Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002995

Physical Location & Seq

Genomic Coordinates Forward (+)

13845692 .. 13851384

Gene Structure 5693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21900.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAATTCTCATTCCACCCAGTTTGTCACCTCAAGAAGGATGAGTGCCTATGAGCCAATACACCAGATGAGCATGTGGGGAGAAAGCTTTATGGATAATGGTAGTTTGAATGCCTCAGCATCCCTGATCATGGATGCAGACACAAAGCTAGATAATCAGTCAGAAGATACCTCTCAAGGACTCCTGGGACCTTCAAGCAAGTATGACCAAGAAGCAACCAAACCTACAGACAAGGTGCAAAGGCGTCTTGCCCAAAACCGGGAGGCTGCTCGTAAAAGCCGGATGAGAAAGAAGGCCTATGTTCAGCAGTTAGAAACAAGTCGTTTAAAGCTTGTTCAATTAGAGCAAGAGCTTGACAGAGCAAGACAACAGGGTCTTTATATTGGAAGTGGACTGGATGCTAATCCTCTGGGATATTCTGGCAGCATGAACTCAGGTGTTGCTGCATTTGAAATGGAGTATGGACACTGGGTGGATGAACAAAATAGGCAGATTTCTGAACTGAGGACTGCGTTGCAGGCTCAGATAAGTGACATAGAGCTTCGTTTTCTTGTAGATGGTGGCATGAGTCACTATTTTGAACTTTTCAGCATGAAATCAAAAGCTGCAAAAGCAGATGTTTTCTATGTAATGTCTGGGATGTGGAAAACATCAGCTGAGCGGTTTTTCTCGTGGATTGGAGGATTTCGCCCTTCAGAGCTTCTTAAGGTTCTTCTGCCTCAACTGTGCCCCTTGGCAGATCAACAACTTTTGGATGTTAGCAGCCTTAAGCAATCATGTCAACAAGCAGAAGATGCTCTTTCACAAGGTATGGATAAACTACAGCTCACTTTAGCTTCGGCTGTGGCAGCTGATCATCCGGGTGAAGGTATTTATGTCCCACAGATGGCCATCGCAATGGAGAAGTTGGAAGCTCTGGTGGACTTTGTGAACCAGGCTGATCATCTTCGGAAGGAGACCTTACAGCAGATGTCACGCATCCTTACAATCCGCCAGGCAGCTCGAGGCCTTCTTGCTTTGGGAGAGTACTTCCAACGCCTCCGAGCTTTGAGCTCCCTTTGGACAACTCGACCTCGTGAGCCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

363

Amino Acids

40.74

Weight (kDa)

