Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

40283159 .. 40289124

Gene Structure 5966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCAGCCATGCTCATTCGCTTACCATTCTTTTCCGGTCCCAGAACTGCTAGAGAAATGAGGAATATCATGACAGATGTTATTCAATCAAGTAGCACAAATTGGCGATTACCAAGCAGTCAAAGAAGAGTCATTTCTTTTCGTAGCTCAGTGAAGTCTGTCCAAACCTCAACCCAAGTATCTGTCCCAGGCACTTCATCGACAAGAGAAGGAAAAGTGCCTTCGAGCTTCTTGAGGGACAAGAAGTTGGCTCCTGATTCAGATCCGCCTAGCATGCAAGATGTCAACCTTCTGTATCAGTTTTTCGATCAAAGTACTAAGCTAGTGGTATTGACTGGAGCTGGAATTAGCACAGAATGTGGTATTCCCGACTACAGAAGTCCAAATGGAGCTTACAGTTCTGGTTTCAAACCAATTACCCATCAGGAGTTTCTCCGCTCTAGTCGGGCTCGTAGGCGTTATTGGGCAAGGAGTTATGCTGGGTGGAGAAGATTTAATGCTGCGCAGCCCAGTGCAGCTCATATTGCTTTATCATCACTAGAAAAAGCTGGTCGGGTTAACTTGATGATTACGCAAAATGTTGATAGGTTGCATCACCGTGCTGGTAGCAATCCAGTTGAATTGCATGGAACTGTTTATTCCGTGATTTGTATAGATTGTGGTTTTTCCTTTTGCCGGCATATATTTCAGGATCAACTTAAGGCCCTTAATCCAAAGTGGGCAGAGGCAATCGAAAGTTTGGACTATGGCAACCCTGGATCAGACAAGAGCTTTGGCATGAAGCAAAGGCCTGATGGTGACATTGAGATTGATGAAAAATTTTGGGAGGAGAATTTTCACATCCCTACATGCCAAAAGTGCAATGGAGTGCTGAAGCCTGATGTTGTCTTCTTTGGTGACAATGTCCCCAAGGACAGAGCTGATAAGGCAATCCAAGCTGCAAAAGAATGTGATGCTTTTCTTGTACTAGGATCATCTGTAATGACCATGTCTGCTTTTCGACTTGTCAGGTACAGATTGTTTTCATTCCAATTTACTTCAGTTTTAGGCAATAAGCATAAAGGGAAAGAAGTCTTTTATCTGTTGTTGAGGCCCAGAATTTTTCTTGTTAAACTTGTAATCAGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

376

Amino Acids

42.37

Weight (kDa)

