Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

35753843 .. 35759843

Gene Structure 6001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAGGAATATCATGACAGATGTTATTCAATCAAGTAGCACAAATTGGCGATTACCAAGCAGTCAAAGAAGAGTCATTTCTTTTCGTAGCTCAGTGAAGTCTGTCCAAACCTCAACCCAAGTATCTGTCCCAGGCACTTCGTCGACAAGAGAAGGAAAAGTGCCTTCGAGCTTCTTGAGGGACAAGAAGTTGGCTCCTGATTCAGATCCGCCTAGCATGCAAGATGTCAACCTTTTGTATCAGTTTTTCGATCAAAGTACTAAGCTAGTGGTATTGACTGGAGCTGGAATTAGCACAGAATGTGGTATTCCCGACTACAGAAGTCCAAATGGAGCTTACAGTTCTGGTTTCAAACCAATTACCCATCAGGAGTTTCTCCGCTCTAGTCGGGCTCGTAGGCGTTATTGGGCAAGGAGTTATGCTGGGTGGAGAAGATTTAATGCTGCGCAGCCCAGTGCAGCTCATATTGCTTTATCATCACTAGAAAAAGCTGGTCGGGTTAACTTGATGATTACGCAAAATGTTGATAGGTTGCATCACCGTGCTGGTAGCAATCCAGTTGAATTGCATGGAACTGTTTATTCCGTGATTTGTATAGATTGTGGTTTTTCCTTTTGCCGGCATATATTTCAGGATCAACTTAAGGCCCTTAATCCAAAGTGGGCAGAGGCAATCGAAAGTTTGGACTATGGCAACCCTGGATCAGACAAGAGCTTTGGCATGAAGCAAAGGCCTGATGGTGACATTGAGATTGATGAAAAATTTTGGGAGGAGAATTTTCACATCCCTACATGCCAAAAGTGCAATGGAGTGCTGAAGCCTGATGTTGTCTTCTTTGGTGACAATGTCCCCAAGGACAGAGCTGATAAGGCAATCCAAGCTGCAAAAGAATGTGATGCTTTTCTTGTACTAGGATCATCTGTAATGACCATGTCTGCTTTTCGACTTGTCAGGTACAGATTGTTTTCATTCCAATTTACTTCAGTTTTAGGCAATAAGCATAAAAGGGGAAGAAGTCTTTTATCTGTTGTTGAGGCCCAGAATTTGTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

351

Amino Acids

39.34

Weight (kDa)

