Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

111977 .. 119819

Gene Structure 7843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g00050.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGATGGCTATGCTTATGCGCTCGCCTCCCCATCTTCCCATTCCATTCTCTTCAAGTTCCAGAAATGCTGCGCAACTGCTGGGGAATATCATGACAGATATTATTCAGTCAAGTAGCACAAATTTGCGATTGCCAAGCAGTAGAGCAATAGTCATTTCTTTTGACTGCTCCGTCAAGTCTGTCCAAACTTCATGCCGAATGTCTGTCCCTGGAACCTCCTCAAGGAGAGAAGATAAAGTGCCTTCGAGCTTCACGAGGGATAAGAAGTTGGTTCCTGATTCTGATCCTCCTAGCATGCAAGATGTCAACCTTCTCTATCAGTTTTTCGACCAAAGTACAAAGCTCATGGTGTTGACAGGAGCTGGAATCAGCACAGAATGTGGAATTCCCGACTACAGAAGCCCCAATGGAGCTTATAGTTCTGGATTCAAACCAATTACCCATCAGGAGTTTCTTCGTTCTAGTCAGACCCGAAGGCGATATTGGGCAAGGAGTTATGCTGGATGGAGACGATTTACTGCTGCAGAGCCTGGTTCAGCTCATATTTCTTTAGCATCTCTAGAAAAAGCTGGCCGGATAAATTTCATGATTACACAAAATGTTGATAGGTTGCATCACCGTGCTGGTAGTAACCCGGTCGAATTACATGGAACAGTATATTCTGTCATTTGTATGGACTGTGGTTTTTCCTTCCCCCGGAATCTATTTCAAGACCAAGTTAAGGCCCTTAATCCAAAGTGGGCAGAAGCAATTGAAAGTTTGGATTATGGTAACCCCGGATCACAAAAGAGCTTTGGCATGAAGCAAAGACCTGATGGTGACATTGAAATTGATGAAAAATTTTGGGAAGAGGAATTTCACATTCCTACGTGTCCAAAGTGCAATGGAGTGCTTAAACCTGATCTTCTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

305

Amino Acids

34.07

Weight (kDa)