9.7

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIR2	PF02146	113 - 328	1.2e-41	Sir2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	504
AccBSI	CCGCTC	1 cut(s)	438
AciI	CCGC	2 cut(s)	266, 436
AclWI	GGATC	4 cut(s)	257, 699, 766, 979
AcsI	RAATTY	3 cut(s)	818, 832, 1098
AcuI	CTGAAG	2 cut(s)	893, 1023
AfaI	GTAC	3 cut(s)	316, 966, 1013
AfiI	CCNNNNNNNGG	1 cut(s)	675
AflII	CTTAAG	1 cut(s)	698
AgsI	TTSAA	3 cut(s)	86, 409, 620
AjnI	CCWGG	2 cut(s)	187, 754
AlwI	GGATC	4 cut(s)	257, 699, 766, 979
AoxI	GGCC	3 cut(s)	702, 788, 1091
ApeKI	GCWGC	5 cut(s)	5, 500, 505, 515, 938
ApoI	RAATTY	3 cut(s)	818, 832, 1098
ArsI	GACNNNNNNTTYG	2 cut(s)	755, 787
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	3 cut(s)	38, 703, 1092
AsuHPI	GGTGA	3 cut(s)	587, 809, 908
AvaII	GGWCC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BanII	GRGCYC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	880
BbvI	GCAGC	5 cut(s)	17, 487, 517, 527, 925
BccI	CCATC	2 cut(s)	429, 788
BciT130I	CCWGG	2 cut(s)	189, 756
BfaI	CTAG	6 cut(s)	51, 270, 323, 441, 539, 968
BfmI	CTRYAG	1 cut(s)	373
BfrI	CTTAAG	1 cut(s)	698
BisI	GCNGC	5 cut(s)	6, 501, 506, 516, 939
BlsI	GCNGC	5 cut(s)	7, 502, 507, 517, 940
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	189, 756
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	38, 703, 1092
BmiI	GGNNCC	2 cut(s)	40, 252
BmrFI	CCNGG	2 cut(s)	189, 756
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	601, 943
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	880
BpmI	CTGGAG	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	187, 754, 909
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	675
Bse118I	RCCGGY	1 cut(s)	675
Bse1I	ACTGG	3 cut(s)	340, 510, 614
Bse3DI	GCAATG	1 cut(s)	868
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	189, 756
BseDI	CCNNGG	3 cut(s)	187, 754, 909
BseGI	GGATG	1 cut(s)	840
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	675
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	3 cut(s)	340, 510, 614
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	5 cut(s)	17, 487, 517, 527, 925
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	704, 790, 1093
BsiSI	CCGG	2 cut(s)	36, 676
BslFI	GGGAC	4 cut(s)	24, 170, 251, 890
BslI	CCNNNNNNNGG	1 cut(s)	675
BsmFI	GGGAC	4 cut(s)	24, 170, 251, 890
BsnI	GGCC	3 cut(s)	704, 790, 1093
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	5 cut(s)	262, 307, 691, 758, 971
BspACI	CCGC	2 cut(s)	266, 436
BspANI	GGCC	3 cut(s)	704, 790, 1093
BspCNI	CTCAG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	40, 252
BspPI	GGATC	4 cut(s)	257, 699, 766, 979
BspTI	CTTAAG	1 cut(s)	698
BsrBI	CCGCTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	868
BsrFI	RCCGGY	1 cut(s)	675
BsrI	ACTGG	3 cut(s)	340, 510, 614
BssAI	RCCGGY	1 cut(s)	675
BssECI	CCNNGG	3 cut(s)	187, 754, 909
BssMI	GATC	5 cut(s)	262, 307, 691, 758, 971
BssT1I	CCWWGG	1 cut(s)	909
Bst2UI	CCWGG	2 cut(s)	189, 756
Bst4CI	ACNGT	3 cut(s)	398, 599, 634
Bst6I	CTCTTC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	275, 677
BstDEI	CTNAG	2 cut(s)	148, 318
BstF5I	GGATG	1 cut(s)	840
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	5 cut(s)	265, 310, 694, 761, 974
BstMBI	GATC	5 cut(s)	262, 307, 691, 758, 971
BstMWI	GCNNNNNNNGC	5 cut(s)	274, 524, 858, 926, 935
BstNI	CCWGG	2 cut(s)	189, 756
BstNSI	RCATGY	2 cut(s)	277, 852
BstSCI	CCNGG	2 cut(s)	187, 754
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	5 cut(s)	17, 487, 517, 527, 925
BstV2I	GAAGAC	1 cut(s)	880
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	704, 790, 1093
BtsCI	GGATG	1 cut(s)	840
BtsIMutI	CAGTG	2 cut(s)	156, 517
Cac8I	GCNNGC	2 cut(s)	275, 677
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	675
Cfr13I	GGNCC	3 cut(s)	38, 703, 1092
Csp6I	GTAC	3 cut(s)	315, 965, 1012
CviAII	CATG	7 cut(s)	10, 70, 274, 626, 778, 849, 988
CviQI	GTAC	3 cut(s)	315, 965, 1012
DdeI	CTNAG	2 cut(s)	148, 318
DpnI	GATC	5 cut(s)	264, 309, 693, 760, 973
DpnII	GATC	5 cut(s)	262, 307, 691, 758, 971
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	909
Eco147I	AGGCCT	1 cut(s)	790
Eco24I	GRGCYC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	2 cut(s)	893, 1023
EcoO109I	RGGNCCY	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	187, 754
EcoT14I	CCWWGG	1 cut(s)	909
EcoT38I	GRGCYC	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	909
FaeI	CATG	7 cut(s)	13, 73, 277, 629, 781, 852, 991
FaqI	GGGAC	4 cut(s)	24, 170, 251, 890
FatI	CATG	7 cut(s)	9, 69, 273, 625, 777, 848, 987
Fnu4HI	GCNGC	5 cut(s)	6, 501, 506, 516, 939
