Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002661

Physical Location & Seq

Genomic Coordinates Forward (+)

24693363 .. 24698163

Gene Structure 4801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0240500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGAGGGTGGCCTCCCTACGAGGTACCGGTCGACCTCCACCATAGCGAGGTAGCTCGGGTGTCGGACTACCGGATGCATGTCGTAGGCGGGACTAACCATGTCGCGGGGCCCACCTATGAGGTCGTTGCTTATGCTTGGCGTGATTGTGAAGTGATAGCGCATCTTTATGAGGAACATGGGGAAGAATTTGTTGACATGCTGGACGGGATGTTCTCCTTTGTCCTCCTTGATACAAGAGACAACACCTTCATGGCAGCTGGAGACGCTATTGGCATAACCCCACTGTACATGGGCTGGGGTCTTGATGGATCAATTTGGTTTGCTTCAGAAATGAAAGCTATAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGTATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGATGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGATTCCTTATGGCGAGGCTTTTGAGAAGGCCGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTCGTCCGGAGGGTTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCAAGTCAGTGGGGGTCACAGTTACATACCTTTTGCGTTGGCTTGGAGTCTTCAAGGTTCTCCAGATTTGAAAGCAGCAAGAGAATGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGCATAGATGCGCTTCAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTATCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAAATTAAATCTCTGGGAGTAAAAATGGTTCTTTCTGGGGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTGACCAAGAAACATGCCACAAGCTTGGGGTGTTGACTGTTGAGGCTCGTGTACCATTTCTTGACAAAGAATTCATCAAGACTGCTATGGACATTGATCCAGAAGACCAGAATGGAAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031347 GO:0031348 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043970 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0051276 GO:0051704 GO:0051707 GO:0061647 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SIR2

Protein Analysis

346

Amino Acids

39.03

Weight (kDa)

