Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002995

Physical Location & Seq

Genomic Coordinates Forward (+)

18818932 .. 18824494

Gene Structure 5563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0201100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGCGAAGGTTGTATCAGATATCGATCTCTGTCTACAGAAAACCCAATCTCTCAATTTCAATTTCGTCCAATCCAAACAGCCCCTTACACCTCTTCCACACAATTCACAAACCCACCAAACAAACCAACAACCATGTATTCACCGAACGAAGATCAGGTCTCGGGTTGGTCCGTCTCGAAACCGACCCGGGACCAAGCCCAGACGACCCGACCCACTGCGAGTTCGCCGCCGACGTGGAGAAGATATACAGAATATTACGCAAATTCCACTCCCGGGTCCCCAAATTAGAGCTCGCTCTACATCAATCCGGCGTCGTTTTGCGCTCCGGCTTAACCGAGCGAGTGCTGAACCGGTGCGGCGACGCCGGAAACTTGGGGTACAGGTTCTTCGTCTGGGCCTCGCAGCAGCCCAATTACAGACCCAGTTACGATGTGTACAAGGCCATGATCAAGTCCCTGAGCAAAATGCGGCAATTCGGCGCCGTTTGGGCTCTGCTTGAGGAGATGAGGAGAGAAAATCAGGAGCTAATTACTGTGGAAATGTTTGTGGTTTTGATGCGGCGTTTCGCTTCGGCGAGGATGGTGAAGAAAGCAGTGGAGGTGCTCGATGAAATGCCCAAGTACGGGTGCGAGGCGGATGAGTATGCTTTTGGGTGCTTGCTTGATGCTCTGTGTAAAAATGGGAGTGTGAAAGAAGCGGCGAGTTTGTTTGAGGATATGAGAGTTAGGTTCAAGCCTAGTATTAGGCATTTTACTTCTTTGTTGTATGGGTGGTGTAGAGCAGGGAAGCTAATGGAGGCGAAGCATGTGTTGGTGCAGATGAGGGAGGGAGGGTTCGAGCCGGACATTGTGGTGTATAACAATTTGCTTGGTGGGTATGCTCAGGCTGGGAAGATGGCTGATGCGTATGAGCTGTTGAAGGAGATGAGGAGGAAGGGTTGTGAGCCCAATGCGGCTTCGTATACGACTGTGATTCAGGCGCTTTGCGGGCAGGAGAAGATGGAGGAGGCGATGAGGGTGTTTGTGGAGATGGAGAGGAGTGGTTGTGAGGCGGATGTTGTTACTTATACTACTTTGATTAGTGGGTTTTGTAAGTGGGGGAAGATTGTGAGGAGTTATGAGATTTTGGAGAGTATGGTACAGAGAGGGTTTACGCCGAGTCAGATGACTTACTTGCAGATTATGTTGGCTCATGAGAAGAAGGAAGACCTGGAGGAGTGTATGGAATTAATGGGGGAGATGAGGAAGATTGGTTGCATGCCTGATCTTGGTATTTACAACACGGTGATTCGGTTGGCTTGCAAATTGGGGGAGGTGAAAGAAGGTGTTCGGCTTTGGAATGAAATGGAAGAAGCTGGGTTTTCTCCGGGGCTTGACACCTTTGTCATTATGATTCATGGGTTTCTCGGGCAAGGTTGTTTGATCGAAGCTTGTGATTACTTCAAAGAAATGGTTGGCAGAGGCCTTCTATCTGGGCCACAATACGGTACCTTGAAGGAGTTAATGAATGCTTTGTTAAGAGATGAGAAGCTAGAAATGGCTAAAGATGTTTGGAGTTGCATTGTGACCAAGGGTTGTGAGCTTAACGTGTATGCATGGACAATTTGGATTCATGCACTGTTTTCAAAGGGGCATGTGAAAGAGGCTTGCTCATACTGCTTGGACATGATGGAGGCAGATGTAATGCCACAGCCGGATACTTTTGCGAAGCTCATGCGTGGTTTAAAGAAACTTTATAACAGACAGATTGCTGCTGAGATCACAGAGAAGGTGAGGCAGATGGCTGCAGATAGAAAGATCACTTTCAAGATGTATAAAAGACGCGGAGAGAGGGACTTGAACGAAAAAGTTAAGGAGAAGAAGGATGGGGGAAGGAAACGGAGGGCTCGAAAACGGCAATGGCCTAGTAAAGCTAAAGCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

641

Amino Acids

73.51

Weight (kDa)