6.35

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	76 - 116	5e-08	bZIP transcription factor
DOG1	PF14144	164 - 239	6.7e-31	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210
fragaria_vesca	FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900
malus_domestica	MD01G1021600.v1.1 MD15G1330400.v1.1
prunus_persica	Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1
pyrus_communis	pycom01g05010
rosa_chinensis	RchiOBHm_Chr2g0115911
rosa_multiflora	Rmu_ssc0000197.1_g000009
rosa_roxburghii	Rroxscaffold_2G00127690 Rroxscaffold_2G00128520
rosa_rugosa	Rorug02G0200900 Rorug02G0201000 Rorug02G0201100 Rorug02G0201200
rosa_samantha	Rh2BG268900 Rh2CG264400 Rh2DG266100
rosa_wichuraiana	Rw2G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	372
AccBSI	CCGCTC	1 cut(s)	661
AciI	CCGC	2 cut(s)	661, 991
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	244
AdeI	CACNNNGTG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	1028
AfiI	CCNNNNNNNGG	6 cut(s)	36, 130, 258, 259, 866, 886
AflII	CTTAAG	2 cut(s)	704, 767
AgsI	TTSAA	5 cut(s)	109, 195, 338, 452, 581
AjnI	CCWGG	3 cut(s)	183, 933, 993
Alw21I	GWGCWC	1 cut(s)	1055
Alw26I	GTCTC	1 cut(s)	950
Ama87I	CYCGRG	1 cut(s)	1002
AoxI	GGCC	3 cut(s)	294, 888, 1006
ApeKI	GCWGC	7 cut(s)	266, 423, 443, 605, 762, 848, 998
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	2 cut(s)	260, 861
AsuHPI	GGTGA	2 cut(s)	19, 875
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	731
BalI	TGGCCA	1 cut(s)	890
BanII	GRGCYC	1 cut(s)	1055
BauI	CACGAG	2 cut(s)	670, 1074
Bbv12I	GWGCWC	1 cut(s)	1055
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	7 cut(s)	253, 430, 435, 592, 774, 860, 1010
BccI	CCATC	3 cut(s)	551, 880, 899
BciT130I	CCWGG	3 cut(s)	185, 935, 995
BclI	TGATCA	3 cut(s)	126, 853, 940
BcnI	CCSGG	2 cut(s)	260, 861
BcoDI	GTCTC	1 cut(s)	950
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	2 cut(s)	225, 821
BfrI	CTTAAG	2 cut(s)	704, 767
BisI	GCNGC	7 cut(s)	267, 424, 444, 606, 763, 849, 999
BlpI	GCTNAGC	1 cut(s)	657
BlsI	GCNGC	7 cut(s)	268, 425, 445, 607, 764, 850, 1000
BmcAI	AGTACT	1 cut(s)	1028
Bme1390I	CCNGG	5 cut(s)	185, 260, 861, 935, 995
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	1002
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	5 cut(s)	185, 260, 861, 935, 995
BmrI	ACTGGG	2 cut(s)	13, 478
BmsI	GCATC	5 cut(s)	124, 128, 388, 784, 987
BmuI	ACTGGG	2 cut(s)	13, 478
Bpu10I	CCTNAGC	1 cut(s)	115
Bpu1102I	GCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	2 cut(s)	16, 159
BpuMI	CCSGG	2 cut(s)	260, 861
BsaBI	GATNNNNATC	2 cut(s)	402, 890
BsaHI	GRCGYC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	950
BsaJI	CCNNGG	2 cut(s)	184, 732
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 130, 258, 259, 866, 886
Bse1I	ACTGG	3 cut(s)	19, 399, 473
Bse3DI	GCAATG	1 cut(s)	903
Bse8I	GATNNNNATC	2 cut(s)	402, 890
BseBI	CCWGG	3 cut(s)	185, 935, 995
BseDI	CCNNGG	2 cut(s)	184, 732
BseJI	GATNNNNATC	2 cut(s)	402, 890
BseLI	CCNNNNNNNGG	6 cut(s)	36, 130, 258, 259, 866, 886
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	5 cut(s)	129, 447, 494, 536, 648
BseNI	ACTGG	3 cut(s)	19, 399, 473
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	7 cut(s)	253, 430, 435, 592, 774, 860, 1010
BshFI	GGCC	3 cut(s)	296, 890, 1008
BsiHKAI	GWGCWC	1 cut(s)	1055
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	3 cut(s)	259, 280, 860
BslFI	GGGAC	2 cut(s)	201, 863
BslI	CCNNNNNNNGG	6 cut(s)	36, 130, 258, 259, 866, 886
BsmAI	GTCTC	1 cut(s)	950
BsmFI	GGGAC	2 cut(s)	201, 863
