Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002995

Physical Location & Seq

Genomic Coordinates Reverse (-)

8527055 .. 8530769

Gene Structure 3715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1021600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGAGTGTATGAGCCTATCCACCAAATTAGCATGTGGGATGAAAGCTTTAGGAGTAGTGGCAATTTTAATGCCTCGGCATCCATGATACTGGATGAAGACATTAAACTACATAACCAGTCAGAGGACACTTCCCATGGAATTCTGGGACCTTCTAGCAAGTATGACCAAGAAACAACTAAACCTACGGACAAGGTACAAAGACGTCTTGCACAAAATCGGGAGGCTGCTCGTAAAAGTCGGATGCGAAAGAAGGCCTATGTTCAGCAGTTAGAAACAAGTCGTTTGAAGCTTGTTCAATTAGAGCAAGAACTTGACCGAGCAAGACAACAGCAGGGCGTGTATATTGGCGGTGGACTGGATAGTAATCCTCTTGGATTTTCTGGCACCATAAACTCAGGCGTAACAACATTTGAGATGGAGTATGGACAATGGATGGAAGAACAAAACAGGCAAATTTGTGAACTGAGGACTGCTTTGCACGCTTGTATAAGTGATGTGGAGCTTCGATTCCTTGTGGATAGTGGCATGAATCACTATTTTGAGCTTTTCAGCATGAAATCAACTGCTGCGAAAGCCGACGTTTTCTATGTGGTGTCTGGGGTGTGGGAAACATCAGCTGAACGGTTTTTCTCATGGATTGGAGGGTTTCGCCCTTCAGAGATTCTTAAGGTTCTTCAGCCTCACCTTGACCCGTTGACAGACCAACAAGCTTTGGATGTTCACAACCTTAGACAATCATGTCAACAAGCAGAAGATGCTCTTTCGCAAGGTATGGATAAACTCCAGCACACTCTGGCCGAGACTGTGGCAGCTGGTCAACTGGGCGAAGGCAGTTATGTCCCGCAGATGGCCAATGCCATGGAGAGATTGGAAGCTCTCGTGAGCTTTGTGACCCAGGCTGATCATATTCGGCGGGAGACCTTACAGCAGATGTCGCGCATCCTCACAACCCGCCAGGCTGCTCGAGGCCTTCTTGCCTTGGGAGAGTACTTCCAACGCCTTCGGGCCTTGAGCTCGCTCTGGGCTACTCGTCCTCATGAGCCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

351

Amino Acids

39.61

Weight (kDa)

