Rroxscaffold_2G00121420

NAD-dependent protein deacylase. Catalyzes the NAD- dependent hydrolysis of acyl groups from lysine residues

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
54045879 .. 54051612
5734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121420.1

Sequence Viewer

Length: 1119 bp
ATGAGGAATATCATGGCAGGCAAGTCTGCTCTTGTTACACCCAAGTTTATAGTATCAGTAACCCTGCCTCTGCTACTTTGCCACTATGTTCCATTTGAGACTTTGAGTGATGCTATGTTCTTGAAATCGCTTATGCTATACAGATGCACTTCGTCGACAAGAGAAGGAAAAGTGCCTTCGAGCTTCTTGAGGGACAAGAAGTTGGCTCCTGATTCAGATCCGCCTAGCATGCAAGATGTCAACCTTTTGTATCAGTTTTTCGATCAAAGTACTAAGCTAGTGGTATTGACTGGAGCTGGAATTAGCACAGAATGTGGTATTCCGGACTACAGAAGTCCAAATGGAGCTTACAGTTCTGGTTTCAAACCAATTACCCATCAGGAGTTTCTCCGCTCTAGTCGGGCTCGTAGGCGTTATTGGGCAAGGAGTTATGCAGGGTGGAGAAGATTTAATGCTGCGCAGCCCAGTGCAGCTCATATTGCTTTATCATCACTAGAAAAAGCTGGTCGGATTAACTTGATGATTACGCAAAATGTTGATAGGTTGCATCACCGTGCTGGTAGCAATCCAGTTGAATTGCATGGAACTGTTTATTCCGTGATTTGTATAGATTGTGGTTTTTCCTTTTGCCGGCATATATTTCAGGATCAACTTAAGGCCCTTAATCCAAAGTGGGCAGAGGCAATCGAAAGTTTGGACTATGGCAACCCTGGATCAGACAAGAGCTTTGGCATGAAGCAAAGGCCTGATGGTGACATTGAGATTGATGAAAAATTTTGGGAGGAGAATTTTCACATCCCTACATGCCAAAAGTGCAATGGAGTGCTGAAGCCTGATGTTGTCTTCTTTGGTGACAATGTCCCCAAGGACAGAGCTGATAAGGCAATCCAAGCTGCAAAAGAATGTGATGCTTTTCTTGTACTAGGATCATCTGTAATGACCATGTCTGCTTTTCGACTTGTCAGAGCTGCACATGAGGCAGGTGCTGCCACTGCAATTGTAAATGTTGGAGTGACTCGAGCTGATAATTTTGTACCTTTGAAAATCAATGCTCGACTAGGAGAGATTTTGCCAAGAGTGCTTCACATGGGATCCCTCAGCGTCCCTGCGTCCAGGTGA

Protein Analysis

372

Amino Acids

41.25

Weight (kDa)