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	3 cut(s)	296, 890, 1008
Bso31I	GGTCTC	1 cut(s)	950
BsoBI	CYCGRG	1 cut(s)	1002
Bsp1286I	GDGCHC	2 cut(s)	731, 1055
Bsp143I	GATC	4 cut(s)	126, 739, 853, 940
Bsp1720I	GCTNAGC	1 cut(s)	657
BspACI	CCGC	2 cut(s)	661, 991
BspANI	GGCC	3 cut(s)	296, 890, 1008
BspCNI	CTCAG	5 cut(s)	128, 446, 495, 535, 649
BspLI	GGNNCC	1 cut(s)	189
BspTI	CTTAAG	2 cut(s)	704, 767
BspTNI	GGTCTC	1 cut(s)	950
BsrBI	CCGCTC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	3 cut(s)	19, 399, 473
BssECI	CCNNGG	2 cut(s)	184, 732
BssMI	GATC	4 cut(s)	126, 739, 853, 940
BssNI	GRCGYC	1 cut(s)	244
BssSI	CACGAG	2 cut(s)	670, 1074
BssT1I	CCWWGG	1 cut(s)	732
Bst2BI	CACGAG	2 cut(s)	670, 1074
Bst2UI	CCWGG	3 cut(s)	185, 935, 995
Bst4CI	ACNGT	1 cut(s)	726
BstACI	GRCGYC	1 cut(s)	244
BstAFI	CTTAAG	2 cut(s)	704, 767
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	5 cut(s)	115, 433, 503, 522, 657
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstKTI	GATC	4 cut(s)	129, 742, 856, 943
BstMAI	GTCTC	1 cut(s)	950
BstMBI	GATC	4 cut(s)	126, 739, 853, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	518, 611, 794, 848
BstNI	CCWGG	3 cut(s)	185, 935, 995
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	5 cut(s)	183, 258, 859, 933, 993
BstSFI	CTRYAG	2 cut(s)	225, 821
BstSLI	GKGCMC	1 cut(s)	731
BstV1I	GCAGC	7 cut(s)	253, 430, 435, 592, 774, 860, 1010
BstXI	CCANNNNNNTGG	1 cut(s)	898
BsuRI	GGCC	3 cut(s)	296, 890, 1008
BtgZI	GCGATG	1 cut(s)	877
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	1027
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	6 cut(s)	73, 130, 427, 565, 592, 777
CviQI	GTAC	1 cut(s)	1027
DdeI	CTNAG	5 cut(s)	115, 433, 503, 522, 657
DpnI	GATC	4 cut(s)	128, 741, 855, 942
DpnII	GATC	4 cut(s)	126, 739, 853, 940
DraI	TTTAAA	1 cut(s)	327
DraIII	CACNNNGTG	1 cut(s)	472
DrdI	GACNNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	888
EciI	GGCGGA	1 cut(s)	980
Ecl136II	GAGCTC	1 cut(s)	1053
Eco130I	CCWWGG	1 cut(s)	732
Eco147I	AGGCCT	2 cut(s)	296, 1008
Eco24I	GRGCYC	1 cut(s)	1055
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	1053
Eco57I	CTGAAG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	1002
EcoICRI	GAGCTC	1 cut(s)	1053
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	183, 933, 993
EcoT14I	CCWWGG	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	1055
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	6 cut(s)	76, 133, 430, 568, 595, 780
FalI	AAGNNNNNCTT	4 cut(s)	783, 815, 944, 976
FaqI	GGGAC	2 cut(s)	201, 863
FatI	CATG	6 cut(s)	72, 129, 426, 564, 591, 776
FbaI	TGATCA	3 cut(s)	126, 853, 940
Fnu4HI	GCNGC	7 cut(s)	267, 424, 444, 606, 763, 849, 999
FriOI	GRGCYC	1 cut(s)	1055
Fsp4HI	GCNGC	7 cut(s)	267, 424, 444, 606, 763, 849, 999
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	7 cut(s)	267, 424, 444, 606, 763, 849, 999
HaeIII	GGCC	3 cut(s)	296, 890, 1008
HapII	CCGG	3 cut(s)	259, 280, 860
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	6 cut(s)	76, 133, 430, 568, 595, 780
HincII	GTYRAC	1 cut(s)	782
HindII	GTYRAC	1 cut(s)	782
HindIII	AAGCTT	2 cut(s)	85, 329
HinfI	GANTC	2 cut(s)	180, 568
HpaII	CCGG	3 cut(s)	259, 280, 860
HphI	GGTGA	2 cut(s)	19, 875
Hpy166II	GTNNAC	4 cut(s)	392, 782, 922, 931
Hpy188I	TCNGA	6 cut(s)	163, 499, 525, 697, 951, 1043
Hpy188III	TCNNGA	2 cut(s)	33, 1076
Hpy8I	GTNNAC	4 cut(s)	392, 782, 922, 931
HpyAV	CCTTC	7 cut(s)	30, 201, 286, 702, 860, 946, 1019
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4V	TGCA	5 cut(s)	137, 238, 446, 517, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	518, 611, 794, 848