5.85

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	63 - 103	4.8e-08	bZIP transcription factor
DOG1	PF14144	152 - 227	3.3e-28	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210
fragaria_vesca	FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900
malus_domestica	MD01G1021600.v1.1 MD15G1330400.v1.1
prunus_persica	Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1
pyrus_communis	pycom01g05010
rosa_chinensis	RchiOBHm_Chr2g0115911
rosa_multiflora	Rmu_ssc0000197.1_g000009
rosa_roxburghii	Rroxscaffold_2G00127690 Rroxscaffold_2G00128520
rosa_rugosa	Rorug02G0200900 Rorug02G0201000 Rorug02G0201100 Rorug02G0201200
rosa_samantha	Rh2BG268900 Rh2CG264400 Rh2DG266100
rosa_wichuraiana	Rw2G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	741
AatII	GACGTC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	386
AccII	CGCG	1 cut(s)	940
AciI	CCGC	4 cut(s)	351, 845, 916, 955
AcoI	YGGCCR	2 cut(s)	798, 852
AcsI	RAATTY	2 cut(s)	141, 456
AcuI	CTGAAG	2 cut(s)	642, 662
AcyI	GRCGYC	1 cut(s)	205
AfaI	GTAC	2 cut(s)	198, 992
AfiI	CCNNNNNNNGG	2 cut(s)	124, 850
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	2 cut(s)	289, 299
AjnI	CCWGG	2 cut(s)	897, 957
Alw21I	GWGCWC	1 cut(s)	1019
Alw26I	GTCTC	2 cut(s)	797, 914
Ama87I	CYCGRG	1 cut(s)	966
AoxI	GGCC	5 cut(s)	255, 798, 852, 970, 1008
ApeKI	GCWGC	4 cut(s)	227, 569, 812, 962
ApoI	RAATTY	2 cut(s)	141, 456
AspLEI	GCGC	1 cut(s)	942
AspS9I	GGNCC	2 cut(s)	149, 1008
AsuHPI	GGTGA	1 cut(s)	677
AvaI	CYCGRG	1 cut(s)	966
AvaII	GGWCC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	854
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	1019
BauI	CACGAG	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	1019
BbvI	GCAGC	4 cut(s)	214, 556, 824, 949
BccI	CCATC	3 cut(s)	412, 430, 844
BciT130I	CCWGG	2 cut(s)	899, 959
BclI	TGATCA	1 cut(s)	904
BcoDI	GTCTC	2 cut(s)	797, 914
BfaI	CTAG	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	668
BisI	GCNGC	4 cut(s)	228, 570, 813, 963
BlsI	GCNGC	4 cut(s)	229, 571, 814, 964
BmcAI	AGTACT	1 cut(s)	992
Bme1390I	CCNGG	2 cut(s)	899, 959
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	966
BmgT120I	GGNCC	2 cut(s)	149, 1008
BmiI	GGNNCC	2 cut(s)	150, 388
BmrFI	CCNGG	2 cut(s)	899, 959
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	4 cut(s)	89, 234, 748, 951
BmuI	ACTGGG	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	1033
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	914
BsaJI	CCNNGG	5 cut(s)	75, 136, 861, 897, 981
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 850
Bse1I	ACTGG	4 cut(s)	96, 118, 363, 828
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	899, 959
BseDI	CCNNGG	5 cut(s)	75, 136, 861, 897, 981
BseGI	GGATG	7 cut(s)	46, 80, 100, 249, 441, 724, 942
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	124, 850
BseMII	CTCAG	2 cut(s)	411, 458
BseNI	ACTGG	4 cut(s)	96, 118, 363, 828
BseXI	GCAGC	4 cut(s)	214, 556, 824, 949
Bsh1236I	CGCG	1 cut(s)	940
BshFI	GGCC	5 cut(s)	257, 800, 854, 972, 1010
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiHKCI	CYCGRG	1 cut(s)	966
BslFI	GGGAC	2 cut(s)	162, 827
BslI	CCNNNNNNNGG	2 cut(s)	124, 850
BsmAI	GTCTC	2 cut(s)	797, 914
BsmFI	GGGAC	2 cut(s)	162, 827
BsnI	GGCC	5 cut(s)	257, 800, 854, 972, 1010
Bso31I	GGTCTC	1 cut(s)	914
BsoBI	CYCGRG	1 cut(s)	966
Bsp1286I	GDGCHC	1 cut(s)	1019
Bsp143I	GATC	1 cut(s)	904
Bsp19I	CCATGG	2 cut(s)	136, 861
BspACI	CCGC	4 cut(s)	351, 845, 916, 955
BspANI	GGCC	5 cut(s)	257, 800, 854, 972, 1010
