Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

32020995 .. 32027066

Gene Structure 6072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG285700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCAAGATGTCAACCTTTTGTATCAGTTTTTCGATCAAAGTACTAAGCTAGTGGTATTGACTGGAGCTGGAATTAGCACAGAATGTGGTATTCCCGACTACAGAAGTCCAAATGGAGCTTACAGTTCTGGTTTCAAACCAATTACCCATCAGGAGTTTCTCCGCTCTAGTCGGGCTCGTAGGCGTTATTGGGCAAGGAGTTATGCTGGGTGGAGAAGATTTAATGCTGCGCAGCCCAGTGCAGCTCATATTGCTTTATCATCACTAGAAAAAGCTGGTCGGGTTAACTTGATGATTACGCAAAATGTTGATAGGTTGCATCACCGTGCTGGTAGCAATCCAGTTGAATTGCATGGAACTGTTTATTCCGTGATTTGTATAGATTGTGGTTTTTCCTTTTGCCGGCATATATTTCAGGATCAACTTAAGGCCCTTAATCCAAAGTGGGCAGAGGCAATCGAAAGTTTGGACTATGGCAACCCTGGATCAGACAAGAGCTTTGGCATGAAGCAAAGGCCTGATGGTGACATTGAGATTGATGAAAAATTTTGGGAGGAGAATTTTCACATCCCTACATGCCAAAAGTGCAATGGAGTGCTGAAGCCTGATGTTGTCTTCTTTGGTGACAATGTCCCCAAGGACAGAGCTGATAAGGCAATCCAAGCTGCAAAAGAATGTGATGCTTTTCTTGTACTAGGATCATCTGTAATGACCATGTCTGCTTTTCGACTTGTCAGAGCTGCACATGAGGCAGGTGCTGCCACTGCAATTGTAAATGTTGGAGTGACTCGAGCTGATAATTTTGTACCTTTGAAAATCAATGCTCGACTAGGAGAGATTTTGCCAAGAGTGCTTCACATGGGATCCCTCAGCGTTCCTGCGTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

296

Amino Acids

32.8

Weight (kDa)