8.81

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc16I	TGCGCA	1 cut(s)	72
AclWI	GGATC	2 cut(s)	278, 787
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	5 cut(s)	121, 384, 580, 839, 854
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	222, 696, 721
AflIII	ACRYGT	1 cut(s)	869
AgsI	TTSAA	5 cut(s)	54, 430, 710, 755, 827
AjnI	CCWGG	2 cut(s)	208, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	466, 498
AluBI	AGCT	7 cut(s)	249, 343, 362, 413, 539, 569, 792
AluI	AGCT	7 cut(s)	249, 343, 362, 413, 539, 569, 792
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	2 cut(s)	278, 787
AlwNI	CAGNNNCTG	2 cut(s)	362, 530
AoxI	GGCC	2 cut(s)	571, 723
ApeKI	GCWGC	2 cut(s)	68, 521
ApoI	RAATTY	5 cut(s)	121, 384, 580, 839, 854
AspLEI	GCGC	2 cut(s)	21, 73
AspS9I	GGNCC	1 cut(s)	724
AsuC2I	CCSGG	3 cut(s)	635, 697, 777
AsuHPI	GGTGA	2 cut(s)	608, 830
BauI	CACGAG	1 cut(s)	253
BbvI	GCAGC	2 cut(s)	55, 508
BccI	CCATC	4 cut(s)	39, 450, 498, 809
BciT130I	CCWGG	2 cut(s)	210, 531
BcnI	CCSGG	3 cut(s)	635, 697, 777
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	3 cut(s)	291, 462, 560
BfmI	CTRYAG	2 cut(s)	394, 522
BisI	GCNGC	2 cut(s)	69, 522
BlsI	GCNGC	2 cut(s)	70, 523
Bme1390I	CCNGG	5 cut(s)	210, 531, 635, 697, 777
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	2 cut(s)	214, 273
BmrFI	CCNGG	5 cut(s)	210, 531, 635, 697, 777
BmsI	GCATC	2 cut(s)	563, 622
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	3 cut(s)	635, 697, 777
BsaAI	YACGTR	1 cut(s)	870
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	208, 695, 775
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 696, 721
Bse3DI	GCAATG	1 cut(s)	889
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	210, 531
BseDI	CCNNGG	3 cut(s)	208, 695, 775
BseGI	GGATG	1 cut(s)	509
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	3 cut(s)	222, 696, 721
BseMI	GCAATG	1 cut(s)	889
BseRI	GAGGAG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	55, 508
BseYI	CCCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	639
BshFI	GGCC	2 cut(s)	573, 725
BsiEI	CGRYCG	1 cut(s)	639
BsiSI	CCGG	4 cut(s)	574, 635, 697, 777
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	222, 696, 721
BsmAI	GTCTC	1 cut(s)	502
BsmBI	CGTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	573, 725
Bsp143I	GATC	3 cut(s)	283, 779, 901
BspANI	GGCC	2 cut(s)	573, 725
BspHI	TCATGA	2 cut(s)	90, 585
BspLI	GGNNCC	2 cut(s)	214, 273
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	2 cut(s)	278, 787
BsrDI	GCAATG	1 cut(s)	889
BssECI	CCNNGG	3 cut(s)	208, 695, 775
BssMI	GATC	3 cut(s)	283, 779, 901
BssSI	CACGAG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	210, 531
Bst4CI	ACNGT	3 cut(s)	620, 655, 680
Bst6I	CTCTTC	2 cut(s)	55, 843
BstBAI	YACGTR	1 cut(s)	870
BstC8I	GCNNGC	3 cut(s)	23, 296, 571
BstEII	GGTNACC	1 cut(s)	770
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	21, 73
BstKTI	GATC	3 cut(s)	286, 782, 904
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	3 cut(s)	283, 779, 901
BstMCI	CGRYCG	1 cut(s)	639
BstNI	CCWGG	2 cut(s)	210, 531
BstNSI	RCATGY	1 cut(s)	298
BstPI	GGTNACC	1 cut(s)	770
BstSCI	CCNGG	5 cut(s)	208, 529, 633, 695, 775
BstSFI	CTRYAG	2 cut(s)	394, 522
BstV1I	GCAGC	2 cut(s)	55, 508
BsuRI	GGCC	2 cut(s)	573, 725
BtsCI	GGATG	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	23, 296, 571
CaiI	CAGNNNCTG	2 cut(s)	362, 530
CciI	TCATGA	2 cut(s)	90, 585
CfoI	GCGC	2 cut(s)	21, 73
Cfr13I	GGNCC	1 cut(s)	724
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	7 cut(s)	91, 192, 295, 346, 586, 647, 799
CviQI	GTAC	1 cut(s)	336
DpnI	GATC	3 cut(s)	285, 781, 903
DpnII	GATC	3 cut(s)	283, 779, 901
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	55, 843
EarI	CTCTTC	2 cut(s)	55, 843
Eco91I	GGTNACC	1 cut(s)	770
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	724
EcoO65I	GGTNACC	1 cut(s)	770