BspCNI	CTCAG	2 cut(s)	410, 459
BspFNI	CGCG	1 cut(s)	940
BspHI	TCATGA	1 cut(s)	1039
BspLI	GGNNCC	2 cut(s)	150, 388
BspT107I	GGYRCC	1 cut(s)	386
BspTI	CTTAAG	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	914
BsrI	ACTGG	4 cut(s)	96, 118, 363, 828
BssECI	CCNNGG	5 cut(s)	75, 136, 861, 897, 981
BssMI	GATC	1 cut(s)	904
BssNI	GRCGYC	1 cut(s)	205
BssSI	CACGAG	1 cut(s)	881
BssT1I	CCWWGG	3 cut(s)	136, 861, 981
Bst2BI	CACGAG	1 cut(s)	881
Bst2UI	CCWGG	2 cut(s)	899, 959
Bst4CI	ACNGT	2 cut(s)	627, 808
BstACI	GRCGYC	1 cut(s)	205
BstAFI	CTTAAG	1 cut(s)	668
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	483, 1019, 1047
BstDEI	CTNAG	3 cut(s)	397, 467, 731
BstDSI	CCRYGG	2 cut(s)	136, 861
BstF5I	GGATG	7 cut(s)	46, 80, 100, 249, 441, 724, 942
BstFNI	CGCG	1 cut(s)	940
BstHHI	GCGC	1 cut(s)	942
BstKTI	GATC	1 cut(s)	907
BstMAI	GTCTC	2 cut(s)	797, 914
BstMBI	GATC	1 cut(s)	904
BstMWI	GCNNNNNNNGC	4 cut(s)	482, 575, 758, 937
BstNI	CCWGG	2 cut(s)	899, 959
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	897, 957
BstUI	CGCG	1 cut(s)	940
BstV1I	GCAGC	4 cut(s)	214, 556, 824, 949
BstV2I	GAAGAC	1 cut(s)	105
BstXI	CCANNNNNNTGG	2 cut(s)	91, 862
BsuRI	GGCC	5 cut(s)	257, 800, 854, 972, 1010
BtgI	CCRYGG	2 cut(s)	136, 861
BtsCI	GGATG	7 cut(s)	46, 80, 100, 249, 441, 724, 942
Cac8I	GCNNGC	3 cut(s)	483, 1019, 1047
CciI	TCATGA	1 cut(s)	1039
CfoI	GCGC	1 cut(s)	942
Cfr13I	GGNCC	2 cut(s)	149, 1008
Csp6I	GTAC	2 cut(s)	197, 991
CviAII	CATG	9 cut(s)	34, 85, 137, 529, 556, 636, 741, 862, 1040
CviQI	GTAC	2 cut(s)	197, 991
DdeI	CTNAG	3 cut(s)	397, 467, 731
DpnI	GATC	1 cut(s)	906
DpnII	GATC	1 cut(s)	904
DrdI	GACNNNNNNGTC	1 cut(s)	741
DseDI	GACNNNNNNGTC	1 cut(s)	741
EaeI	YGGCCR	2 cut(s)	798, 852
Ecl136II	GAGCTC	1 cut(s)	1017
Eco130I	CCWWGG	3 cut(s)	136, 861, 981
Eco147I	AGGCCT	2 cut(s)	257, 972
Eco24I	GRGCYC	1 cut(s)	1019
Eco31I	GGTCTC	1 cut(s)	914
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	1017
Eco57I	CTGAAG	2 cut(s)	642, 662
Eco88I	CYCGRG	1 cut(s)	966
EcoICRI	GAGCTC	1 cut(s)	1017
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	897, 957
EcoT14I	CCWWGG	3 cut(s)	136, 861, 981
EcoT38I	GRGCYC	1 cut(s)	1019
ErhI	CCWWGG	3 cut(s)	136, 861, 981
FaeI	CATG	9 cut(s)	37, 88, 140, 532, 559, 639, 744, 865, 1043
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	2 cut(s)	162, 827
FatI	CATG	9 cut(s)	33, 84, 136, 528, 555, 635, 740, 861, 1039
FauI	CCCGC	3 cut(s)	852, 909, 962
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	4 cut(s)	228, 570, 813, 963
FokI	GGATG	7 cut(s)	53, 67, 107, 256, 448, 731, 929
FriOI	GRGCYC	1 cut(s)	1019
Fsp4HI	GCNGC	4 cut(s)	228, 570, 813, 963
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	941
GluI	GCNGC	4 cut(s)	228, 570, 813, 963
GsuI	CTGGAG	1 cut(s)	770
HaeIII	GGCC	5 cut(s)	257, 800, 854, 972, 1010
HhaI	GCGC	1 cut(s)	942
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	9 cut(s)	37, 88, 140, 532, 559, 639, 744, 865, 1043
Hin6I	GCGC	1 cut(s)	940
HinP1I	GCGC	1 cut(s)	940
HincII	GTYRAC	3 cut(s)	699, 746, 821
HindII	GTYRAC	3 cut(s)	699, 746, 821
HindIII	AAGCTT	3 cut(s)	46, 290, 711
HinfI	GANTC	3 cut(s)	510, 532, 664
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	6 cut(s)	356, 464, 699, 724, 746, 821
Hpy188I	TCNGA	3 cut(s)	124, 243, 661
Hpy188III	TCNNGA	3 cut(s)	221, 883, 1040
Hpy8I	GTNNAC	6 cut(s)	356, 464, 699, 724, 746, 821
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	6 cut(s)	162, 247, 666, 824, 983, 1013
HpyCH4III	ACNGT	2 cut(s)	627, 808