8.81

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIR2	PF02146	22 - 237	6.1e-42	Sir2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	743
Acc16I	TGCGCA	1 cut(s)	231
Acc36I	ACCTGC	1 cut(s)	743
AccBSI	CCGCTC	1 cut(s)	165
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	5 cut(s)	426, 493, 706, 858, 871
AcsI	RAATTY	2 cut(s)	545, 559
AcuI	CTGAAG	1 cut(s)	620
AfaI	GTAC	3 cut(s)	43, 693, 807
AfiI	CCNNNNNNNGG	1 cut(s)	402
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	136, 347, 814
AjnI	CCWGG	2 cut(s)	481, 884
AlwI	GGATC	5 cut(s)	426, 493, 706, 858, 871
AlwNI	CAGNNNCTG	1 cut(s)	758
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	2 cut(s)	429, 515
ApeKI	GCWGC	6 cut(s)	227, 232, 242, 665, 740, 758
ApoI	RAATTY	2 cut(s)	545, 559
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	314, 536, 635
AvaI	CYCGRG	1 cut(s)	789
BamHI	GGATCC	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	607
BbvCI	CCTCAGC	1 cut(s)	869
BbvI	GCAGC	6 cut(s)	214, 244, 254, 652, 727, 745
BccI	CCATC	2 cut(s)	156, 515
BciT130I	CCWGG	2 cut(s)	483, 886
BfaI	CTAG	5 cut(s)	50, 168, 266, 695, 830
BfmI	CTRYAG	1 cut(s)	100
BfrI	CTTAAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	743
BisI	GCNGC	6 cut(s)	228, 233, 243, 666, 741, 759
BlsI	GCNGC	6 cut(s)	229, 234, 244, 667, 742, 760
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	483, 886
BmeT110I	CYCGRG	1 cut(s)	789
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	865
BmrFI	CCNGG	2 cut(s)	483, 886
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	328, 670
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	607
BpmI	CTGGAG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	869
BsaJI	CCNNGG	2 cut(s)	481, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	3 cut(s)	67, 237, 341
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	2 cut(s)	483, 886
BseDI	CCNNGG	2 cut(s)	481, 636
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	1 cut(s)	883
BseNI	ACTGG	3 cut(s)	67, 237, 341
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	6 cut(s)	214, 244, 254, 652, 727, 745
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	2 cut(s)	261, 726
BshFI	GGCC	2 cut(s)	431, 517
BsiHKCI	CYCGRG	1 cut(s)	789
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	431, 517
BsoBI	CYCGRG	1 cut(s)	789
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	5 cut(s)	34, 418, 485, 698, 863
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	431, 517
BspCNI	CTCAG	1 cut(s)	882
BspLI	GGNNCC	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	743
BspPI	GGATC	5 cut(s)	426, 493, 706, 858, 871
BspTI	CTTAAG	1 cut(s)	425
BsrBI	CCGCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	67, 237, 341
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	481, 636
BssMI	GATC	5 cut(s)	34, 418, 485, 698, 863
BssT1I	CCWWGG	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	483, 886
Bst4CI	ACNGT	3 cut(s)	125, 326, 361
BstAFI	CTTAAG	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	45, 869
BstF5I	GGATG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	5 cut(s)	37, 421, 488, 701, 866
BstMBI	GATC	5 cut(s)	34, 418, 485, 698, 863
BstMWI	GCNNNNNNNGC	8 cut(s)	251, 585, 653, 662, 749, 758, 764, 850
BstNI	CCWGG	2 cut(s)	483, 886
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	481, 884
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	6 cut(s)	214, 244, 254, 652, 727, 745
BstV2I	GAAGAC	1 cut(s)	607
BstX2I	RGATCY	1 cut(s)	863
BstYI	RGATCY	1 cut(s)	863
BsuRI	GGCC	2 cut(s)	431, 517
BtsCI	GGATG	1 cut(s)	567
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	244, 762
BveI	ACCTGC	1 cut(s)	743
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	3 cut(s)	42, 692, 806
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	6 cut(s)	353, 505, 576, 715, 746, 859
CviQI	GTAC	3 cut(s)	42, 692, 806
DdeI	CTNAG	2 cut(s)	45, 869
DpnI	GATC	5 cut(s)	36, 420, 487, 700, 865
DpnII	GATC	5 cut(s)	34, 418, 485, 698, 863
Eco130I	CCWWGG	1 cut(s)	636
Eco147I	AGGCCT	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	620
Eco88I	CYCGRG	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	481, 884
EcoT14I	CCWWGG	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	6 cut(s)	356, 508, 579, 718, 749, 862
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	6 cut(s)	352, 504, 575, 714, 745, 858
Fnu4HI	GCNGC	6 cut(s)	228, 233, 243, 666, 741, 759