9.08

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 98 - 313 1.6e-41 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 971
Acc16I TGCGCA 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 971
AccBSI CCGCTC 1 cut(s) 393
AccI GTMKAC 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 2 cut(s) 221, 391
AclWI GGATC 6 cut(s) 212, 654, 721, 934, 1086, 1099
AcsI RAATTY 2 cut(s) 773, 787
AcuI CTGAAG 1 cut(s) 848
AfaI GTAC 3 cut(s) 271, 921, 1035
AfiI CCNNNNNNNGG 1 cut(s) 630
AflII CTTAAG 1 cut(s) 653
AgsI TTSAA 4 cut(s) 124, 364, 575, 1042
AjnI CCWGG 2 cut(s) 709, 1112
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 6 cut(s) 212, 654, 721, 934, 1086, 1099
AlwNI CAGNNNCTG 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 1017
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 2 cut(s) 657, 743
ApeKI GCWGC 6 cut(s) 455, 460, 470, 893, 968, 986
ApoI RAATTY 2 cut(s) 773, 787
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 3 cut(s) 542, 764, 863
AvaI CYCGRG 1 cut(s) 1017
BamHI GGATCC 1 cut(s) 1091
BanII GRGCYC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 835
BbvCI CCTCAGC 1 cut(s) 1097
BbvI GCAGC 6 cut(s) 442, 472, 482, 880, 955, 973
BccI CCATC 2 cut(s) 384, 743
BciT130I CCWGG 2 cut(s) 711, 1114
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 6 cut(s) 225, 278, 396, 494, 923, 1058
BfmI CTRYAG 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 971
BisI GCNGC 6 cut(s) 456, 461, 471, 894, 969, 987
BlsI GCNGC 6 cut(s) 457, 462, 472, 895, 970, 988
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 711, 1114
BmeT110I CYCGRG 1 cut(s) 1017
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 2 cut(s) 207, 1093
BmrFI CCNGG 2 cut(s) 711, 1114
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 4 cut(s) 100, 134, 556, 898
BmuI ACTGGG 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 835
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 1097
BpuEI CTTGAG 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 709, 864
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 630
Bse118I RCCGGY 1 cut(s) 630
Bse1I ACTGG 3 cut(s) 295, 465, 569
Bse3DI GCAATG 1 cut(s) 823
Bse8I GATNNNNATC 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 2 cut(s) 711, 1114
BseDI CCNNGG 2 cut(s) 709, 864
BseGI GGATG 1 cut(s) 795
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 630
BseMI GCAATG 1 cut(s) 823
BseMII CTCAG 1 cut(s) 1111
BseNI ACTGG 3 cut(s) 295, 465, 569
BseRI GAGGAG 1 cut(s) 797
BseXI GCAGC 6 cut(s) 442, 472, 482, 880, 955, 973
BsgI GTGCAG 2 cut(s) 489, 954
BshFI GGCC 2 cut(s) 659, 745
BsiHKCI CYCGRG 1 cut(s) 1017
BsiSI CCGG 2 cut(s) 323, 631
BslFI GGGAC 3 cut(s) 206, 845, 1088
BslI CCNNNNNNNGG 1 cut(s) 630
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 3 cut(s) 206, 845, 1088
BsnI GGCC 2 cut(s) 659, 745
BsoBI CYCGRG 1 cut(s) 1017
Bsp1286I GDGCHC 1 cut(s) 406
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 6 cut(s) 217, 262, 646, 713, 926, 1091
BspACI CCGC 2 cut(s) 221, 391
BspANI GGCC 2 cut(s) 659, 745
BspCNI CTCAG 1 cut(s) 1110
BspEI TCCGGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 207, 1093
BspMI ACCTGC 1 cut(s) 971
BspPI GGATC 6 cut(s) 212, 654, 721, 934, 1086, 1099
BspTI CTTAAG 1 cut(s) 653
BsrBI CCGCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 823
BsrFI RCCGGY 1 cut(s) 630
BsrI ACTGG 3 cut(s) 295, 465, 569
BssAI RCCGGY 1 cut(s) 630
BssECI CCNNGG 2 cut(s) 709, 864
BssMI GATC 6 cut(s) 217, 262, 646, 713, 926, 1091