9.03

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	184 - 226	4e-08	PPR repeat family
PPR_long	PF17177	193 - 311	3.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	209 - 241	6.3e-08	PPR repeat
PPR_3	PF13812	236 - 291	6.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	244 - 275	7.9e-06	PPR repeat
PPR_3	PF13812	278 - 328	5.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	278 - 310	2e-08	PPR repeat
PPR_2	PF13041	281 - 329	3.6e-18	PPR repeat family
PPR	PF01535	284 - 314	3.2e-08	PPR repeat
PPR_long	PF17177	299 - 392	3.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	312 - 345	7.8e-09	PPR repeat
PPR	PF01535	320 - 349	9.6e-07	PPR repeat
PPR_2	PF13041	320 - 365	3.6e-17	PPR repeat family
TPR_24	PF23276	337 - 448	8e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	339 - 395	2.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	348 - 380	3e-10	PPR repeat
PPR_2	PF13041	352 - 392	3.5e-09	PPR repeat family
PPR	PF01535	354 - 384	6.1e-07	PPR repeat
PPR_3	PF13812	375 - 432	9.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	418 - 450	6.7e-07	PPR repeat
PPR_2	PF13041	425 - 468	6.5e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210
fragaria_vesca	FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900
malus_domestica	MD01G1021600.v1.1 MD15G1330400.v1.1
prunus_persica	Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1
pyrus_communis	pycom01g05010
rosa_chinensis	RchiOBHm_Chr2g0115911
rosa_multiflora	Rmu_ssc0000197.1_g000009
rosa_roxburghii	Rroxscaffold_2G00127690 Rroxscaffold_2G00128520
rosa_rugosa	Rorug02G0200900 Rorug02G0201000 Rorug02G0201100 Rorug02G0201200
rosa_samantha	Rh2BG268900 Rh2CG264400 Rh2DG266100
rosa_wichuraiana	Rw2G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1737
AasI	GACNNNNNNGTC	1 cut(s)	1382
Acc65I	GGTACC	1 cut(s)	1487
AccB1I	GGYRCC	2 cut(s)	479, 1487
AccI	GTMKAC	2 cut(s)	33, 962
AccII	CGCG	1 cut(s)	1824
AcsI	RAATTY	1 cut(s)	263
AcyI	GRCGYC	3 cut(s)	312, 363, 480
AfaI	GTAC	5 cut(s)	380, 437, 623, 1140, 1489
AfiI	CCNNNNNNNGG	5 cut(s)	274, 623, 624, 1268, 1484
AflIII	ACRYGT	1 cut(s)	1587
AgeI	ACCGGT	1 cut(s)	351
AgsI	TTSAA	8 cut(s)	60, 733, 919, 1444, 1495, 1626, 1807, 1840
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	1209
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AloI	GAACNNNNNNTCC	2 cut(s)	818, 850
Alw21I	GWGCWC	2 cut(s)	294, 606
Alw26I	GTCTC	2 cut(s)	164, 179
Ama87I	CYCGRG	4 cut(s)	161, 187, 273, 1406
AoxI	GGCC	5 cut(s)	396, 441, 1462, 1475, 1901
ApeKI	GCWGC	4 cut(s)	403, 406, 1751, 1784
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AseI	ATTAAT	1 cut(s)	1229
AsiGI	ACCGGT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	1326
Asp718I	GGTACC	1 cut(s)	1487
AspLEI	GCGC	3 cut(s)	324, 482, 982
AspS9I	GGNCC	5 cut(s)	169, 191, 277, 396, 1475
AsuC2I	CCSGG	5 cut(s)	188, 189, 274, 275, 1368
AsuHPI	GGTGA	5 cut(s)	133, 595, 1297, 1327, 1783
AvaI	CYCGRG	4 cut(s)	161, 187, 273, 1406
AvaII	GGWCC	3 cut(s)	169, 191, 277
BanI	GGYRCC	2 cut(s)	479, 1487
BanII	GRGCYC	4 cut(s)	294, 493, 948, 1888
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BbsI	GAAGAC	1 cut(s)	1212
Bbv12I	GWGCWC	2 cut(s)	294, 606
BbvI	GCAGC	4 cut(s)	415, 418, 1738, 1771
BccI	CCATC	7 cut(s)	574, 889, 994, 1024, 1663, 1774, 1859