5.07

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_7	PF13537	48 - 116	2.5e-20	Glutamine amidotransferase domain
GATase_6	PF13522	48 - 111	2.8e-12	Glutamine amidotransferase domain
DUF3700	PF12481	63 - 153	6.8e-13	Aluminium induced protein
Asn_synthase	PF00733	158 - 304	8.9e-36	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230 AT5G09230
fragaria_vesca	FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990 FvH4_1g24990
malus_domestica	MD00G1091800.v1.1
prunus_persica	Prupe.4G275900_v2.0.a1 Prupe.4G275900_v2.0.a1
pyrus_communis	pycom01g00050
rosa_chinensis	RchiOBHm_Chr2g0122631
rosa_laevigata	RLG00000018696
rosa_multiflora	Rmu_sc0003133.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121420 Rroxscaffold_4G00314940
rosa_rugosa	Rorug02G0240200 Rorug02G0240300 Rorug02G0240400 Rorug02G0240500 Rorug02G0240600
rosa_samantha	Rh2AG298700 Rh2BG307600 Rh2CG285700 Rh2DG322300
rosa_wichuraiana	Rw2G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	25
AccB1I	GGYRCC	2 cut(s)	25, 898
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	536
AciI	CCGC	2 cut(s)	90, 107
AclWI	GGATC	2 cut(s)	319, 1007
AcsI	RAATTY	2 cut(s)	188, 986
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	5 cut(s)	27, 290, 425, 516, 969
AfiI	CCNNNNNNNGG	2 cut(s)	49, 106
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	654, 671, 737
AjnI	CCWGG	1 cut(s)	379
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	56, 260, 341, 599, 940
AluI	AGCT	5 cut(s)	56, 260, 341, 599, 940
Alw26I	GTCTC	5 cut(s)	234, 258, 493, 752, 813
AlwI	GGATC	2 cut(s)	319, 1007
AlwNI	CAGNNNCTG	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	536
AoxI	GGCC	3 cut(s)	11, 110, 486
ApaI	GGGCCC	1 cut(s)	114
ApeKI	GCWGC	4 cut(s)	257, 563, 599, 675
ApoI	RAATTY	2 cut(s)	188, 986
AsiGI	ACCGGT	1 cut(s)	28
Asp718I	GGTACC	1 cut(s)	25
AspLEI	GCGC	2 cut(s)	163, 733
AspS9I	GGNCC	2 cut(s)	110, 111
AvaI	CYCGRG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanI	GGYRCC	2 cut(s)	25, 898
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	2 cut(s)	718, 963
BbsI	GAAGAC	2 cut(s)	642, 1026
BbvI	GCAGC	4 cut(s)	269, 550, 586, 687
BccI	CCATC	3 cut(s)	302, 414, 463
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	5 cut(s)	234, 258, 493, 752, 813
BfaI	CTAG	1 cut(s)	396
BisI	GCNGC	4 cut(s)	258, 564, 600, 676
BlsI	GCNGC	4 cut(s)	259, 565, 601, 677
Bme1390I	CCNGG	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	110, 111
BmiI	GGNNCC	4 cut(s)	27, 111, 112, 900
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	3 cut(s)	66, 172, 718
BpiI	GAAGAC	2 cut(s)	642, 1026
BpmI	CTGGAG	2 cut(s)	282, 646
Bsa29I	ATCGAT	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	3 cut(s)	28, 72, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 106
Bse118I	RCCGGY	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	367
BseAI	TCCGGA	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	2 cut(s)	81, 216
BseJI	GATNNNNATC	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	49, 106
BseMII	CTCAG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	926
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	4 cut(s)	269, 550, 586, 687
BseYI	CCCAGC	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	13, 112, 488
BshNI	GGYRCC	2 cut(s)	25, 898
BshTI	ACCGGT	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	29, 73, 537
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	49, 106
BsmAI	GTCTC	5 cut(s)	234, 258, 493, 752, 813
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	13, 112, 488
BsoBI	CYCGRG	1 cut(s)	57
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	311, 1012
BspACI	CCGC	2 cut(s)	90, 107
BspANI	GGCC	3 cut(s)	13, 112, 488
BspCNI	CTCAG	1 cut(s)	405
BspDI	ATCGAT	1 cut(s)	458
BspEI	TCCGGA	1 cut(s)	536
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	4 cut(s)	27, 111, 112, 900
BspPI	GGATC	2 cut(s)	319, 1007
BspT107I	GGYRCC	2 cut(s)	25, 898
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	311, 1012
BssSI	CACGAG	2 cut(s)	718, 963
Bst2BI	CACGAG	2 cut(s)	718, 963
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	288, 621, 955
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	81, 216
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	163, 733
BstKTI	GATC	2 cut(s)	314, 1015
BstMAI	GTCTC	5 cut(s)	234, 258, 493, 752, 813
BstMBI	GATC	2 cut(s)	311, 1012
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 569
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	3 cut(s)	83, 202, 933
BstSCI	CCNGG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	4 cut(s)	269, 550, 586, 687
BstV2I	GAAGAC	2 cut(s)	642, 1026
BstXI	CCANNNNNNTGG	1 cut(s)	941
Bsu15I	ATCGAT	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	13, 112, 488