9.46

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIR2	PF02146	94 - 309	1e-41	Sir2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	447
AccBSI	CCGCTC	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	143
AciI	CCGC	2 cut(s)	209, 379
AclWI	GGATC	4 cut(s)	200, 642, 709, 922
AcsI	RAATTY	3 cut(s)	761, 775, 1042
AcuI	CTGAAG	2 cut(s)	836, 966
AfaI	GTAC	3 cut(s)	259, 909, 956
AfiI	CCNNNNNNNGG	1 cut(s)	618
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	29, 352, 563
AjnI	CCWGG	2 cut(s)	130, 697
AlwI	GGATC	4 cut(s)	200, 642, 709, 922
AoxI	GGCC	3 cut(s)	645, 731, 1035
ApeKI	GCWGC	4 cut(s)	443, 448, 458, 881
ApoI	RAATTY	3 cut(s)	761, 775, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	646, 1036
AsuHPI	GGTGA	3 cut(s)	530, 752, 851
BaeI	ACNNNNGTAYC	2 cut(s)	105, 138
BanII	GRGCYC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	823
BbvI	GCAGC	4 cut(s)	430, 460, 470, 868
BccI	CCATC	2 cut(s)	372, 731
BciT130I	CCWGG	2 cut(s)	132, 699
BfaI	CTAG	5 cut(s)	213, 266, 384, 482, 911
BfmI	CTRYAG	1 cut(s)	316
BfrI	CTTAAG	1 cut(s)	641
BisI	GCNGC	4 cut(s)	444, 449, 459, 882
BlsI	GCNGC	4 cut(s)	445, 450, 460, 883
BmcAI	AGTACT	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	132, 699
BmgT120I	GGNCC	2 cut(s)	646, 1036
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	132, 699
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	544, 886
BmuI	ACTGGG	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	823
BpmI	CTGGAG	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	130, 697, 852
Bsc4I	CCNNNNNNNGG	1 cut(s)	618
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	3 cut(s)	283, 453, 557
Bse3DI	GCAATG	1 cut(s)	811
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	132, 699
BseDI	CCNNGG	3 cut(s)	130, 697, 852
BseGI	GGATG	1 cut(s)	783
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	618
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	3 cut(s)	283, 453, 557
BseRI	GAGGAG	1 cut(s)	785
BseXI	GCAGC	4 cut(s)	430, 460, 470, 868
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	647, 733, 1037
BsiSI	CCGG	1 cut(s)	619
BslFI	GGGAC	3 cut(s)	113, 194, 833
BslI	CCNNNNNNNGG	1 cut(s)	618
BsmFI	GGGAC	3 cut(s)	113, 194, 833
BsnI	GGCC	3 cut(s)	647, 733, 1037
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	5 cut(s)	205, 250, 634, 701, 914
BspACI	CCGC	2 cut(s)	209, 379
BspANI	GGCC	3 cut(s)	647, 733, 1037
BspCNI	CTCAG	1 cut(s)	104
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	4 cut(s)	200, 642, 709, 922
BspTI	CTTAAG	1 cut(s)	641
BsrBI	CCGCTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	811
BsrFI	RCCGGY	1 cut(s)	618
BsrI	ACTGG	3 cut(s)	283, 453, 557
BssAI	RCCGGY	1 cut(s)	618
BssECI	CCNNGG	3 cut(s)	130, 697, 852
BssMI	GATC	5 cut(s)	205, 250, 634, 701, 914
BssT1I	CCWWGG	1 cut(s)	852
Bst2UI	CCWGG	2 cut(s)	132, 699
Bst4CI	ACNGT	3 cut(s)	341, 542, 577
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	218, 620
BstDEI	CTNAG	2 cut(s)	91, 261
BstF5I	GGATG	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	5 cut(s)	208, 253, 637, 704, 917
BstMBI	GATC	5 cut(s)	205, 250, 634, 701, 914
BstMWI	GCNNNNNNNGC	5 cut(s)	217, 467, 801, 869, 878
BstNI	CCWGG	2 cut(s)	132, 699
BstNSI	RCATGY	2 cut(s)	220, 795
BstSCI	CCNGG	2 cut(s)	130, 697
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	4 cut(s)	430, 460, 470, 868
BstV2I	GAAGAC	1 cut(s)	823
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	647, 733, 1037
BtsCI	GGATG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	99, 460
Cac8I	GCNNGC	2 cut(s)	218, 620
CciI	TCATGA	1 cut(s)	12
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	618
Cfr13I	GGNCC	2 cut(s)	646, 1036
Csp6I	GTAC	3 cut(s)	258, 908, 955
CviAII	CATG	6 cut(s)	13, 217, 569, 721, 792, 931
CviQI	GTAC	3 cut(s)	258, 908, 955
DdeI	CTNAG	2 cut(s)	91, 261
DpnI	GATC	5 cut(s)	207, 252, 636, 703, 916
DpnII	GATC	5 cut(s)	205, 250, 634, 701, 914
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	852
Eco147I	AGGCCT	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	394
Eco57I	CTGAAG	2 cut(s)	836, 966
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	130, 697
EcoT14I	CCWWGG	1 cut(s)	852
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	6 cut(s)	16, 220, 572, 724, 795, 934
FaqI	GGGAC	3 cut(s)	113, 194, 833
FatI	CATG	6 cut(s)	12, 216, 568, 720, 791, 930
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	444, 449, 459, 882
FokI	GGATG	1 cut(s)	770
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	4 cut(s)	444, 449, 459, 882
