Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002995

Physical Location & Seq

Genomic Coordinates Reverse (-)

3137289 .. 3144269

Gene Structure 6981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAATACAACCTCGACACATTTTGTTCCACCGAGAAGGTTTGAAGTTTACGAGCCTCTCAACCAAATCGGTATGTGGGAAGAAAGTTTCAAGAACAATGGAGACATGTATACGCCTGGCTCTATCATAATCCCGACTAACGAAAAACCAGACAGCTTGTCAGAGGATACTTCTCATGGGACAGAAGGAACTCCTCACAAGTTTGACCAAGAGGCTTCCACATCTAGACATCCTGATAAGATACAGAGAAGGCTAGCACAGAATCGAGAGGCAGCTAGGAAAAGTCGTTTGCGCAAGAAAGCTTATGTTCAGCAGCTAGAGACTAGCCGGTTAAAGCTAATTCATTTAGAGCAAGAACTCGATCGTGCTAGACAACAGGGTTTCTATGTGGGGAACGGAGTAGATACCAATGCTCTTAGTTTCTCAGATAACATGAGCTCAGGGATTGTTGCATTTGAGATGGAATATGGACATTGGGTGGAAGAACAGAACAGGCAAATATGTGAACTAAGAACGGTTTTACATGGACAAGTTAGTGATATAGAGCTTCGTTCTCTAGTCGAGAATGCCATGAAACATTACTTTCAACTCTTCCGAATGAAGTCAGCCGCTGCAAAAATCGATGTTTTCTATGTCATGTCCGGAATGTGGAAAACTTCAGCAGAGCGGTTTTTCTTGTGGATAGGCGGATTTAGACCCTCAGAGCTTCTCAAGGTTCTGTTACCGCATTTTGATCCTTTGACGGATCAACAACTTTTGGATGTATGTAATCTGAGGCAATCATGTCAACAAGCAGAAGATGCGTTATCCCAAGGTATGGAGAAACTGCAACATACATTAGCAGAGAGTGTAGCAGCCGGGAAACTTGGTGAAGGAAGTTATATTCCTCAAATGACTTGTGCTATGGAGAGATTGGAGGCTTTGGTCAGCTTTGTAAATCAAGCTGATCATCTGAGACATGAGACATTGCAACAGATGCATCGGATCTTAACCACGCGACAAGCGGCTAGAGGTTTGTTAGCATTAGGGGAGTATTTCCAAAGGCTTCGAGCTTTGAGTTCGAGTTGGGCGGCTAGGCAACGTGAACCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

364

Amino Acids

41.75

Weight (kDa)