BceAI	ACGGC	2 cut(s)	467, 1910
BcgI	CGANNNNNNTGC	2 cut(s)	1696, 1730
BciT130I	CCWGG	1 cut(s)	1211
BciVI	GTATCC	1 cut(s)	1690
BclI	TGATCA	1 cut(s)	447
BcnI	CCSGG	5 cut(s)	188, 189, 274, 275, 1368
BcoDI	GTCTC	2 cut(s)	164, 179
BfaI	CTAG	3 cut(s)	738, 1532, 1905
BfmI	CTRYAG	2 cut(s)	34, 1785
BfoI	RGCGCY	2 cut(s)	483, 983
BfuI	GTATCC	1 cut(s)	1690
BglI	GCCNNNNNGGC	1 cut(s)	488
Bme1390I	CCNGG	6 cut(s)	188, 189, 274, 275, 1211, 1368
Bme18I	GGWCC	3 cut(s)	169, 191, 277
BmeT110I	CYCGRG	4 cut(s)	161, 187, 273, 1406
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	5 cut(s)	169, 191, 277, 396, 1475
BmiI	GGNNCC	5 cut(s)	192, 278, 279, 481, 1489
BmrFI	CCNGG	6 cut(s)	188, 189, 274, 275, 1211, 1368
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	546, 655, 892
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	1212
BplI	GAGNNNNNCTC	2 cut(s)	1634, 1666
BpmI	CTGGAG	1 cut(s)	1232
Bpu10I	CCTNAGC	2 cut(s)	458, 882
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	5 cut(s)	188, 189, 274, 275, 1368
Bsa29I	ATCGAT	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	23
BsaHI	GRCGYC	3 cut(s)	312, 363, 480
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	4 cut(s)	187, 273, 1367, 1569
BsaWI	WCCGGW	1 cut(s)	351
BsaXI	ACNNNNNCTCC	6 cut(s)	818, 848, 922, 952, 1030, 1060
Bsc4I	CCNNNNNNNGG	5 cut(s)	274, 623, 624, 1268, 1484
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	1904
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	1211
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	4 cut(s)	187, 273, 1367, 1569
BseGI	GGATG	4 cut(s)	585, 643, 1060, 1870
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	5 cut(s)	274, 623, 624, 1268, 1484
BseMI	GCAATG	1 cut(s)	1904
BseMII	CTCAG	3 cut(s)	449, 896, 1746
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	7 cut(s)	515, 523, 943, 1019, 1051, 1126, 1229
BseXI	GCAGC	4 cut(s)	415, 418, 1738, 1771
BseYI	CCCAGC	2 cut(s)	887, 1355
BsgI	GTGCAG	1 cut(s)	836
Bsh1236I	CGCG	1 cut(s)	1824
BshFI	GGCC	5 cut(s)	398, 443, 1464, 1477, 1903
BshNI	GGYRCC	2 cut(s)	479, 1487
BshTI	ACCGGT	1 cut(s)	351
BshVI	ATCGAT	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	294, 606
BsiHKCI	CYCGRG	4 cut(s)	161, 187, 273, 1406
BsiSI	CCGG	9 cut(s)	188, 274, 309, 327, 352, 366, 842, 1367, 1694
BslFI	GGGAC	4 cut(s)	204, 263, 439, 1847
BslI	CCNNNNNNNGG	5 cut(s)	274, 623, 624, 1268, 1484
BsmAI	GTCTC	2 cut(s)	164, 179
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	4 cut(s)	204, 263, 439, 1847
BsmI	GAATGC	1 cut(s)	1513
BsnI	GGCC	5 cut(s)	398, 443, 1464, 1477, 1903
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	4 cut(s)	161, 187, 273, 1406
Bsp1286I	GDGCHC	5 cut(s)	294, 493, 606, 948, 1888
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	7 cut(s)	24, 152, 447, 1264, 1422, 1758, 1797
BspANI	GGCC	5 cut(s)	398, 443, 1464, 1477, 1903
BspCNI	CTCAG	3 cut(s)	450, 895, 1747
BspDI	ATCGAT	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	1824
BspHI	TCATGA	1 cut(s)	1192
BspLI	GGNNCC	5 cut(s)	192, 278, 279, 481, 1489
BspMAI	CTGCAG	1 cut(s)	1789
BspT107I	GGYRCC	2 cut(s)	479, 1487
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	1904
BsrFI	RCCGGY	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	4 cut(s)	187, 273, 1367, 1569
BssMI	GATC	7 cut(s)	24, 152, 447, 1264, 1422, 1758, 1797
