Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002995

Physical Location & Seq

Genomic Coordinates Forward (+)

26057533 .. 26061157

Gene Structure 3625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65210.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTATATACGAACCTGTCCATCAATTCGGTATGTGGGGGGAGAGTTTCAAAAGCAATATTAGCAATGGGACTATGAACACACCAAACCACATAATAATACCGAATAATCAGAAACTAGACAACAACGTGTCAGAGGATACTTCCCATGGAACAGCAGGAACTCCTCACATGTTCGATCAAGAAGCTTCAACGTCTAGACATCCCGATAAGATACAAAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAGTCGCTTGCGCAAGAAGGCTTATGTTCAGCAACTGGAAACAAGCAGGTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTAGGAAACGGAATAGATACTAATTCTCTCGGTTTTTCGGAAACCATGAATCCAGGGATTGCTGCATTTGAAATGGAATATGGACATTGGGTTGAAGAACAGAACAGACAGATATGTGAACTAAGAACAGTTTTACACGGACACATTAACGATATCGAGCTTCGTTCGCTAGTCGAAAACGCCATGAAACATTACTTTGAGCTTTTCCGGATGAAATCGTCTGCTGCCAAAGCCGATGTCTTCTTCGTCATGTCAGGGATGTGGAGAACTTCAGCAGAACGATTCTTCTTATGGATTGGCGGATTTCGACCCTCCGATCTTCTCAAGGTTCTTTTGCCACATTTTGATGTCTTGACGGATCAACAACTTCTAGATGTATGCAATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGACTCAAGGTATGGAGAAGCTGCAACACACCCTTGCGGACTGCGTTGCAGCGGGACAACTCGGTGAAGGAAGTTACATTCCTCAGGTGAATTCTGCTATGGATAGATTAGAAGCTTTGGTCAGTTTCGTAAATCAGGCTGATCACTTGAGACATGAAACATTGCAACAAATGTATCGGATATTGACAACGCGACAAGCGGCTCGAGGATTATTAGCTCTTGGTGAGTATTTTCAACGGCTTAGAGCCTTGAGCTCAAGTTGGGCAACTCGACATCGTGAACCAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

368

Amino Acids

42.06

Weight (kDa)

