Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002995

Physical Location & Seq

Genomic Coordinates Reverse (-)

18819790 .. 18821991

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0201200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGAAGTTCAACTTCTGCAGAGAGGCCTTAACAACTATAACTGAATCCGCCGCTGAAATCTTCAAGGTGAACCAGAGGCTTGTTAAGCTTAATCGCTCGCATTGTTACGCAGAGACACTCCAGCTTTTCACCCAAACCCATTCATCCGAGTCACTTAGACCAGACCACTACACGGTCTCGGCGGCCGTCACCGCCTGCGCGAAATTACGCGACATTTTTTTCGGGACCCAACTCCACGGCAACGCCGTCCGGTCCGGCCTCAAAGCCTACCCTCACGTGGCCAACCCGCTGCTCTCGCTTTATGCGAAAGCGGAAGATTTGAATGCTGTGAGATGGGTTTTTGATGAGATTGCAGACCCAGATGTTTATTCGTGGACGACGCTGCTGTCGGCTTGTGTTAAATTGGGGCATGTGGACTATGCATGTGAGGTGTTTGATAAAATGCCTCACAAGGGTAATGTGCCGATTTGGAATGCGATGATTACCGGGTGCGCCGAGAATGGGGATGAGGAGGTTACTTTTAGTTTGTTTTGTGAAATGCATAGGATGGGTGTTAAGCATGATAATTTTAGTGTTGCTAGTGTGTTGAGTTTGTGTTGTTTGGAGTCTCTGGGATTTGGGAGGCAGGTGCATTGTTTAGTGATTAGAACCGGGTTTTTGGGAAGAGCTTCTGTTGTGAACGCTCTGCTTACTATGTATTTTAACTGCGCAAGTGTTGCGGAGGCATTTGAGGTGTTTGAAGAAGCAGAAGATGGGGTGTATGATCAGATTACTTTTAATGTGATGATCGATGGTTTGGTGGGTGTGGGAAGAGATGAAGAGGCTTTGACAATGTTCAAAGGGATGCAAGAGGCGTGTCTTAGGCCTACTGAGCTGACTTTTGTGAGTGTCATGAGCTCATGTTCAGCTGCAAGAGTTGCTAACCATGTACATGCGCAGGCGATTAAGTTGGGTTTTGAAGCTTTCACTGCTGTGGGCAATGCAGCAATTACCATGTTTTCTGGTTGTGGGGATTGGCAAGCGGCTTACCTGGTTTTTCAGACATTGGAAGAGAAGGATCTTATATCATGGAATGCCATGATCTCGACTTATGCTCAAGTGAATGACAGTGAATCAGCCGTTTTGGTTTATCTGCAAATGCAGAGGGAAGGAGAGAAACCAGATGAGTTTGCTTATGGAAGTTTGTTGGCAAGCTCTGAGTATATTGAGACCGTGCAAATGATTCAGGCTGTTGCACACAAAAATGGGCTTATCCTTAAAATCCAAGTTTCAAATGCAATGGTTTCTGCATATGCTAGGCAGGGTCAGATGAATCTAGCCTATCAGACATTCCAAGATATCAAATACAAAAATTTGATCACCTGGAATGCTATTATTTCTGGATTCCTGTTGAACGGAATGGTAAATGAAGGGTTAGAGCAATTTCATGAGCTGCTTGTGTCAGAACTCAGTCCAGATGTGTATACCCTGAGTATAATTGTAAGCATGTGTGCAAGCATAACATCCTTGAGAGATGGAAAACCAGTTCATGCCTACATTCTCAAATTTGGGTTTTCTCAACAACTGTGCTTAGGTAATGCCCTCATTACGATGTATGCTAAATGCGGGGTTTTAGATTGGTCGGTAAGAGTGTTTGAAGCAATGAATGAAAAGGATATAGTCTCCTGGAATGCCCTGATATCAGCTTATGCACAACATGGGAAAGGAAAGGAAGCTGTTGATTGTTTTGAGGCGATGCAAGACTTGTCTTCCATCACACCAGAGCAGGCGACCTTCACTGCAGTTCTTTCCGCTTGCAGTCATGCCGGTTTAGTTGATGATGGTACACGAATTTTCAATTCCATGATTAGTAATTACGGCTTTATGCCAGAAGTAGATCATTTTTCTTGTATAGTTGACCTTCTAGGTCGTGCCGGGTACCTTGATGAGGCGGAAACAGTGATAAACAGCAAGGAAATTGAAGCACATCCAAATATTTGGTGGACACTAATTAGTTCCTGTGCAGCACATGGTAATTTAAGACTAGGAAGAATAGTTGCTGGATATCTCCTTGAAACTGAACAAAATAATCCATCAGTTTATGTGCTTTTGGCAAGTATATACGCAGCCGCTGGTCAATGGGAAGAAGCAGCTAATGTGAGAGAATTAATGAACGCAACTGGGAAGGCGAAGACACCTGGATGCAGTTGGATTAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