BssT1I CCWWGG 1 cut(s) 864
Bst2UI CCWGG 2 cut(s) 711, 1114
Bst4CI ACNGT 3 cut(s) 353, 554, 589
BstAFI CTTAAG 1 cut(s) 653
BstAPI GCANNNNNTGC 1 cut(s) 986
BstC8I GCNNGC 3 cut(s) 19, 230, 632
BstDEI CTNAG 2 cut(s) 273, 1097
BstF5I GGATG 1 cut(s) 795
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 6 cut(s) 220, 265, 649, 716, 929, 1094
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 6 cut(s) 217, 262, 646, 713, 926, 1091
BstMWI GCNNNNNNNGC 9 cut(s) 229, 479, 813, 881, 890, 977, 986, 992, 1078
BstNI CCWGG 2 cut(s) 711, 1114
BstNSI RCATGY 2 cut(s) 232, 807
BstSCI CCNGG 2 cut(s) 709, 1112
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 6 cut(s) 442, 472, 482, 880, 955, 973
BstV2I GAAGAC 1 cut(s) 835
BstX2I RGATCY 2 cut(s) 217, 1091
BstYI RGATCY 2 cut(s) 217, 1091
BsuRI GGCC 2 cut(s) 659, 745
BtsCI GGATG 1 cut(s) 795
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 2 cut(s) 472, 990
BveI ACCTGC 1 cut(s) 971
Cac8I GCNNGC 3 cut(s) 19, 230, 632
CaiI CAGNNNCTG 1 cut(s) 986
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 658
CseI GACGC 2 cut(s) 1090, 1098
Csp6I GTAC 3 cut(s) 270, 920, 1034
CspCI CAANNNNNGTGG 2 cut(s) 979, 1014
CviAII CATG 8 cut(s) 13, 229, 581, 733, 804, 943, 974, 1087
CviQI GTAC 3 cut(s) 270, 920, 1034
DdeI CTNAG 2 cut(s) 273, 1097
DpnI GATC 6 cut(s) 219, 264, 648, 715, 928, 1093
DpnII GATC 6 cut(s) 217, 262, 646, 713, 926, 1091
EciI GGCGGA 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 864
Eco147I AGGCCT 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 848
Eco88I CYCGRG 1 cut(s) 1017
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 2 cut(s) 709, 1112
EcoT14I CCWWGG 1 cut(s) 864
EcoT38I GRGCYC 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 864
FaeI CATG 8 cut(s) 16, 232, 584, 736, 807, 946, 977, 1090
FaqI GGGAC 3 cut(s) 206, 845, 1088
FatI CATG 8 cut(s) 12, 228, 580, 732, 803, 942, 973, 1086
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 6 cut(s) 456, 461, 471, 894, 969, 987
FokI GGATG 1 cut(s) 782
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 6 cut(s) 456, 461, 471, 894, 969, 987
FspBI CTAG 6 cut(s) 225, 278, 396, 494, 923, 1058
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 1 cut(s) 459
GluI GCNGC 6 cut(s) 456, 461, 471, 894, 969, 987
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 2 cut(s) 659, 745
HapII CCGG 2 cut(s) 323, 631
HgaI GACGC 2 cut(s) 1090, 1098
HhaI GCGC 1 cut(s) 460
Hin1II CATG 8 cut(s) 16, 232, 584, 736, 807, 946, 977, 1090
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 2 cut(s) 156, 241
HindII GTYRAC 2 cut(s) 156, 241
HinfI GANTC 2 cut(s) 212, 1015
HpaII CCGG 2 cut(s) 323, 631
HphI GGTGA 3 cut(s) 542, 764, 863
Hpy166II GTNNAC 2 cut(s) 156, 241
Hpy188I TCNGA 4 cut(s) 217, 510, 718, 965
Hpy188III TCNNGA 6 cut(s) 121, 187, 209, 323, 380, 644
Hpy8I GTNNAC 2 cut(s) 156, 241
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 158, 186
HpyCH4III ACNGT 3 cut(s) 353, 554, 589
HpyF10VI GCNNNNNNNGC 9 cut(s) 229, 479, 813, 881, 890, 977, 986, 992, 1078
HpyF3I CTNAG 2 cut(s) 273, 1097
Hsp92II CATG 8 cut(s) 16, 232, 584, 736, 807, 946, 977, 1090
HspAI GCGC 1 cut(s) 458
Kpn2I TCCGGA 1 cut(s) 322
KroI GCCGGC 1 cut(s) 630
KroNI GCCGGC 1 cut(s) 632
Kzo9I GATC 6 cut(s) 217, 262, 646, 713, 926, 1091
LmnI GCTCC 3 cut(s) 211, 293, 344
Lsp1109I GCAGC 6 cut(s) 442, 472, 482, 880, 955, 973
LweI GCATC 4 cut(s) 100, 134, 556, 898
MaeI CTAG 6 cut(s) 225, 278, 396, 494, 923, 1058