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	5 cut(s)	6, 501, 506, 516, 939
FspBI	CTAG	6 cut(s)	51, 270, 323, 441, 539, 968
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	5 cut(s)	6, 501, 506, 516, 939
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	704, 790, 1093
HapII	CCGG	2 cut(s)	36, 676
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	7 cut(s)	13, 73, 277, 629, 781, 852, 991
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HincII	GTYRAC	2 cut(s)	286, 559
HindII	GTYRAC	2 cut(s)	286, 559
HinfI	GANTC	2 cut(s)	129, 257
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	2 cut(s)	36, 676
HphI	GGTGA	3 cut(s)	587, 809, 908
Hpy166II	GTNNAC	2 cut(s)	286, 559
Hpy188I	TCNGA	2 cut(s)	262, 763
Hpy188III	TCNNGA	6 cut(s)	70, 232, 254, 368, 425, 689
Hpy8I	GTNNAC	2 cut(s)	286, 559
HpyAV	CCTTC	3 cut(s)	203, 231, 299
HpyCH4III	ACNGT	3 cut(s)	398, 599, 634
HpyCH4V	TGCA	6 cut(s)	277, 515, 592, 625, 861, 941
HpyF10VI	GCNNNNNNNGC	5 cut(s)	274, 524, 858, 926, 935
HpyF3I	CTNAG	2 cut(s)	148, 318
Hsp92II	CATG	7 cut(s)	13, 73, 277, 629, 781, 852, 991
HspAI	GCGC	1 cut(s)	503
KroI	GCCGGC	1 cut(s)	675
KroNI	GCCGGC	1 cut(s)	677
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	262, 307, 691, 758, 971
LmnI	GCTCC	3 cut(s)	256, 338, 389
Lsp1109I	GCAGC	5 cut(s)	17, 487, 517, 527, 925
LweI	GCATC	2 cut(s)	601, 943
MaeI	CTAG	6 cut(s)	51, 270, 323, 441, 539, 968
MaeIII	GTNAC	2 cut(s)	797, 896
MalI	GATC	5 cut(s)	264, 309, 693, 760, 973
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	5 cut(s)	262, 307, 691, 758, 971
MboII	GAAGA	3 cut(s)	138, 501, 880
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	8 cut(s)	100, 345, 414, 620, 818, 832, 1031, 1098
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	54, 178, 228, 718, 820, 1083
MroNI	GCCGGC	1 cut(s)	675
MseI	TTAA	5 cut(s)	495, 558, 699, 708, 1110
MslI	CAYNNNNRTG	1 cut(s)	597
MspCI	CTTAAG	1 cut(s)	698
MspI	CCGG	2 cut(s)	36, 676
MspR9I	CCNGG	2 cut(s)	189, 756
MvaI	CCWGG	2 cut(s)	189, 756
MwoI	GCNNNNNNNGC	5 cut(s)	274, 524, 858, 926, 935
NaeI	GCCGGC	1 cut(s)	677
NdeII	GATC	5 cut(s)	262, 307, 691, 758, 971
NgoMIV	GCCGGC	1 cut(s)	675
NlaIII	CATG	7 cut(s)	13, 73, 277, 629, 781, 852, 991
NlaIV	GGNNCC	2 cut(s)	40, 252
NmuCI	GTSAC	2 cut(s)	797, 896
NsbI	TGCGCA	1 cut(s)	504
NspI	RCATGY	2 cut(s)	277, 852
PaeI	GCATGC	1 cut(s)	277
PagI	TCATGA	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	790
PdiI	GCCGGC	1 cut(s)	677
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	2 cut(s)	902, 988
PkrI	GCNGC	5 cut(s)	7, 502, 507, 517, 940
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	187, 754
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	2 cut(s)	187, 754
PspN4I	GGNNCC	2 cut(s)	40, 252
PspPI	GGNCC	3 cut(s)	38, 703, 1092
PsuI	RGATCY	1 cut(s)	262
PsyI	GACNNNGTC	2 cut(s)	902, 988
RsaI	GTAC	3 cut(s)	316, 966, 1013
RsaNI	GTAC	3 cut(s)	315, 965, 1012
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	5 cut(s)	495, 558, 699, 708, 1110
SatI	GCNGC	5 cut(s)	6, 501, 506, 516, 939
Sau3AI	GATC	5 cut(s)	262, 307, 691, 758, 971
Sau96I	GGNCC	3 cut(s)	38, 703, 1092
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	2 cut(s)	189, 756
SduI	GDGCHC	1 cut(s)	451
SfaNI	GCATC	2 cut(s)	601, 943
SfcI	CTRYAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	232, 698
SmoI	CTYRAG	2 cut(s)	232, 698
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	8 cut(s)	100, 345, 414, 620, 818, 832, 1031, 1098
SseBI	AGGCCT	1 cut(s)	790
SsiI	CCGC	2 cut(s)	266, 436
SspMI	CTAG	6 cut(s)	51, 270, 323, 441, 539, 968
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	2 cut(s)	187, 754
StyI	CCWWGG	1 cut(s)	909
TaaI	ACNGT	3 cut(s)	398, 599, 634
TaqI	TCGA	5 cut(s)	200, 224, 306, 732, 1000
TasI	AATT	8 cut(s)	100, 345, 414, 620, 818, 832, 1031, 1098
TatI	WGTACW	2 cut(s)	314, 964
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	5 cut(s)	495, 558, 699, 708, 1110
Tru9I	TTAA	5 cut(s)	495, 558, 699, 708, 1110
TscAI	CASTG	2 cut(s)	156, 517
TseFI	GTSAC	2 cut(s)	797, 896
TseI	GCWGC	5 cut(s)	5, 500, 505, 515, 938
Tsp45I	GTSAC	2 cut(s)	797, 896
TspDTI	ATGAA	4 cut(s)	186, 794, 828, 1014
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	2 cut(s)	156, 517
Tth111I	GACNNNGTC	2 cut(s)	902, 988
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	3 cut(s)	818, 832, 1098
XceI	RCATGY	2 cut(s)	277, 852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XspI	CTAG	6 cut(s)	51, 270, 323, 441, 539, 968
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.