BsuTUI	ATCGAT	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	81, 216
BtsIMutI	CAGTG	2 cut(s)	284, 614
Cac8I	GCNNGC	1 cut(s)	787
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	2 cut(s)	163, 733
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	110, 111
ClaI	ATCGAT	1 cut(s)	458
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	5 cut(s)	26, 289, 424, 515, 968
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	7 cut(s)	80, 101, 179, 199, 253, 292, 930
CviQI	GTAC	5 cut(s)	26, 289, 424, 515, 968
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	2 cut(s)	313, 1014
DpnII	GATC	2 cut(s)	311, 1012
Eco24I	GRGCYC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	986
EcoRII	CCWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	7 cut(s)	83, 104, 182, 202, 256, 295, 933
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	7 cut(s)	79, 100, 178, 198, 252, 291, 929
FauI	CCCGC	2 cut(s)	83, 100
FauNDI	CATATG	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	258, 564, 600, 676
FokI	GGATG	2 cut(s)	88, 223
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	258, 564, 600, 676
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	2 cut(s)	162, 732
GluI	GCNGC	4 cut(s)	258, 564, 600, 676
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	282, 646
HaeIII	GGCC	3 cut(s)	13, 112, 488
HapII	CCGG	3 cut(s)	29, 73, 537
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	163, 733
Hin1II	CATG	7 cut(s)	83, 104, 182, 202, 256, 295, 933
Hin6I	GCGC	2 cut(s)	161, 731
HinP1I	GCGC	2 cut(s)	161, 731
HincII	GTYRAC	3 cut(s)	34, 196, 951
HindII	GTYRAC	3 cut(s)	34, 196, 951
HindIII	AAGCTT	1 cut(s)	938
HinfI	GANTC	4 cut(s)	363, 460, 548, 647
HpaII	CCGG	3 cut(s)	29, 73, 537
Hpy166II	GTNNAC	4 cut(s)	34, 196, 951, 968
Hpy188I	TCNGA	5 cut(s)	67, 331, 595, 782, 862
Hpy188III	TCNNGA	8 cut(s)	305, 537, 663, 718, 737, 977, 994, 1016
Hpy8I	GTNNAC	4 cut(s)	34, 196, 951, 968
HpyAV	CCTTC	3 cut(s)	259, 478, 848
HpyCH4III	ACNGT	3 cut(s)	288, 621, 955
HpyCH4V	TGCA	3 cut(s)	79, 602, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 569
HpyF3I	CTNAG	1 cut(s)	413
Hsp92II	CATG	7 cut(s)	83, 104, 182, 202, 256, 295, 933
HspAI	GCGC	2 cut(s)	161, 731
Kpn2I	TCCGGA	1 cut(s)	536
KpnI	GGTACC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	311, 1012
Lsp1109I	GCAGC	4 cut(s)	269, 550, 586, 687
LweI	GCATC	3 cut(s)	66, 172, 718
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	615, 621, 769
MalI	GATC	2 cut(s)	313, 1014
MboI	GATC	2 cut(s)	311, 1012
MboII	GAAGA	5 cut(s)	197, 429, 460, 642, 1031
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	4 cut(s)	188, 315, 816, 986
MlyI	GAGTC	2 cut(s)	542, 656
MmeI	TCCRAC	2 cut(s)	45, 525
Mph1103I	ATGCAT	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	536
MseI	TTAA	2 cut(s)	494, 819
MslI	CAYNNNNRTG	3 cut(s)	168, 251, 794
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	3 cut(s)	29, 73, 537
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	266, 569
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	2 cut(s)	311, 1012
NlaIII	CATG	7 cut(s)	83, 104, 182, 202, 256, 295, 933
NlaIV	GGNNCC	4 cut(s)	27, 111, 112, 900
NmuCI	GTSAC	2 cut(s)	615, 769
NsiI	ATGCAT	1 cut(s)	81
NspI	RCATGY	3 cut(s)	83, 202, 933
PfeI	GAWTC	2 cut(s)	363, 460
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	4 cut(s)	259, 565, 601, 677
PleI	GAGTC	2 cut(s)	542, 655
PpsI	GAGTC	2 cut(s)	542, 655
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	4 cut(s)	27, 111, 112, 900
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	110, 111
PsrI	GAACNNNNNNTAC	2 cut(s)	825, 857
PstNI	CAGNNNCTG	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	5 cut(s)	27, 290, 425, 516, 969
RsaNI	GTAC	5 cut(s)	26, 289, 424, 515, 968
RseI	CAYNNNNRTG	3 cut(s)	168, 251, 794
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	494, 819
SatI	GCNGC	4 cut(s)	258, 564, 600, 676
Sau3AI	GATC	2 cut(s)	311, 1012
Sau96I	GGNCC	2 cut(s)	110, 111
SchI	GAGTC	2 cut(s)	542, 656
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	3 cut(s)	66, 172, 718
SmiMI	CAYNNNNRTG	3 cut(s)	168, 251, 794
Sse9I	AATT	4 cut(s)	188, 315, 816, 986
SsiI	CCGC	2 cut(s)	90, 107
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	3 cut(s)	288, 621, 955
TaqI	TCGA	2 cut(s)	33, 458
TasI	AATT	4 cut(s)	188, 315, 816, 986
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	363, 460
Tru1I	TTAA	2 cut(s)	494, 819
Tru9I	TTAA	2 cut(s)	494, 819
TscAI	CASTG	2 cut(s)	291, 614
TseFI	GTSAC	2 cut(s)	615, 769
TseI	GCWGC	4 cut(s)	257, 563, 599, 675
Tsp45I	GTSAC	2 cut(s)	615, 769
TspDTI	ATGAA	6 cut(s)	241, 350, 355, 701, 879, 979
TspRI	CASTG	2 cut(s)	291, 614
XapI	RAATTY	2 cut(s)	188, 986
XceI	RCATGY	3 cut(s)	83, 202, 933
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.