7.28

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	12 - 43	2.5e-08	bZIP transcription factor
DOG1	PF14144	100 - 175	8.5e-31	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210
fragaria_vesca	FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900
malus_domestica	MD01G1021600.v1.1 MD15G1330400.v1.1
prunus_persica	Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1
pyrus_communis	pycom01g05010
rosa_chinensis	RchiOBHm_Chr2g0115911
rosa_multiflora	Rmu_ssc0000197.1_g000009
rosa_roxburghii	Rroxscaffold_2G00127690 Rroxscaffold_2G00128520
rosa_rugosa	Rorug02G0200900 Rorug02G0201000 Rorug02G0201100 Rorug02G0201200
rosa_samantha	Rh2BG268900 Rh2CG264400 Rh2DG266100
rosa_wichuraiana	Rw2G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	330
AccII	CGCG	3 cut(s)	279, 815, 1009
AccIII	TCCGGA	1 cut(s)	606
AciI	CCGC	5 cut(s)	277, 699, 854, 869, 1016
AclWI	GGATC	1 cut(s)	765
AcsI	RAATTY	2 cut(s)	4, 907
AcuI	CTGAAG	1 cut(s)	654
AflIII	ACRYGT	3 cut(s)	168, 210, 813
AgsI	TTSAA	7 cut(s)	91, 231, 346, 356, 470, 494, 1052
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	8 cut(s)	227, 349, 559, 601, 838, 932, 1034, 1071
AluI	AGCT	8 cut(s)	227, 349, 559, 601, 838, 932, 1034, 1071
Alw21I	GWGCWC	1 cut(s)	1073
Alw26I	GTCTC	1 cut(s)	961
AlwI	GGATC	1 cut(s)	765
AlwNI	CAGNNNCTG	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	1020
Aor13HI	TCCGGA	1 cut(s)	606
ApeKI	GCWGC	5 cut(s)	284, 461, 623, 838, 866
ApoI	RAATTY	2 cut(s)	4, 907
ArsI	GACNNNNNNTTYG	2 cut(s)	621, 653
AspLEI	GCGC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	893, 916, 1052
AvaI	CYCGRG	1 cut(s)	1020
AxyI	CCTNAGG	1 cut(s)	900
BaeI	ACNNNNGTAYC	2 cut(s)	974, 1007
BanII	GRGCYC	1 cut(s)	1073
BbsI	GAAGAC	2 cut(s)	631, 816
Bbv12I	GWGCWC	1 cut(s)	1073
BbvI	GCAGC	5 cut(s)	271, 448, 610, 825, 878
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	2 cut(s)	278, 1070
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	1 cut(s)	961
BfaI	CTAG	6 cut(s)	158, 237, 288, 381, 569, 770
BfuAI	ACCTGC	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	6 cut(s)	285, 462, 624, 839, 867, 1017
BlsI	GCNGC	6 cut(s)	286, 463, 625, 840, 868, 1018
Bme1390I	CCNGG	1 cut(s)	453
BmeT110I	CYCGRG	1 cut(s)	1020
BmrFI	CCNGG	1 cut(s)	453
BpiI	GAAGAC	2 cut(s)	631, 816
BpuEI	CTTGAG	5 cut(s)	707, 807, 985, 1057, 1087
BsaJI	CCNNGG	2 cut(s)	187, 452
BsaWI	WCCGGW	1 cut(s)	606
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	2 cut(s)	112, 977
BseAI	TCCGGA	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	187, 452
BseGI	GGATG	3 cut(s)	241, 615, 663
BseMI	GCAATG	2 cut(s)	112, 977
BseMII	CTCAG	1 cut(s)	914
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	5 cut(s)	271, 448, 610, 825, 878
Bsh1236I	CGCG	3 cut(s)	279, 815, 1009
Bsh1285I	CGRYCG	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	1073
BsiHKCI	CYCGRG	1 cut(s)	1020
BsiSI	CCGG	1 cut(s)	607
BslFI	GGGAC	2 cut(s)	124, 885
BsmAI	GTCTC	1 cut(s)	961
BsmFI	GGGAC	2 cut(s)	124, 885
BsoBI	CYCGRG	1 cut(s)	1020
Bsp1286I	GDGCHC	1 cut(s)	1073
Bsp13I	TCCGGA	1 cut(s)	606
Bsp143I	GATC	5 cut(s)	217, 373, 715, 757, 958
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	5 cut(s)	277, 699, 854, 869, 1016
BspCNI	CTCAG	1 cut(s)	913
BspEI	TCCGGA	1 cut(s)	606
BspFNI	CGCG	3 cut(s)	279, 815, 1009
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	765
BsrDI	GCAATG	2 cut(s)	112, 977
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	187, 452
BssMI	GATC	5 cut(s)	217, 373, 715, 757, 958
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	529
Bst6I	CTCTTC	1 cut(s)	31
BstC8I	GCNNGC	3 cut(s)	267, 302, 804
BstDEI	CTNAG	3 cut(s)	521, 900, 1058
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	3 cut(s)	241, 615, 663
BstFNI	CGCG	3 cut(s)	279, 815, 1009
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	5 cut(s)	220, 376, 718, 760, 961
BstMAI	GTCTC	1 cut(s)	961
BstMBI	GATC	5 cut(s)	217, 373, 715, 757, 958
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 565, 629, 812
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	451
BstUI	CGCG	3 cut(s)	279, 815, 1009
BstV1I	GCAGC	5 cut(s)	271, 448, 610, 825, 878
BstV2I	GAAGAC	2 cut(s)	631, 816
Bsu36I	CCTNAGG	1 cut(s)	900
BsuI	GTATCC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	241, 615, 663
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	3 cut(s)	267, 302, 804
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	1 cut(s)	306
CseI	GACGC	1 cut(s)	821
CviAII	CATG	6 cut(s)	188, 211, 445, 583, 649, 971
DdeI	CTNAG	3 cut(s)	521, 900, 1058
DpnI	GATC	5 cut(s)	219, 375, 717, 759, 960
DpnII	GATC	5 cut(s)	217, 373, 715, 757, 958