733

Amino Acids

80.84

Weight (kDa)

5.07

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	120 - 155	3e-06	PPR repeat family
PPR	PF01535	123 - 152	5e-06	PPR repeat
PPR_2	PF13041	153 - 200	3.1e-07	PPR repeat family
PPR_2	PF13041	255 - 301	7.9e-06	PPR repeat family
PPR_2	PF13041	353 - 396	9.6e-08	PPR repeat family
PPR_2	PF13041	451 - 498	2.7e-08	PPR repeat family
PPR_2	PF13041	551 - 600	4.3e-10	PPR repeat family
PPR	PF01535	554 - 581	1.4e-07	PPR repeat
E_motif	PF20431	670 - 732	1.1e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210
fragaria_vesca	FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900
malus_domestica	MD01G1021600.v1.1 MD15G1330400.v1.1
prunus_persica	Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1
pyrus_communis	pycom01g05010
rosa_chinensis	RchiOBHm_Chr2g0115911
rosa_multiflora	Rmu_ssc0000197.1_g000009
rosa_roxburghii	Rroxscaffold_2G00127690 Rroxscaffold_2G00128520
rosa_rugosa	Rorug02G0200900 Rorug02G0201000 Rorug02G0201100 Rorug02G0201200
rosa_samantha	Rh2BG268900 Rh2CG264400 Rh2DG266100
rosa_wichuraiana	Rw2G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	616
AasI	GACNNNNNNGTC	1 cut(s)	385
Acc16I	TGCGCA	2 cut(s)	709, 936
Acc36I	ACCTGC	1 cut(s)	616
Acc65I	GGTACC	1 cut(s)	1917
AccB1I	GGYRCC	1 cut(s)	1917
AccI	GTMKAC	1 cut(s)	1463
AccII	CGCG	2 cut(s)	200, 210
AclWI	GGATC	1 cut(s)	1065
AcoI	YGGCCR	2 cut(s)	183, 279
AcsI	RAATTY	3 cut(s)	1351, 1544, 1830
AcvI	CACGTG	1 cut(s)	277
AfaI	GTAC	3 cut(s)	930, 1825, 1919
AfiI	CCNNNNNNNGG	5 cut(s)	172, 277, 452, 501, 1927
AjnI	CCWGG	4 cut(s)	1029, 1361, 1664, 2176
AleI	CACNNNNGTG	1 cut(s)	971
AloI	GAACNNNNNNTCC	2 cut(s)	1509, 1541
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	5 cut(s)	107, 181, 612, 1202, 1666
AlwI	GGATC	1 cut(s)	1065
AlwNI	CAGNNNCTG	1 cut(s)	2111
AoxI	GGCC	5 cut(s)	24, 183, 256, 279, 863
ApeKI	GCWGC	8 cut(s)	289, 382, 908, 983, 1432, 2003, 2105, 2129
ApoI	RAATTY	3 cut(s)	1351, 1544, 1830
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AseI	ATTAAT	2 cut(s)	2147, 2193
Asp700I	GAANNNNTTC	1 cut(s)	667
Asp718I	GGTACC	1 cut(s)	1917
AspLEI	GCGC	4 cut(s)	200, 494, 710, 937
AspS9I	GGNCC	2 cut(s)	225, 252
AsuC2I	CCSGG	3 cut(s)	487, 652, 1915
AsuHPI	GGTGA	4 cut(s)	79, 121, 181, 1351
AvaII	GGWCC	2 cut(s)	225, 252
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	1917