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	208, 529
Esp3I	CGTCTC	1 cut(s)	502
FaeI	CATG	7 cut(s)	94, 195, 298, 349, 589, 650, 802
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	7 cut(s)	90, 191, 294, 345, 585, 646, 798
Fnu4HI	GCNGC	2 cut(s)	69, 522
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	2 cut(s)	69, 522
FspBI	CTAG	3 cut(s)	291, 462, 560
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	2 cut(s)	20, 72
GluI	GCNGC	2 cut(s)	69, 522
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	573, 725
HapII	CCGG	4 cut(s)	574, 635, 697, 777
HhaI	GCGC	2 cut(s)	21, 73
Hin1II	CATG	7 cut(s)	94, 195, 298, 349, 589, 650, 802
Hin6I	GCGC	2 cut(s)	19, 71
HinP1I	GCGC	2 cut(s)	19, 71
HincII	GTYRAC	2 cut(s)	307, 354
HindII	GTYRAC	2 cut(s)	307, 354
HinfI	GANTC	4 cut(s)	278, 366, 426, 700
HpaII	CCGG	4 cut(s)	574, 635, 697, 777
HphI	GGTGA	2 cut(s)	608, 830
Hpy166II	GTNNAC	2 cut(s)	307, 354
Hpy188I	TCNGA	2 cut(s)	283, 468
Hpy8I	GTNNAC	2 cut(s)	307, 354
HpyAV	CCTTC	4 cut(s)	252, 320, 468, 700
HpyCH4III	ACNGT	3 cut(s)	620, 655, 680
HpyCH4IV	ACGT	1 cut(s)	869
HpyCH4V	TGCA	4 cut(s)	298, 524, 613, 882
HpySE526I	ACGT	1 cut(s)	869
Hsp92II	CATG	7 cut(s)	94, 195, 298, 349, 589, 650, 802
HspAI	GCGC	2 cut(s)	19, 71
Kzo9I	GATC	3 cut(s)	283, 779, 901
LmnI	GCTCC	3 cut(s)	173, 359, 410
Lsp1109I	GCAGC	2 cut(s)	55, 508
LweI	GCATC	2 cut(s)	563, 622
MaeI	CTAG	3 cut(s)	291, 462, 560
MaeII	ACGT	1 cut(s)	869
MaeIII	GTNAC	3 cut(s)	629, 770, 818
MalI	GATC	3 cut(s)	285, 781, 903
MboI	GATC	3 cut(s)	283, 779, 901
MboII	GAAGA	6 cut(s)	26, 42, 242, 446, 860, 896
MfeI	CAATTG	1 cut(s)	750
MluCI	AATT	9 cut(s)	121, 384, 435, 580, 641, 750, 828, 839, 854
MnlI	CCTC	6 cut(s)	36, 226, 229, 249, 297, 844
MseI	TTAA	3 cut(s)	720, 729, 894
MslI	CAYNNNNRTG	2 cut(s)	618, 671
MspI	CCGG	4 cut(s)	574, 635, 697, 777
MspR9I	CCNGG	5 cut(s)	210, 531, 635, 697, 777
MunI	CAATTG	1 cut(s)	750
MvaI	CCWGG	2 cut(s)	210, 531
NciI	CCSGG	3 cut(s)	635, 697, 777
NdeII	GATC	3 cut(s)	283, 779, 901
NlaIII	CATG	7 cut(s)	94, 195, 298, 349, 589, 650, 802
NlaIV	GGNNCC	2 cut(s)	214, 273
NmuCI	GTSAC	1 cut(s)	818
NsbI	TGCGCA	1 cut(s)	72
NspI	RCATGY	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	298
PagI	TCATGA	2 cut(s)	90, 585
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PfeI	GAWTC	4 cut(s)	278, 366, 426, 700
PkrI	GCNGC	2 cut(s)	70, 523
Ppu21I	YACGTR	1 cut(s)	870
Psp6I	CCWGG	2 cut(s)	208, 529
PspEI	GGTNACC	1 cut(s)	770
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	208, 529
PspN4I	GGNNCC	2 cut(s)	214, 273
PspPI	GGNCC	1 cut(s)	724
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	2 cut(s)	362, 530
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	2 cut(s)	618, 671
SaqAI	TTAA	3 cut(s)	720, 729, 894
SatI	GCNGC	2 cut(s)	69, 522
Sau3AI	GATC	3 cut(s)	283, 779, 901
Sau96I	GGNCC	1 cut(s)	724
ScrFI	CCNGG	5 cut(s)	210, 531, 635, 697, 777
SfaNI	GCATC	2 cut(s)	563, 622
SfcI	CTRYAG	2 cut(s)	394, 522
SmiMI	CAYNNNNRTG	2 cut(s)	618, 671
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	9 cut(s)	121, 384, 435, 580, 641, 750, 828, 839, 854
SspMI	CTAG	3 cut(s)	291, 462, 560
StyD4I	CCNGG	5 cut(s)	208, 529, 633, 695, 775
TaaI	ACNGT	3 cut(s)	620, 655, 680
TaiI	ACGT	1 cut(s)	872
TaqI	TCGA	3 cut(s)	245, 327, 639
TasI	AATT	9 cut(s)	121, 384, 435, 580, 641, 750, 828, 839, 854
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	4 cut(s)	278, 366, 426, 700
Tru1I	TTAA	3 cut(s)	720, 729, 894
Tru9I	TTAA	3 cut(s)	720, 729, 894
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	2 cut(s)	68, 521
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	4 cut(s)	180, 574, 815, 849
TspGWI	ACGGA	1 cut(s)	160
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	5 cut(s)	121, 384, 580, 839, 854
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	3 cut(s)	291, 462, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.