	4 cut(s)	7, 478, 483, 493
Bme1390I	CCNGG	3 cut(s)	42, 189, 663
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	40, 252
BmrFI	CCNGG	3 cut(s)	42, 189, 663
BmrI	ACTGGG	3 cut(s)	143, 312, 480
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	3 cut(s)	143, 312, 480
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	187, 661
BsaWI	WCCGGW	3 cut(s)	35, 334, 589
Bse1I	ACTGG	3 cut(s)	149, 307, 486
Bse3DI	GCAATG	1 cut(s)	775
Bse8I	GATNNNNATC	1 cut(s)	260
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	189, 663
BseDI	CCNNGG	2 cut(s)	187, 661
BseGI	GGATG	1 cut(s)	747
BseJI	GATNNNNATC	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	775
BseNI	ACTGG	3 cut(s)	149, 307, 486
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	4 cut(s)	17, 463, 493, 503
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	4 cut(s)	36, 42, 335, 590
BslFI	GGGAC	3 cut(s)	24, 251, 719
BsmFI	GGGAC	3 cut(s)	24, 251, 719
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	261, 394, 665, 792
BspACI	CCGC	2 cut(s)	265, 412
BspEI	TCCGGA	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	40, 252
BspPI	GGATC	2 cut(s)	256, 673
BsrBI	CCGCTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	775
BsrI	ACTGG	3 cut(s)	149, 307, 486
BssECI	CCNNGG	2 cut(s)	187, 661
BssMI	GATC	4 cut(s)	261, 394, 665, 792
Bst2UI	CCWGG	2 cut(s)	189, 663
Bst4CI	ACNGT	2 cut(s)	364, 575
Bst6I	CTCTTC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	4 cut(s)	264, 397, 668, 795
BstMBI	GATC	4 cut(s)	261, 394, 665, 792
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 500, 765
BstNI	CCWGG	2 cut(s)	189, 663
BstNSI	RCATGY	2 cut(s)	276, 759
BstSCI	CCNGG	3 cut(s)	40, 187, 661
BstV1I	GCAGC	4 cut(s)	17, 463, 493, 503
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	747
BtsIMutI	CAGTG	2 cut(s)	156, 493
Cac8I	GCNNGC	1 cut(s)	274
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	38
CviAII	CATG	6 cut(s)	10, 70, 273, 602, 685, 756
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	4 cut(s)	263, 396, 667, 794
DpnII	GATC	4 cut(s)	261, 394, 665, 792
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	2 cut(s)	419, 800
EcoICRI	GAGCTC	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	187, 661
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	6 cut(s)	13, 73, 276, 605, 688, 759
FaiI	YATR	8 cut(s)	11, 71, 274, 453, 498, 603, 686, 757
FaqI	GGGAC	3 cut(s)	24, 251, 719
FatI	CATG	6 cut(s)	9, 69, 272, 601, 684, 755
FbaI	TGATCA	1 cut(s)	792
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	4 cut(s)	6, 477, 482, 492
FokI	GGATG	1 cut(s)	734
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	4 cut(s)	6, 477, 482, 492
FspBI	CTAG	5 cut(s)	51, 269, 290, 417, 515
FspI	TGCGCA	1 cut(s)	480
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	4 cut(s)	6, 477, 482, 492
GsaI	CCCAGC	1 cut(s)	459
HapII	CCGG	4 cut(s)	36, 42, 335, 590
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	6 cut(s)	13, 73, 276, 605, 688, 759
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	3 cut(s)	129, 256, 468
HpaII	CCGG	4 cut(s)	36, 42, 335, 590
HphI	GGTGA	2 cut(s)	404, 563
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	5 cut(s)	255, 261, 399, 531, 670
Hpy188III	TCNNGA	3 cut(s)	70, 232, 335
Hpy8I	GTNNAC	1 cut(s)	201
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	203, 394
HpyCH4III	ACNGT	2 cut(s)	364, 575
HpyCH4V	TGCA	6 cut(s)	276, 491, 568, 601, 657, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 500, 765
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	13, 73, 276, 605, 688, 759
HspAI	GCGC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	4 cut(s)	261, 394, 665, 792
LmnI	GCTCC	2 cut(s)	256, 355
Lsp1109I	GCAGC	4 cut(s)	17, 463, 493, 503
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	5 cut(s)	51, 269, 290, 417, 515
MalI	GATC	4 cut(s)	263, 396, 667, 794
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	4 cut(s)	261, 394, 665, 792
MboII	GAAGA	2 cut(s)	138, 477
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	6 cut(s)	100, 312, 380, 596, 725, 739
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	5 cut(s)	54, 178, 228, 625, 727
MroI	TCCGGA	1 cut(s)	334
MseI	TTAA	2 cut(s)	534, 615
MslI	CAYNNNNRTG	1 cut(s)	573
MspI	CCGG	4 cut(s)	36, 42, 335, 590
MspR9I	CCNGG	3 cut(s)	42, 189, 663
MvaI	CCWGG	2 cut(s)	189, 663
MwoI	GCNNNNNNNGC	3 cut(s)	273, 500, 765
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	4 cut(s)	261, 394, 665, 792
NlaIII	CATG	6 cut(s)	13, 73, 276, 605, 688, 759
NlaIV	GGNNCC	2 cut(s)	40, 252
NsbI	TGCGCA	1 cut(s)	480
NspI	RCATGY	2 cut(s)	276, 759
PaeI	GCATGC	1 cut(s)	276
PagI	TCATGA	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	256, 468
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	7, 478, 483, 493
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	187, 661
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	2 cut(s)	187, 661
PspN4I	GGNNCC	2 cut(s)	40, 252
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	534, 615
SatI	GCNGC	4 cut(s)	6, 477, 482, 492
Sau3AI	GATC	4 cut(s)	261, 394, 665, 792
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	3 cut(s)	42, 189, 663
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	9 cut(s)	170, 230, 291, 360, 427, 496, 526, 566, 680
SfaNI	GCATC	1 cut(s)	577
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SphI	GCATGC	1 cut(s)	276
Sse9I	AATT	6 cut(s)	100, 312, 380, 596, 725, 739
SsiI	CCGC	2 cut(s)	265, 412
SspMI	CTAG	5 cut(s)	51, 269, 290, 417, 515
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	3 cut(s)	40, 187, 661
TaaI	ACNGT	2 cut(s)	364, 575
TaqI	TCGA	4 cut(s)	200, 421, 639, 699
TasI	AATT	6 cut(s)	100, 312, 380, 596, 725, 739
TfiI	GAWTC	2 cut(s)	256, 468
Tru1I	TTAA	2 cut(s)	534, 615
Tru9I	TTAA	2 cut(s)	534, 615
TscAI	CASTG	2 cut(s)	156, 493
TseI	GCWGC	4 cut(s)	5, 476, 481, 491
TspDTI	ATGAA	2 cut(s)	701, 735
TspRI	CASTG	2 cut(s)	156, 493
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	2 cut(s)	725, 739
XceI	RCATGY	2 cut(s)	276, 759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	5 cut(s)	51, 269, 290, 417, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.