BanII	GRGCYC	1 cut(s)	899
BbrPI	CACGTG	1 cut(s)	277
BbsI	GAAGAC	2 cut(s)	1740, 2177
Bbv12I	GWGCWC	1 cut(s)	899
BbvI	GCAGC	8 cut(s)	276, 369, 895, 995, 1419, 2015, 2117, 2141
BccI	CCATC	8 cut(s)	327, 541, 746, 785, 1508, 1760, 1814, 2080
BceAI	ACGGC	5 cut(s)	170, 230, 253, 1103, 1873
BciT130I	CCWGG	4 cut(s)	1031, 1363, 1666, 2178
BclI	TGATCA	2 cut(s)	763, 1356
BcnI	CCSGG	3 cut(s)	487, 652, 1915
BcoDI	GTCTC	5 cut(s)	107, 181, 612, 1202, 1666
BfaI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
BfmI	CTRYAG	2 cut(s)	16, 1779
BfuAI	ACCTGC	1 cut(s)	616
Bme1390I	CCNGG	7 cut(s)	487, 652, 1031, 1363, 1666, 1915, 2178
Bme18I	GGWCC	2 cut(s)	225, 252
BmgT120I	GGNCC	2 cut(s)	225, 252
BmiI	GGNNCC	3 cut(s)	226, 227, 1919
BmrFI	CCNGG	7 cut(s)	487, 652, 1031, 1363, 1666, 1915, 2178
BmrI	ACTGGG	1 cut(s)	2169
BmsI	GCATC	3 cut(s)	834, 1725, 2171
BmuI	ACTGGG	1 cut(s)	2169
BpiI	GAAGAC	2 cut(s)	1740, 2177
BpmI	CTGGAG	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	1570
BpuEI	CTTGAG	2 cut(s)	1080, 1528
BpuMI	CCSGG	3 cut(s)	487, 652, 1915
Bsa29I	ATCGAT	1 cut(s)	789
BsaAI	YACGTR	1 cut(s)	277
BsaI	GGTCTC	2 cut(s)	181, 1202
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 277, 452, 501, 1927
Bse118I	RCCGGY	1 cut(s)	1805
Bse1I	ACTGG	2 cut(s)	1523, 2164
Bse3DI	GCAATG	3 cut(s)	985, 1284, 1647
BseBI	CCWGG	4 cut(s)	1031, 1363, 1666, 2178
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	7 cut(s)	143, 511, 552, 849, 1502, 1966, 2186
BseLI	CCNNNNNNNGG	5 cut(s)	172, 277, 452, 501, 1927
BseMI	GCAATG	3 cut(s)	985, 1284, 1647
BseMII	CTCAG	4 cut(s)	861, 1188, 1460, 1462
BseNI	ACTGG	2 cut(s)	1523, 2164
BseRI	GAGGAG	1 cut(s)	524
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	8 cut(s)	276, 369, 895, 995, 1419, 2015, 2117, 2141
BsgI	GTGCAG	1 cut(s)	2022
Bsh1236I	CGCG	2 cut(s)	200, 210
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	5 cut(s)	26, 185, 258, 281, 865
BshNI	GGYRCC	1 cut(s)	1917
BshVI	ATCGAT	1 cut(s)	789
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	6 cut(s)	250, 255, 486, 651, 1806, 1914
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	5 cut(s)	172, 277, 452, 501, 1927
BsmAI	GTCTC	5 cut(s)	107, 181, 612, 1202, 1666
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	5 cut(s)	328, 478, 1078, 1372, 1675
BsnI	GGCC	5 cut(s)	26, 185, 258, 281, 865
Bso31I	GGTCTC	2 cut(s)	181, 1202
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp1407I	TGTACA	1 cut(s)	928