FspBI	CTAG	5 cut(s)	213, 266, 384, 482, 911
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	4 cut(s)	444, 449, 459, 882
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	647, 733, 1037
HapII	CCGG	1 cut(s)	619
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	6 cut(s)	16, 220, 572, 724, 795, 934
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	3 cut(s)	144, 229, 502
HindII	GTYRAC	3 cut(s)	144, 229, 502
HinfI	GANTC	2 cut(s)	72, 200
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	3 cut(s)	530, 752, 851
Hpy166II	GTNNAC	3 cut(s)	144, 229, 502
Hpy188I	TCNGA	2 cut(s)	205, 706
Hpy188III	TCNNGA	6 cut(s)	13, 175, 197, 311, 368, 632
Hpy8I	GTNNAC	3 cut(s)	144, 229, 502
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	146, 174
HpyCH4III	ACNGT	3 cut(s)	341, 542, 577
HpyCH4V	TGCA	6 cut(s)	220, 458, 535, 568, 804, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	217, 467, 801, 869, 878
HpyF3I	CTNAG	2 cut(s)	91, 261
Hsp92II	CATG	6 cut(s)	16, 220, 572, 724, 795, 934
HspAI	GCGC	1 cut(s)	446
KroI	GCCGGC	1 cut(s)	618
KroNI	GCCGGC	1 cut(s)	620
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	205, 250, 634, 701, 914
LmnI	GCTCC	3 cut(s)	199, 281, 332
Lsp1109I	GCAGC	4 cut(s)	430, 460, 470, 868
LweI	GCATC	2 cut(s)	544, 886
MaeI	CTAG	5 cut(s)	213, 266, 384, 482, 911
MaeIII	GTNAC	2 cut(s)	740, 839
MalI	GATC	5 cut(s)	207, 252, 636, 703, 916
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	5 cut(s)	205, 250, 634, 701, 914
MboII	GAAGA	4 cut(s)	81, 444, 823, 1023
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	8 cut(s)	43, 288, 357, 563, 761, 775, 974, 1042
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	121, 171, 661, 763, 1027
MroNI	GCCGGC	1 cut(s)	618
MseI	TTAA	5 cut(s)	438, 501, 642, 651, 1054
MslI	CAYNNNNRTG	1 cut(s)	540
MspCI	CTTAAG	1 cut(s)	641
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	2 cut(s)	132, 699
MvaI	CCWGG	2 cut(s)	132, 699
MwoI	GCNNNNNNNGC	5 cut(s)	217, 467, 801, 869, 878
NaeI	GCCGGC	1 cut(s)	620
NdeII	GATC	5 cut(s)	205, 250, 634, 701, 914
NgoMIV	GCCGGC	1 cut(s)	618
NlaIII	CATG	6 cut(s)	16, 220, 572, 724, 795, 934
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	740, 839
NsbI	TGCGCA	1 cut(s)	447
NspI	RCATGY	2 cut(s)	220, 795
PaeI	GCATGC	1 cut(s)	220
PagI	TCATGA	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	733
PdiI	GCCGGC	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	2 cut(s)	845, 931
PkrI	GCNGC	4 cut(s)	445, 450, 460, 883
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	130, 697
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	130, 697
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	646, 1036
PsuI	RGATCY	1 cut(s)	205
PsyI	GACNNNGTC	2 cut(s)	845, 931
RsaI	GTAC	3 cut(s)	259, 909, 956
RsaNI	GTAC	3 cut(s)	258, 908, 955
RseI	CAYNNNNRTG	1 cut(s)	540
SalI	GTCGAC	1 cut(s)	142
SaqAI	TTAA	5 cut(s)	438, 501, 642, 651, 1054
SatI	GCNGC	4 cut(s)	444, 449, 459, 882
Sau3AI	GATC	5 cut(s)	205, 250, 634, 701, 914
Sau96I	GGNCC	2 cut(s)	646, 1036
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	132, 699
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	2 cut(s)	544, 886
SfcI	CTRYAG	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	2 cut(s)	175, 641
SmoI	CTYRAG	2 cut(s)	175, 641
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	8 cut(s)	43, 288, 357, 563, 761, 775, 974, 1042
SseBI	AGGCCT	1 cut(s)	733
SsiI	CCGC	2 cut(s)	209, 379
SspMI	CTAG	5 cut(s)	213, 266, 384, 482, 911
StuI	AGGCCT	1 cut(s)	733
StyD4I	CCNGG	2 cut(s)	130, 697
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	3 cut(s)	341, 542, 577
TaqI	TCGA	5 cut(s)	143, 167, 249, 675, 943
TasI	AATT	8 cut(s)	43, 288, 357, 563, 761, 775, 974, 1042
TatI	WGTACW	2 cut(s)	257, 907
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	5 cut(s)	438, 501, 642, 651, 1054
Tru9I	TTAA	5 cut(s)	438, 501, 642, 651, 1054
TscAI	CASTG	2 cut(s)	99, 460
TseFI	GTSAC	2 cut(s)	740, 839
TseI	GCWGC	4 cut(s)	443, 448, 458, 881
Tsp45I	GTSAC	2 cut(s)	740, 839
TspDTI	ATGAA	3 cut(s)	737, 771, 957
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	99, 460
Tth111I	GACNNNGTC	2 cut(s)	845, 931
Vha464I	CTTAAG	1 cut(s)	641
XapI	RAATTY	3 cut(s)	761, 775, 1042
XceI	RCATGY	2 cut(s)	220, 795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	803
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	5 cut(s)	213, 266, 384, 482, 911
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.