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	1071
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	1073
Eco32I	GATATC	1 cut(s)	553
Eco53kI	GAGCTC	1 cut(s)	1071
Eco57I	CTGAAG	1 cut(s)	654
Eco81I	CCTNAGG	1 cut(s)	900
Eco88I	CYCGRG	1 cut(s)	1020
EcoICRI	GAGCTC	1 cut(s)	1071
EcoRI	GAATTC	2 cut(s)	4, 907
EcoRII	CCWGG	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	1073
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	6 cut(s)	191, 214, 448, 586, 652, 974
FaqI	GGGAC	2 cut(s)	124, 885
FatI	CATG	6 cut(s)	187, 210, 444, 582, 648, 970
FauI	CCCGC	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	6 cut(s)	285, 462, 624, 839, 867, 1017
FokI	GGATG	3 cut(s)	228, 622, 670
FriOI	GRGCYC	1 cut(s)	1073
Fsp4HI	GCNGC	6 cut(s)	285, 462, 624, 839, 867, 1017
FspBI	CTAG	6 cut(s)	158, 237, 288, 381, 569, 770
FspI	TGCGCA	1 cut(s)	305
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	6 cut(s)	285, 462, 624, 839, 867, 1017
HapII	CCGG	1 cut(s)	607
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	6 cut(s)	191, 214, 448, 586, 652, 974
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HindIII	AAGCTT	2 cut(s)	225, 930
HinfI	GANTC	4 cut(s)	393, 448, 681, 820
HpaII	CCGG	1 cut(s)	607
HphI	GGTGA	3 cut(s)	893, 916, 1052
Hpy166II	GTNNAC	3 cut(s)	518, 819, 1097
Hpy188I	TCNGA	5 cut(s)	153, 175, 439, 715, 996
Hpy188III	TCNNGA	7 cut(s)	221, 237, 245, 607, 751, 770, 1094
Hpy8I	GTNNAC	3 cut(s)	518, 819, 1097
HpyAV	CCTTC	2 cut(s)	304, 878
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	3 cut(s)	168, 233, 1103
HpyCH4V	TGCA	5 cut(s)	464, 780, 841, 866, 982
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 565, 629, 812
HpyF3I	CTNAG	3 cut(s)	521, 900, 1058
HpySE526I	ACGT	3 cut(s)	168, 233, 1103
Hsp92II	CATG	6 cut(s)	191, 214, 448, 586, 652, 974
HspAI	GCGC	1 cut(s)	304
Kpn2I	TCCGGA	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	5 cut(s)	217, 373, 715, 757, 958
Lsp1109I	GCAGC	5 cut(s)	271, 448, 610, 825, 878
MaeI	CTAG	6 cut(s)	158, 237, 288, 381, 569, 770
MaeII	ACGT	3 cut(s)	168, 233, 1103
MaeIII	GTNAC	1 cut(s)	890
MalI	GATC	5 cut(s)	219, 375, 717, 759, 960
MboI	GATC	5 cut(s)	217, 373, 715, 757, 958
MboII	GAAGA	7 cut(s)	48, 506, 631, 634, 676, 710, 821
MhlI	GDGCHC	1 cut(s)	1073
MluCI	AATT	6 cut(s)	4, 65, 351, 356, 421, 907
MluI	ACGCGT	1 cut(s)	813
MlyI	GAGTC	1 cut(s)	814
MnlI	CCTC	6 cut(s)	169, 216, 274, 721, 909, 1016
MroI	TCCGGA	1 cut(s)	606
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	1 cut(s)	607
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	3 cut(s)	279, 815, 1009
MwoI	GCNNNNNNNGC	4 cut(s)	102, 565, 629, 812
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	5 cut(s)	217, 373, 715, 757, 958
NlaIII	CATG	6 cut(s)	191, 214, 448, 586, 652, 974
NsbI	TGCGCA	1 cut(s)	305
NspI	RCATGY	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	1020
PciI	ACATGT	1 cut(s)	210
PfeI	GAWTC	3 cut(s)	393, 448, 681
PkrI	GCNGC	6 cut(s)	286, 463, 625, 840, 868, 1018
Ple19I	CGATCG	1 cut(s)	376
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
PscI	ACATGT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	1073
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspXI	VCTCGAGB	1 cut(s)	1020
PstNI	CAGNNNCTG	1 cut(s)	328
PvuI	CGATCG	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	1073
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	6 cut(s)	285, 462, 624, 839, 867, 1017
Sau3AI	GATC	5 cut(s)	217, 373, 715, 757, 958
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	1073
Sfr274I	CTCGAG	1 cut(s)	1020
SlaI	CTCGAG	1 cut(s)	1020
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	6 cut(s)	722, 822, 964, 1020, 1066, 1072
SmoI	CTYRAG	6 cut(s)	722, 822, 964, 1020, 1066, 1072
Sse9I	AATT	6 cut(s)	4, 65, 351, 356, 421, 907
SsiI	CCGC	5 cut(s)	277, 699, 854, 869, 1016
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	6 cut(s)	158, 237, 288, 381, 569, 770
SstI	GAGCTC	1 cut(s)	1073
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	3 cut(s)	171, 236, 1106
TaqI	TCGA	9 cut(s)	8, 14, 216, 372, 555, 573, 706, 1021, 1087
TasI	AATT	6 cut(s)	4, 65, 351, 356, 421, 907
TauI	GCSGC	1 cut(s)	1019
TfiI	GAWTC	3 cut(s)	393, 448, 681
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TseI	GCWGC	5 cut(s)	284, 461, 623, 838, 866
TspDTI	ATGAA	6 cut(s)	17, 131, 461, 599, 626, 987
TspGWI	ACGGA	3 cut(s)	423, 552, 770
XapI	RAATTY	2 cut(s)	4, 907
XbaI	TCTAGA	2 cut(s)	236, 769
XceI	RCATGY	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	1020
XspI	CTAG	6 cut(s)	158, 237, 288, 381, 569, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.