Bsp143I	GATC	6 cut(s)	763, 786, 1057, 1080, 1356, 1876
BspANI	GGCC	5 cut(s)	26, 185, 258, 281, 865
BspCNI	CTCAG	4 cut(s)	862, 1189, 1461, 1461
BspDI	ATCGAT	1 cut(s)	789
BspFNI	CGCG	2 cut(s)	200, 210
BspHI	TCATGA	2 cut(s)	891, 1426
BspLI	GGNNCC	3 cut(s)	226, 227, 1919
BspMAI	CTGCAG	2 cut(s)	20, 1783
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	1065
BspQI	GCTCTTC	1 cut(s)	658
BspT107I	GGYRCC	1 cut(s)	1917
BspTNI	GGTCTC	2 cut(s)	181, 1202
BsrDI	GCAATG	3 cut(s)	985, 1284, 1647
BsrFI	RCCGGY	1 cut(s)	1805
BsrGI	TGTACA	1 cut(s)	928
BsrI	ACTGG	2 cut(s)	1523, 2164
BssAI	RCCGGY	1 cut(s)	1805
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	6 cut(s)	763, 786, 1057, 1080, 1356, 1876
BssNAI	GTATAC	1 cut(s)	1464
Bst1107I	GTATAC	1 cut(s)	1464
Bst2UI	CCWGG	4 cut(s)	1031, 1363, 1666, 2178
Bst4CI	ACNGT	5 cut(s)	175, 1109, 1213, 1566, 1939
Bst6I	CTCTTC	4 cut(s)	658, 805, 813, 1044
BstAPI	GCANNNNNTGC	2 cut(s)	716, 917
BstAUI	TGTACA	1 cut(s)	928
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	8 cut(s)	98, 196, 939, 1020, 1192, 1495, 1767, 1795
BstDEI	CTNAG	7 cut(s)	155, 860, 870, 1197, 1448, 1469, 1570
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	1925
BstF5I	GGATG	7 cut(s)	143, 511, 552, 849, 1502, 1966, 2186
BstFNI	CGCG	2 cut(s)	200, 210
BstHHI	GCGC	4 cut(s)	200, 494, 710, 937
BstKTI	GATC	6 cut(s)	766, 789, 1060, 1083, 1359, 1879
BstMAI	GTCTC	5 cut(s)	107, 181, 612, 1202, 1666
BstMBI	GATC	6 cut(s)	763, 786, 1057, 1080, 1356, 1876
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	7 cut(s)	85, 191, 295, 716, 871, 917, 968
BstNI	CCWGG	4 cut(s)	1031, 1363, 1666, 2178
BstNSI	RCATGY	4 cut(s)	413, 426, 935, 1489
BstSCI	CCNGG	7 cut(s)	485, 650, 1029, 1361, 1664, 1913, 2176
BstSFI	CTRYAG	2 cut(s)	16, 1779
BstUI	CGCG	2 cut(s)	200, 210
BstV1I	GCAGC	8 cut(s)	276, 369, 895, 995, 1419, 2015, 2117, 2141
BstV2I	GAAGAC	2 cut(s)	1740, 2177
BstX2I	RGATCY	1 cut(s)	1057
BstXI	CCANNNNNNTGG	1 cut(s)	1977
BstYI	RGATCY	1 cut(s)	1057
BstZ17I	GTATAC	1 cut(s)	1464
BstZI	CGGCCG	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	789
BsuRI	GGCC	5 cut(s)	26, 185, 258, 281, 865
BsuTUI	ATCGAT	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	2 cut(s)	491, 1748
BtsCI	GGATG	7 cut(s)	143, 511, 552, 849, 1502, 1966, 2186
BtsI	GCAGTG	2 cut(s)	966, 1776
BtsIMutI	CAGTG	4 cut(s)	966, 1114, 1776, 1944