6.68

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	78 - 108	8.3e-09	bZIP transcription factor
DOG1	PF14144	166 - 241	7.1e-31	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210
fragaria_vesca	FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900
malus_domestica	MD01G1021600.v1.1 MD15G1330400.v1.1
prunus_persica	Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1
pyrus_communis	pycom01g05010
rosa_chinensis	RchiOBHm_Chr2g0115911
rosa_multiflora	Rmu_ssc0000197.1_g000009
rosa_roxburghii	Rroxscaffold_2G00127690 Rroxscaffold_2G00128520
rosa_rugosa	Rorug02G0200900 Rorug02G0201000 Rorug02G0201100 Rorug02G0201200
rosa_samantha	Rh2BG268900 Rh2CG264400 Rh2DG266100
rosa_wichuraiana	Rw2G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccBSI	CCGCTC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	110
AccII	CGCG	1 cut(s)	997
AccIII	TCCGGA	1 cut(s)	641
AciI	CCGC	6 cut(s)	609, 667, 687, 725, 1004, 1070
AclWI	GGATC	3 cut(s)	728, 753, 992
AcuI	CTGAAG	1 cut(s)	642
AfiI	CCNNNNNNNGG	2 cut(s)	648, 817
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	44, 91, 587
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	4 cut(s)	96, 314, 949, 956
AlwI	GGATC	3 cut(s)	728, 753, 992
AlwNI	CAGNNNCTG	1 cut(s)	611
Aor13HI	TCCGGA	1 cut(s)	641
ApeKI	GCWGC	4 cut(s)	272, 313, 611, 854
AspLEI	GCGC	1 cut(s)	294
AsuC2I	CCSGG	1 cut(s)	859
AsuHPI	GGTGA	1 cut(s)	881
AsuNHI	GCTAGC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	4 cut(s)	284, 325, 598, 866
BccI	CCATC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	946
BcnI	CCSGG	1 cut(s)	859
BcoDI	GTCTC	4 cut(s)	96, 314, 949, 956
BfaI	CTAG	9 cut(s)	225, 254, 276, 317, 324, 369, 557, 1008, 1074
BfuI	GTATCC	1 cut(s)	160
BisI	GCNGC	7 cut(s)	273, 314, 609, 612, 855, 1005, 1071
BlsI	GCNGC	7 cut(s)	274, 315, 610, 613, 856, 1006, 1072
Bme1390I	CCNGG	2 cut(s)	117, 859
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	117, 859
BmsI	GCATC	3 cut(s)	790, 966, 988
BmtI	GCTAGC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	695
BpuMI	CCSGG	1 cut(s)	859
Bsa29I	ATCGAT	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	811
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	2 cut(s)	648, 817
Bse118I	RCCGGY	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	965
BseAI	TCCGGA	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	811
BseGI	GGATG	2 cut(s)	229, 766
BseLI	CCNNNNNNNGG	2 cut(s)	648, 817
BseMI	GCAATG	1 cut(s)	965
BseMII	CTCAG	5 cut(s)	438, 453, 714, 764, 944
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	284, 325, 598, 866
Bsh1236I	CGCG	1 cut(s)	997
Bsh1285I	CGRYCG	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	621
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	328, 642, 858
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	648, 817
BsmAI	GTCTC	4 cut(s)	96, 314, 949, 956
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp13I	TCCGGA	1 cut(s)	641
Bsp143I	GATC	5 cut(s)	361, 733, 745, 946, 984
BspACI	CCGC	6 cut(s)	609, 667, 687, 725, 1004, 1070
BspCNI	CTCAG	5 cut(s)	437, 452, 713, 765, 945
BspDI	ATCGAT	1 cut(s)	621
BspEI	TCCGGA	1 cut(s)	641
BspFNI	CGCG	1 cut(s)	997
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	728, 753, 992
BsrBI	CCGCTC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	965
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	811
BssMI	GATC	5 cut(s)	361, 733, 745, 946, 984
BssNAI	GTATAC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	811
Bst1107I	GTATAC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	596
BstAPI	GCANNNNNTGC	2 cut(s)	800, 976
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	7 cut(s)	416, 424, 439, 509, 700, 773, 953
BstF5I	GGATG	2 cut(s)	229, 766
BstFNI	CGCG	1 cut(s)	997
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	5 cut(s)	364, 736, 748, 949, 987
BstMAI	GTCTC	4 cut(s)	96, 314, 949, 956
BstMBI	GATC	5 cut(s)	361, 733, 745, 946, 984
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 976
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	115, 857
BstUI	CGCG	1 cut(s)	997
BstV1I	GCAGC	4 cut(s)	284, 325, 598, 866
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
BstZ17I	GTATAC	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	621
BsuI	GTATCC	1 cut(s)	160
BsuTUI	ATCGAT	1 cut(s)	621
BtsCI	GGATG	2 cut(s)	229, 766
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	611
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	621