HpyCH4IV	ACGT	2 cut(s)	205, 582
HpyCH4V	TGCA	2 cut(s)	212, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	482, 575, 758, 937
HpyF3I	CTNAG	3 cut(s)	397, 467, 731
HpySE526I	ACGT	2 cut(s)	205, 582
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	9 cut(s)	37, 88, 140, 532, 559, 639, 744, 865, 1043
HspAI	GCGC	1 cut(s)	940
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	1 cut(s)	904
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	4 cut(s)	214, 556, 824, 949
LweI	GCATC	4 cut(s)	89, 234, 748, 951
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	205, 582
MaeIII	GTNAC	2 cut(s)	403, 892
MalI	GATC	1 cut(s)	906
MboI	GATC	1 cut(s)	904
MboII	GAAGA	4 cut(s)	110, 452, 668, 767
MhlI	GDGCHC	1 cut(s)	1019
MlsI	TGGCCA	1 cut(s)	854
MluCI	AATT	5 cut(s)	27, 64, 141, 299, 456
MluNI	TGGCCA	1 cut(s)	854
MmeI	TCCRAC	2 cut(s)	221, 1021
Mox20I	TGGCCA	1 cut(s)	854
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	3 cut(s)	69, 105, 669
Msp20I	TGGCCA	1 cut(s)	854
MspA1I	CMGCKG	2 cut(s)	620, 815
MspCI	CTTAAG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	899, 959
MvaI	CCWGG	2 cut(s)	899, 959
MvnI	CGCG	1 cut(s)	940
MwoI	GCNNNNNNNGC	4 cut(s)	482, 575, 758, 937
NcoI	CCATGG	2 cut(s)	136, 861
NdeII	GATC	1 cut(s)	904
NlaIII	CATG	9 cut(s)	37, 88, 140, 532, 559, 639, 744, 865, 1043
NlaIV	GGNNCC	2 cut(s)	150, 388
NmeAIII	GCCGAG	2 cut(s)	56, 826
NmuCI	GTSAC	1 cut(s)	892
NspI	RCATGY	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	966
PagI	TCATGA	1 cut(s)	1039
PceI	AGGCCT	2 cut(s)	257, 972
PfeI	GAWTC	3 cut(s)	510, 532, 664
PkrI	GCNGC	4 cut(s)	229, 571, 814, 964
PpuMI	RGGWCCY	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	1019
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	897, 957
PspGI	CCWGG	2 cut(s)	897, 957
PspN4I	GGNNCC	2 cut(s)	150, 388
PspPI	GGNCC	2 cut(s)	149, 1008
PspPPI	RGGWCCY	1 cut(s)	149
PspXI	VCTCGAGB	1 cut(s)	966
PvuII	CAGCTG	2 cut(s)	620, 815
RsaI	GTAC	2 cut(s)	198, 992
RsaNI	GTAC	2 cut(s)	197, 991
SacI	GAGCTC	1 cut(s)	1019
SaqAI	TTAA	3 cut(s)	69, 105, 669
SatI	GCNGC	4 cut(s)	228, 570, 813, 963
Sau3AI	GATC	1 cut(s)	904
Sau96I	GGNCC	2 cut(s)	149, 1008
ScaI	AGTACT	1 cut(s)	992
ScrFI	CCNGG	2 cut(s)	899, 959
SduI	GDGCHC	1 cut(s)	1019
SfaNI	GCATC	4 cut(s)	89, 234, 748, 951
Sfr274I	CTCGAG	1 cut(s)	966
SinI	GGWCC	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	966
SmlI	CTYRAG	3 cut(s)	668, 966, 1012
SmoI	CTYRAG	3 cut(s)	668, 966, 1012
Sse9I	AATT	5 cut(s)	27, 64, 141, 299, 456
SseBI	AGGCCT	2 cut(s)	257, 972
SsiI	CCGC	4 cut(s)	351, 845, 916, 955
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	1019
StuI	AGGCCT	2 cut(s)	257, 972
StyD4I	CCNGG	2 cut(s)	897, 957
StyI	CCWWGG	3 cut(s)	136, 861, 981
TaaI	ACNGT	2 cut(s)	627, 808
TaiI	ACGT	2 cut(s)	208, 585
TaqI	TCGA	2 cut(s)	508, 967
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	5 cut(s)	27, 64, 141, 299, 456
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	3 cut(s)	510, 532, 664
Tru1I	TTAA	3 cut(s)	69, 105, 669
Tru9I	TTAA	3 cut(s)	69, 105, 669
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	4 cut(s)	227, 569, 812, 962
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	4 cut(s)	57, 111, 545, 572
TspGWI	ACGGA	1 cut(s)	203
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	2 cut(s)	141, 456
XceI	RCATGY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XhoI	CTCGAG	1 cut(s)	966
XspI	CTAG	1 cut(s)	156
ZraI	GACGTC	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.