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	8 cut(s)	98, 196, 939, 1020, 1192, 1495, 1767, 1795
CaiI	CAGNNNCTG	1 cut(s)	2111
CciI	TCATGA	2 cut(s)	891, 1426
CfoI	GCGC	4 cut(s)	200, 494, 710, 937
Cfr10I	RCCGGY	1 cut(s)	1805
Cfr13I	GGNCC	2 cut(s)	225, 252
ClaI	ATCGAT	1 cut(s)	789
CpoI	CGGWCCG	1 cut(s)	252
CseI	GACGC	1 cut(s)	388
CsiI	ACCWGGT	1 cut(s)	1029
Csp6I	GTAC	3 cut(s)	929, 1824, 1918
CspI	CGGWCCG	1 cut(s)	252
CviQI	GTAC	3 cut(s)	929, 1824, 1918
DdeI	CTNAG	7 cut(s)	155, 860, 870, 1197, 1448, 1469, 1570
DpnI	GATC	6 cut(s)	765, 788, 1059, 1082, 1358, 1878
DpnII	GATC	6 cut(s)	763, 786, 1057, 1080, 1356, 1876
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	2 cut(s)	183, 279
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	4 cut(s)	658, 805, 813, 1044
EarI	CTCTTC	4 cut(s)	658, 805, 813, 1044
EciI	GGCGGA	2 cut(s)	37, 1946
Ecl136II	GAGCTC	1 cut(s)	897
EclXI	CGGCCG	1 cut(s)	183
Eco147I	AGGCCT	2 cut(s)	26, 865
Eco24I	GRGCYC	1 cut(s)	899
Eco31I	GGTCTC	2 cut(s)	181, 1202
Eco32I	GATATC	3 cut(s)	1339, 1680, 2045
Eco47I	GGWCC	2 cut(s)	225, 252
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	897
Eco72I	CACGTG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	897
EcoNI	CCTNNNNNAGG	1 cut(s)	1925
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	4 cut(s)	1029, 1361, 1664, 2176
EcoRV	GATATC	3 cut(s)	1339, 1680, 2045
EcoT22I	ATGCAT	2 cut(s)	424, 543
EcoT38I	GRGCYC	1 cut(s)	899
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	238
FauI	CCCGC	2 cut(s)	294, 1598
FauNDI	CATATG	1 cut(s)	1291
FbaI	TGATCA	2 cut(s)	763, 1356
FblI	GTMKAC	1 cut(s)	1463
FokI	GGATG	7 cut(s)	130, 518, 559, 856, 1489, 1953, 2193
FriOI	GRGCYC	1 cut(s)	899
FspBI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
FspI	TGCGCA	2 cut(s)	709, 936
GlaI	GCGC	4 cut(s)	199, 493, 709, 936
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	5 cut(s)	26, 185, 258, 281, 865
HapII	CCGG	6 cut(s)	250, 255, 486, 651, 1806, 1914
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	4 cut(s)	200, 494, 710, 937
Hin6I	GCGC	4 cut(s)	198, 492, 708, 935
HinP1I	GCGC	4 cut(s)	198, 492, 708, 935
HincII	GTYRAC	1 cut(s)	1897
HindII	GTYRAC	1 cut(s)	1897
HindIII	AAGCTT	2 cut(s)	86, 960
HinfI	GANTC	7 cut(s)	44, 149, 605, 1112, 1222, 1312, 1383
HpaII	CCGG	6 cut(s)	250, 255, 486, 651, 1806, 1914
HphI	GGTGA	4 cut(s)	79, 121, 181, 1351
Hpy166II	GTNNAC	8 cut(s)	70, 375, 415, 679, 1464, 1826, 1897, 1983
Hpy188I	TCNGA	7 cut(s)	148, 768, 1041, 1198, 1308, 1326, 1444