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	6 cut(s)	228, 233, 243, 666, 741, 759
FspBI	CTAG	5 cut(s)	50, 168, 266, 695, 830
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	6 cut(s)	228, 233, 243, 666, 741, 759
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	431, 517
HapII	CCGG	1 cut(s)	403
HgaI	GACGC	1 cut(s)	870
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	6 cut(s)	356, 508, 579, 718, 749, 862
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	2 cut(s)	13, 286
HindII	GTYRAC	2 cut(s)	13, 286
HinfI	GANTC	1 cut(s)	787
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	3 cut(s)	314, 536, 635
Hpy166II	GTNNAC	2 cut(s)	13, 286
Hpy188I	TCNGA	2 cut(s)	490, 737
Hpy188III	TCNNGA	3 cut(s)	95, 152, 416
Hpy8I	GTNNAC	2 cut(s)	13, 286
HpyCH4III	ACNGT	3 cut(s)	125, 326, 361
HpyCH4V	TGCA	8 cut(s)	4, 242, 319, 352, 588, 668, 743, 767
HpyF10VI	GCNNNNNNNGC	8 cut(s)	251, 585, 653, 662, 749, 758, 764, 850
HpyF3I	CTNAG	2 cut(s)	45, 869
Hsp92II	CATG	6 cut(s)	356, 508, 579, 718, 749, 862
HspAI	GCGC	1 cut(s)	230
KroI	GCCGGC	1 cut(s)	402
KroNI	GCCGGC	1 cut(s)	404
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	34, 418, 485, 698, 863
LmnI	GCTCC	2 cut(s)	65, 116
Lsp1109I	GCAGC	6 cut(s)	214, 244, 254, 652, 727, 745
LweI	GCATC	2 cut(s)	328, 670
MaeI	CTAG	5 cut(s)	50, 168, 266, 695, 830
MaeIII	GTNAC	3 cut(s)	524, 623, 784
MalI	GATC	5 cut(s)	36, 420, 487, 700, 865
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	5 cut(s)	34, 418, 485, 698, 863
MboII	GAAGA	2 cut(s)	228, 607
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	863
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	7 cut(s)	72, 141, 347, 545, 559, 768, 799
MlyI	GAGTC	1 cut(s)	781
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	4 cut(s)	445, 547, 742, 878
MroNI	GCCGGC	1 cut(s)	402
MseI	TTAA	4 cut(s)	222, 285, 426, 435
MslI	CAYNNNNRTG	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	483, 886
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	2 cut(s)	483, 886
MwoI	GCNNNNNNNGC	8 cut(s)	251, 585, 653, 662, 749, 758, 764, 850
NaeI	GCCGGC	1 cut(s)	404
NdeII	GATC	5 cut(s)	34, 418, 485, 698, 863
NgoMIV	GCCGGC	1 cut(s)	402
NlaIII	CATG	6 cut(s)	356, 508, 579, 718, 749, 862
NlaIV	GGNNCC	1 cut(s)	865
NmuCI	GTSAC	3 cut(s)	524, 623, 784
NsbI	TGCGCA	1 cut(s)	231
NspI	RCATGY	1 cut(s)	579
PaeR7I	CTCGAG	1 cut(s)	789
PaqCI	CACCTGC	1 cut(s)	743
PceI	AGGCCT	1 cut(s)	517
PdiI	GCCGGC	1 cut(s)	404
PflFI	GACNNNGTC	2 cut(s)	629, 715
PkrI	GCNGC	6 cut(s)	229, 234, 244, 667, 742, 760
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
Psp6I	CCWGG	2 cut(s)	481, 884
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	481, 884
PspN4I	GGNNCC	1 cut(s)	865
PspPI	GGNCC	1 cut(s)	430
PspXI	VCTCGAGB	1 cut(s)	789
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	863
PsyI	GACNNNGTC	2 cut(s)	629, 715
RsaI	GTAC	3 cut(s)	43, 693, 807
RsaNI	GTAC	3 cut(s)	42, 692, 806
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	4 cut(s)	222, 285, 426, 435
SatI	GCNGC	6 cut(s)	228, 233, 243, 666, 741, 759
Sau3AI	GATC	5 cut(s)	34, 418, 485, 698, 863
Sau96I	GGNCC	1 cut(s)	430
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	2 cut(s)	483, 886
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	328, 670
SfcI	CTRYAG	1 cut(s)	100
Sfr274I	CTCGAG	1 cut(s)	789
SlaI	CTCGAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	425, 789
SmoI	CTYRAG	2 cut(s)	425, 789
Sse9I	AATT	7 cut(s)	72, 141, 347, 545, 559, 768, 799
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	5 cut(s)	50, 168, 266, 695, 830
StuI	AGGCCT	1 cut(s)	517
StyD4I	CCNGG	2 cut(s)	481, 884
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	3 cut(s)	125, 326, 361
TaqI	TCGA	5 cut(s)	33, 459, 727, 790, 826
TasI	AATT	7 cut(s)	72, 141, 347, 545, 559, 768, 799
TatI	WGTACW	2 cut(s)	41, 691
Tru1I	TTAA	4 cut(s)	222, 285, 426, 435
Tru9I	TTAA	4 cut(s)	222, 285, 426, 435
TscAI	CASTG	2 cut(s)	244, 769
TseFI	GTSAC	3 cut(s)	524, 623, 784
TseI	GCWGC	6 cut(s)	227, 232, 242, 665, 740, 758
Tsp45I	GTSAC	3 cut(s)	524, 623, 784
TspDTI	ATGAA	2 cut(s)	521, 555
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	2 cut(s)	244, 769
Tth111I	GACNNNGTC	2 cut(s)	629, 715
Vha464I	CTTAAG	1 cut(s)	425
XapI	RAATTY	2 cut(s)	545, 559
XceI	RCATGY	1 cut(s)	579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	789
XspI	CTAG	5 cut(s)	50, 168, 266, 695, 830
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.