HpyF3I	CTNAG	5 cut(s)	115, 433, 503, 522, 657
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	6 cut(s)	76, 133, 430, 568, 595, 780
Ksp22I	TGATCA	3 cut(s)	126, 853, 940
Kzo9I	GATC	4 cut(s)	126, 739, 853, 940
LmnI	GCTCC	1 cut(s)	1058
Lsp1109I	GCAGC	7 cut(s)	253, 430, 435, 592, 774, 860, 1010
LweI	GCATC	5 cut(s)	124, 128, 388, 784, 987
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	4 cut(s)	25, 530, 569, 972
MalI	GATC	4 cut(s)	128, 741, 855, 942
MbiI	CCGCTC	1 cut(s)	661
MboI	GATC	4 cut(s)	126, 739, 853, 940
MboII	GAAGA	4 cut(s)	176, 704, 803, 938
MhlI	GDGCHC	2 cut(s)	731, 1055
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	2 cut(s)	4, 338
MluNI	TGGCCA	1 cut(s)	890
MlyI	GAGTC	2 cut(s)	174, 577
MmeI	TCCRAC	2 cut(s)	888, 1057
Mox20I	TGGCCA	1 cut(s)	890
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	3 cut(s)	326, 705, 768
MslI	CAYNNNNRTG	2 cut(s)	861, 896
Msp20I	TGGCCA	1 cut(s)	890
MspA1I	CMGCKG	2 cut(s)	656, 851
MspCI	CTTAAG	2 cut(s)	704, 767
MspI	CCGG	3 cut(s)	259, 280, 860
MspR9I	CCNGG	5 cut(s)	185, 260, 861, 935, 995
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	3 cut(s)	185, 935, 995
MwoI	GCNNNNNNNGC	4 cut(s)	518, 611, 794, 848
NciI	CCSGG	2 cut(s)	260, 861
NdeII	GATC	4 cut(s)	126, 739, 853, 940
NlaIII	CATG	6 cut(s)	76, 133, 430, 568, 595, 780
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	4 cut(s)	25, 530, 569, 972
NspI	RCATGY	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	1002
PceI	AGGCCT	2 cut(s)	296, 1008
PctI	GAATGC	1 cut(s)	115
PkrI	GCNGC	7 cut(s)	268, 425, 445, 607, 764, 850, 1000
PleI	GAGTC	2 cut(s)	174, 576
PpsI	GAGTC	2 cut(s)	174, 576
PpuMI	RGGWCCY	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	1055
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	3 cut(s)	183, 933, 993
PspGI	CCWGG	3 cut(s)	183, 933, 993
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	188
PspPPI	RGGWCCY	1 cut(s)	188
PspXI	VCTCGAGB	1 cut(s)	1002
PvuII	CAGCTG	2 cut(s)	656, 851
RsaI	GTAC	1 cut(s)	1028
RsaNI	GTAC	1 cut(s)	1027
RseI	CAYNNNNRTG	2 cut(s)	861, 896
SacI	GAGCTC	1 cut(s)	1055
SaqAI	TTAA	3 cut(s)	326, 705, 768
SatI	GCNGC	7 cut(s)	267, 424, 444, 606, 763, 849, 999
Sau3AI	GATC	4 cut(s)	126, 739, 853, 940
Sau96I	GGNCC	1 cut(s)	188
ScaI	AGTACT	1 cut(s)	1028
SchI	GAGTC	2 cut(s)	174, 577
ScrFI	CCNGG	5 cut(s)	185, 260, 861, 935, 995
SduI	GDGCHC	2 cut(s)	731, 1055
SfaNI	GCATC	5 cut(s)	124, 128, 388, 784, 987
SfcI	CTRYAG	2 cut(s)	225, 821
Sfr274I	CTCGAG	1 cut(s)	1002
SinI	GGWCC	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	2 cut(s)	861, 896
SmlI	CTYRAG	5 cut(s)	31, 174, 704, 767, 1002
SmoI	CTYRAG	5 cut(s)	31, 174, 704, 767, 1002
Sse9I	AATT	2 cut(s)	4, 338
SseBI	AGGCCT	2 cut(s)	296, 1008
SsiI	CCGC	2 cut(s)	661, 991
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	1055
StuI	AGGCCT	2 cut(s)	296, 1008
StyD4I	CCNGG	5 cut(s)	183, 258, 859, 933, 993
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	726
TaqI	TCGA	2 cut(s)	1003, 1069
TasI	AATT	2 cut(s)	4, 338
TatI	WGTACW	1 cut(s)	1026
Tru1I	TTAA	3 cut(s)	326, 705, 768
Tru9I	TTAA	3 cut(s)	326, 705, 768
TscAI	CASTG	1 cut(s)	473
TseFI	GTSAC	4 cut(s)	25, 530, 569, 972
TseI	GCWGC	7 cut(s)	266, 423, 443, 605, 762, 848, 998
Tsp45I	GTSAC	4 cut(s)	25, 530, 569, 972
TspDTI	ATGAA	4 cut(s)	17, 443, 492, 608
TspRI	CASTG	1 cut(s)	473
Vha464I	CTTAAG	2 cut(s)	704, 767
VpaK11BI	GGWCC	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	1002
XspI	CTAG	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.