Hpy188III	TCNNGA	6 cut(s)	223, 892, 1084, 1380, 1427, 1454
Hpy8I	GTNNAC	8 cut(s)	70, 375, 415, 679, 1464, 1826, 1897, 1983
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	6 cut(s)	1048, 1142, 1403, 1783, 1910, 2158
HpyCH4III	ACNGT	5 cut(s)	175, 1109, 1213, 1566, 1939
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	7 cut(s)	85, 191, 295, 716, 871, 917, 968
HpyF3I	CTNAG	7 cut(s)	155, 860, 870, 1197, 1448, 1469, 1570
HpySE526I	ACGT	1 cut(s)	276
HspAI	GCGC	4 cut(s)	198, 492, 708, 935
KflI	GGGWCCC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	1921
Ksp22I	TGATCA	2 cut(s)	763, 1356
Kzo9I	GATC	6 cut(s)	763, 786, 1057, 1080, 1356, 1876
LguI	GCTCTTC	1 cut(s)	658
Lsp1109I	GCAGC	8 cut(s)	276, 369, 895, 995, 1419, 2015, 2117, 2141
LweI	GCATC	3 cut(s)	834, 1725, 2171
MabI	ACCWGGT	1 cut(s)	1029
MaeI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	4 cut(s)	104, 150, 187, 514
MalI	GATC	6 cut(s)	765, 788, 1059, 1082, 1358, 1878
MboI	GATC	6 cut(s)	763, 786, 1057, 1080, 1356, 1876
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	1 cut(s)	899
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	158, 614
MmeI	TCCRAC	1 cut(s)	2168
Mox20I	TGGCCA	1 cut(s)	281
Mph1103I	ATGCAT	2 cut(s)	424, 543
MroXI	GAANNNNTTC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	281
MslI	CAYNNNNRTG	5 cut(s)	930, 971, 1242, 1589, 2179
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	4 cut(s)	53, 289, 908, 2111
MspI	CCGG	6 cut(s)	250, 255, 486, 651, 1806, 1914
MspR9I	CCNGG	7 cut(s)	487, 652, 1031, 1363, 1666, 1915, 2178
Mva1269I	GAATGC	5 cut(s)	328, 478, 1078, 1372, 1675
MvaI	CCWGG	4 cut(s)	1031, 1363, 1666, 2178
MvnI	CGCG	2 cut(s)	200, 210
MwoI	GCNNNNNNNGC	7 cut(s)	85, 191, 295, 716, 871, 917, 968
NciI	CCSGG	3 cut(s)	487, 652, 1915
NdeI	CATATG	1 cut(s)	1291
NdeII	GATC	6 cut(s)	763, 786, 1057, 1080, 1356, 1876
NlaIV	GGNNCC	3 cut(s)	226, 227, 1919
NmeAIII	GCCGAG	2 cut(s)	158, 520
NmuCI	GTSAC	2 cut(s)	150, 187
NsbI	TGCGCA	2 cut(s)	709, 936
NsiI	ATGCAT	2 cut(s)	424, 543
NspI	RCATGY	4 cut(s)	413, 426, 935, 1489
OliI	CACNNNNGTG	1 cut(s)	971
PagI	TCATGA	2 cut(s)	891, 1426
PaqCI	CACCTGC	1 cut(s)	616
PceI	AGGCCT	2 cut(s)	26, 865
PciSI	GCTCTTC	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 302
PctI	GAATGC	5 cut(s)	328, 478, 1078, 1372, 1675
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	5 cut(s)	44, 1112, 1222, 1312, 1383
PfoI	TCCNGGA	1 cut(s)	1664