MaeIII GTNAC 5 cut(s) 34, 58, 752, 851, 1012
MalI GATC 6 cut(s) 219, 264, 648, 715, 928, 1093
MbiI CCGCTC 1 cut(s) 393
MboI GATC 6 cut(s) 217, 262, 646, 713, 926, 1091
MboII GAAGA 2 cut(s) 456, 835
MfeI CAATTG 1 cut(s) 996
MflI RGATCY 2 cut(s) 217, 1091
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 7 cut(s) 300, 369, 575, 773, 787, 996, 1027
MlyI GAGTC 1 cut(s) 1009
MmeI TCCRAC 2 cut(s) 488, 988
MnlI CCTC 6 cut(s) 78, 183, 673, 775, 970, 1106
MroI TCCGGA 1 cut(s) 322
MroNI GCCGGC 1 cut(s) 630
MseI TTAA 4 cut(s) 450, 513, 654, 663
MslI CAYNNNNRTG 1 cut(s) 552
MspCI CTTAAG 1 cut(s) 653
MspI CCGG 2 cut(s) 323, 631
MspR9I CCNGG 2 cut(s) 711, 1114
MunI CAATTG 1 cut(s) 996
MvaI CCWGG 2 cut(s) 711, 1114
MwoI GCNNNNNNNGC 9 cut(s) 229, 479, 813, 881, 890, 977, 986, 992, 1078
NaeI GCCGGC 1 cut(s) 632
NdeII GATC 6 cut(s) 217, 262, 646, 713, 926, 1091
NgoMIV GCCGGC 1 cut(s) 630
NlaIII CATG 8 cut(s) 16, 232, 584, 736, 807, 946, 977, 1090
NlaIV GGNNCC 2 cut(s) 207, 1093
NmuCI GTSAC 3 cut(s) 752, 851, 1012
NsbI TGCGCA 1 cut(s) 459
NspI RCATGY 2 cut(s) 232, 807
PaeI GCATGC 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 1017
PaqCI CACCTGC 1 cut(s) 971
PceI AGGCCT 1 cut(s) 745
PdiI GCCGGC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 212
PflFI GACNNNGTC 2 cut(s) 857, 943
PkrI GCNGC 6 cut(s) 457, 462, 472, 895, 970, 988
PleI GAGTC 1 cut(s) 1009
PpsI GAGTC 1 cut(s) 1009
Psp6I CCWGG 2 cut(s) 709, 1112
PspGI CCWGG 2 cut(s) 709, 1112
PspN4I GGNNCC 2 cut(s) 207, 1093
PspPI GGNCC 1 cut(s) 658
PspXI VCTCGAGB 1 cut(s) 1017
PstNI CAGNNNCTG 1 cut(s) 986
PsuI RGATCY 2 cut(s) 217, 1091
PsyI GACNNNGTC 2 cut(s) 857, 943
RsaI GTAC 3 cut(s) 271, 921, 1035
RsaNI GTAC 3 cut(s) 270, 920, 1034
RseI CAYNNNNRTG 1 cut(s) 552
SalI GTCGAC 1 cut(s) 154
SaqAI TTAA 4 cut(s) 450, 513, 654, 663
SatI GCNGC 6 cut(s) 456, 461, 471, 894, 969, 987
Sau3AI GATC 6 cut(s) 217, 262, 646, 713, 926, 1091
Sau96I GGNCC 1 cut(s) 658
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 1009
ScrFI CCNGG 2 cut(s) 711, 1114
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 4 cut(s) 100, 134, 556, 898
SfcI CTRYAG 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 1017
SlaI CTCGAG 1 cut(s) 1017
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 3 cut(s) 187, 653, 1017
SmoI CTYRAG 3 cut(s) 187, 653, 1017
SphI GCATGC 1 cut(s) 232
Sse9I AATT 7 cut(s) 300, 369, 575, 773, 787, 996, 1027
SseBI AGGCCT 1 cut(s) 745
SsiI CCGC 2 cut(s) 221, 391
SspMI CTAG 6 cut(s) 225, 278, 396, 494, 923, 1058
StuI AGGCCT 1 cut(s) 745
StyD4I CCNGG 2 cut(s) 709, 1112
StyI CCWWGG 1 cut(s) 864
TaaI ACNGT 3 cut(s) 353, 554, 589
TaqI TCGA 7 cut(s) 155, 179, 261, 687, 955, 1018, 1054
TasI AATT 7 cut(s) 300, 369, 575, 773, 787, 996, 1027
TatI WGTACW 2 cut(s) 269, 919
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 4 cut(s) 450, 513, 654, 663
Tru9I TTAA 4 cut(s) 450, 513, 654, 663
TscAI CASTG 2 cut(s) 472, 997
TseFI GTSAC 3 cut(s) 752, 851, 1012
TseI GCWGC 6 cut(s) 455, 460, 470, 893, 968, 986
Tsp45I GTSAC 3 cut(s) 752, 851, 1012
TspDTI ATGAA 2 cut(s) 749, 783
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 2 cut(s) 472, 997
Tth111I GACNNNGTC 2 cut(s) 857, 943
Vha464I CTTAAG 1 cut(s) 653
XapI RAATTY 2 cut(s) 773, 787
XceI RCATGY 2 cut(s) 232, 807
XcmI CCANNNNNNNNNTGG 1 cut(s) 815
XhoI CTCGAG 1 cut(s) 1017
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 6 cut(s) 225, 278, 396, 494, 923, 1058
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.