CviAII	CATG	8 cut(s)	106, 176, 433, 524, 571, 637, 783, 959
DdeI	CTNAG	7 cut(s)	416, 424, 439, 509, 700, 773, 953
DpnI	GATC	5 cut(s)	363, 735, 747, 948, 986
DpnII	GATC	5 cut(s)	361, 733, 745, 946, 984
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	596
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	596
EciI	GGCGGA	1 cut(s)	702
Ecl136II	GAGCTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	811
Eco24I	GRGCYC	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	811
EcoT22I	ATGCAT	1 cut(s)	981
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	811
FaeI	CATG	8 cut(s)	109, 179, 436, 527, 574, 640, 786, 962
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	8 cut(s)	105, 175, 432, 523, 570, 636, 782, 958
FbaI	TGATCA	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	7 cut(s)	273, 314, 609, 612, 855, 1005, 1071
FokI	GGATG	2 cut(s)	216, 773
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	7 cut(s)	273, 314, 609, 612, 855, 1005, 1071
FspBI	CTAG	9 cut(s)	225, 254, 276, 317, 324, 369, 557, 1008, 1074
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	7 cut(s)	273, 314, 609, 612, 855, 1005, 1071
HapII	CCGG	3 cut(s)	328, 642, 858
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	8 cut(s)	109, 179, 436, 527, 574, 640, 786, 962
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	3 cut(s)	328, 642, 858
HphI	GGTGA	1 cut(s)	881
Hpy166II	GTNNAC	5 cut(s)	49, 111, 506, 788, 1085
Hpy188I	TCNGA	7 cut(s)	163, 427, 596, 703, 774, 954, 984
Hpy188III	TCNNGA	7 cut(s)	91, 133, 225, 233, 266, 562, 642
Hpy8I	GTNNAC	5 cut(s)	49, 111, 506, 788, 1085
HpyAV	CCTTC	4 cut(s)	30, 179, 243, 866
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	1081, 1091
HpyCH4V	TGCA	5 cut(s)	452, 614, 829, 970, 979
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 976
HpyF3I	CTNAG	7 cut(s)	416, 424, 439, 509, 700, 773, 953
HpySE526I	ACGT	2 cut(s)	1081, 1091
Hsp92II	CATG	8 cut(s)	109, 179, 436, 527, 574, 640, 786, 962
HspAI	GCGC	1 cut(s)	292
Kpn2I	TCCGGA	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	5 cut(s)	361, 733, 745, 946, 984
Lsp1109I	GCAGC	4 cut(s)	284, 325, 598, 866
LweI	GCATC	3 cut(s)	790, 966, 988
MaeI	CTAG	9 cut(s)	225, 254, 276, 317, 324, 369, 557, 1008, 1074
MaeII	ACGT	2 cut(s)	1081, 1091
MaeIII	GTNAC	1 cut(s)	720
MalI	GATC	5 cut(s)	363, 735, 747, 948, 986
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	5 cut(s)	361, 733, 745, 946, 984
MboII	GAAGA	4 cut(s)	92, 494, 583, 809
MflI	RGATCY	1 cut(s)	984
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	1 cut(s)	339
Mph1103I	ATGCAT	1 cut(s)	981
MroI	TCCGGA	1 cut(s)	641
MseI	TTAA	2 cut(s)	332, 989
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	328, 642, 858
MspR9I	CCNGG	2 cut(s)	117, 859
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	997
MwoI	GCNNNNNNNGC	2 cut(s)	800, 976
NciI	CCSGG	1 cut(s)	859
NdeII	GATC	5 cut(s)	361, 733, 745, 946, 984
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	8 cut(s)	109, 179, 436, 527, 574, 640, 786, 962
NsbI	TGCGCA	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	981
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	7 cut(s)	274, 315, 610, 613, 856, 1006, 1072
Ple19I	CGATCG	1 cut(s)	364
PscI	ACATGT	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	984
PvuI	CGATCG	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	332, 989
SatI	GCNGC	7 cut(s)	273, 314, 609, 612, 855, 1005, 1071
Sau3AI	GATC	5 cut(s)	361, 733, 745, 946, 984
ScrFI	CCNGG	2 cut(s)	117, 859
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	3 cut(s)	790, 966, 988
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	6 cut(s)	609, 667, 687, 725, 1004, 1070
SspMI	CTAG	9 cut(s)	225, 254, 276, 317, 324, 369, 557, 1008, 1074
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	115, 857
StyI	CCWWGG	1 cut(s)	811
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	1084, 1094
TaqI	TCGA	7 cut(s)	14, 265, 360, 561, 621, 1048, 1061
TasI	AATT	1 cut(s)	339
TauI	GCSGC	3 cut(s)	611, 1007, 1073
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	2 cut(s)	332, 989
Tru9I	TTAA	2 cut(s)	332, 989
TseI	GCWGC	4 cut(s)	272, 313, 611, 854
TspDTI	ATGAA	4 cut(s)	17, 332, 587, 614
TspGWI	ACGGA	2 cut(s)	411, 758
Van91I	CCANNNNNTGG	1 cut(s)	817
XbaI	TCTAGA	1 cut(s)	224
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	9 cut(s)	225, 254, 276, 317, 324, 369, 557, 1008, 1074
Zsp2I	ATGCAT	1 cut(s)	981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.