PleI	GAGTC	2 cut(s)	157, 613
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	2 cut(s)	157, 613
Ppu21I	YACGTR	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	225
PshBI	ATTAAT	2 cut(s)	2147, 2193
Psp124BI	GAGCTC	1 cut(s)	899
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	4 cut(s)	1029, 1361, 1664, 2176
PspCI	CACGTG	1 cut(s)	277
PspGI	CCWGG	4 cut(s)	1029, 1361, 1664, 2176
PspN4I	GGNNCC	3 cut(s)	226, 227, 1919
PspPI	GGNCC	2 cut(s)	225, 252
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	2 cut(s)	20, 1783
PstNI	CAGNNNCTG	1 cut(s)	2111
PsuI	RGATCY	1 cut(s)	1057
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	3 cut(s)	930, 1825, 1919
RsaNI	GTAC	3 cut(s)	929, 1824, 1918
RseI	CAYNNNNRTG	5 cut(s)	930, 971, 1242, 1589, 2179
Rsr2I	CGGWCCG	1 cut(s)	252
RsrII	CGGWCCG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	899
SapI	GCTCTTC	1 cut(s)	658
Sau3AI	GATC	6 cut(s)	763, 786, 1057, 1080, 1356, 1876
Sau96I	GGNCC	2 cut(s)	225, 252
SchI	GAGTC	2 cut(s)	158, 614
ScrFI	CCNGG	7 cut(s)	487, 652, 1031, 1363, 1666, 1915, 2178
SduI	GDGCHC	1 cut(s)	899
SexAI	ACCWGGT	1 cut(s)	1029
SfaNI	GCATC	3 cut(s)	834, 1725, 2171
SfcI	CTRYAG	2 cut(s)	16, 1779
SinI	GGWCC	2 cut(s)	225, 252
SmiMI	CAYNNNNRTG	5 cut(s)	930, 971, 1242, 1589, 2179
SmlI	CTYRAG	2 cut(s)	1095, 1507
SmoI	CTYRAG	2 cut(s)	1095, 1507
SseBI	AGGCCT	2 cut(s)	26, 865
SspI	AATATT	1 cut(s)	1975
SspMI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
SstI	GAGCTC	1 cut(s)	899
StuI	AGGCCT	2 cut(s)	26, 865
StyD4I	CCNGG	7 cut(s)	485, 650, 1029, 1361, 1664, 1913, 2176
TaaI	ACNGT	5 cut(s)	175, 1109, 1213, 1566, 1939
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	789, 1085
TatI	WGTACW	1 cut(s)	928
TauI	GCSGC	4 cut(s)	53, 185, 1025, 2111
TfiI	GAWTC	5 cut(s)	44, 1112, 1222, 1312, 1383
TscAI	CASTG	4 cut(s)	973, 1114, 1783, 1944
TseFI	GTSAC	2 cut(s)	150, 187
TseI	GCWGC	8 cut(s)	289, 382, 908, 983, 1432, 2003, 2105, 2129
Tsp45I	GTSAC	2 cut(s)	150, 187
TspGWI	ACGGA	1 cut(s)	1410
TspRI	CASTG	4 cut(s)	973, 1114, 1783, 1944
VpaK11BI	GGWCC	2 cut(s)	225, 252
VspI	ATTAAT	2 cut(s)	2147, 2193
XagI	CCTNNNNNAGG	1 cut(s)	1925
XapI	RAATTY	3 cut(s)	1351, 1544, 1830
XceI	RCATGY	4 cut(s)	413, 426, 935, 1489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1977
XmiI	GTMKAC	1 cut(s)	1463
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
Zsp2I	ATGCAT	2 cut(s)	424, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.