BssNAI	GTATAC	1 cut(s)	963
BssNI	GRCGYC	3 cut(s)	312, 363, 480
BssT1I	CCWWGG	1 cut(s)	1569
Bst1107I	GTATAC	1 cut(s)	963
Bst2UI	CCWGG	1 cut(s)	1211
Bst4CI	ACNGT	5 cut(s)	535, 970, 1285, 1487, 1620
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	3 cut(s)	312, 363, 480
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	6 cut(s)	294, 659, 989, 1259, 1300, 1648
BstDEI	CTNAG	3 cut(s)	458, 882, 1755
BstF5I	GGATG	4 cut(s)	585, 643, 1060, 1870
BstFNI	CGCG	1 cut(s)	1824
BstH2I	RGCGCY	2 cut(s)	483, 983
BstHHI	GCGC	3 cut(s)	324, 482, 982
BstKTI	GATC	7 cut(s)	27, 155, 450, 1267, 1425, 1761, 1800
BstMAI	GTCTC	2 cut(s)	164, 179
BstMBI	GATC	7 cut(s)	24, 152, 447, 1264, 1422, 1758, 1797
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 988, 1656
BstNI	CCWGG	1 cut(s)	1211
BstNSI	RCATGY	3 cut(s)	809, 1261, 1637
BstSCI	CCNGG	6 cut(s)	186, 187, 272, 273, 1209, 1366
BstSFI	CTRYAG	2 cut(s)	34, 1785
BstUI	CGCG	1 cut(s)	1824
BstV1I	GCAGC	4 cut(s)	415, 418, 1738, 1771
BstV2I	GAAGAC	1 cut(s)	1212
BstZ17I	GTATAC	1 cut(s)	963
Bsu15I	ATCGAT	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	1690
BsuRI	GGCC	5 cut(s)	398, 443, 1464, 1477, 1903
BsuTUI	ATCGAT	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	1025
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	4 cut(s)	585, 643, 1060, 1870
BtsI	GCAGTG	2 cut(s)	214, 600
BtsIMutI	CAGTG	3 cut(s)	214, 600, 1616
Cac8I	GCNNGC	6 cut(s)	294, 659, 989, 1259, 1300, 1648
CciI	TCATGA	1 cut(s)	1192
CfoI	GCGC	3 cut(s)	324, 482, 982
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	5 cut(s)	169, 191, 277, 396, 1475
Cfr9I	CCCGGG	2 cut(s)	187, 273
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	3 cut(s)	301, 371, 1830
Csp6I	GTAC	5 cut(s)	379, 436, 622, 1139, 1488
CspAI	ACCGGT	1 cut(s)	351
CviQI	GTAC	5 cut(s)	379, 436, 622, 1139, 1488
DdeI	CTNAG	3 cut(s)	458, 882, 1755
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	7 cut(s)	26, 154, 449, 1266, 1424, 1760, 1799
DpnII	GATC	7 cut(s)	24, 152, 447, 1264, 1422, 1758, 1797
DraI	TTTAAA	1 cut(s)	1725
DrdI	GACNNNNNNGTC	1 cut(s)	1382
DseDI	GACNNNNNNGTC	1 cut(s)	1382
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	2 cut(s)	650, 1067
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	1569
Eco147I	AGGCCT	1 cut(s)	1464
Eco24I	GRGCYC	4 cut(s)	294, 493, 948, 1888
Eco31I	GGTCTC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	3 cut(s)	169, 191, 277
Eco53kI	GAGCTC	1 cut(s)	292
Eco88I	CYCGRG	4 cut(s)	161, 187, 273, 1406
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	1209
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	1569
EcoT22I	ATGCAT	1 cut(s)	1597
EcoT38I	GRGCYC	4 cut(s)	294, 493, 948, 1888
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	1569
Esp3I	CGTCTC	1 cut(s)	179
FaqI	GGGAC	4 cut(s)	204, 263, 439, 1847
FauI	CCCGC	1 cut(s)	980
FbaI	TGATCA	1 cut(s)	447
FblI	GTMKAC	2 cut(s)	33, 962
FokI	GGATG	4 cut(s)	592, 650, 1067, 1877
FriOI	GRGCYC	4 cut(s)	294, 493, 948, 1888
FspBI	CTAG	3 cut(s)	738, 1532, 1905
GlaI	GCGC	3 cut(s)	323, 481, 981
GsaI	CCCAGC	2 cut(s)	891, 1359
GsuI	CTGGAG	1 cut(s)	1232
HaeII	RGCGCY	2 cut(s)	483, 983
HaeIII	GGCC	5 cut(s)	398, 443, 1464, 1477, 1903
HapII	CCGG	9 cut(s)	188, 274, 309, 327, 352, 366, 842, 1367, 1694
HgaI	GACGC	3 cut(s)	301, 371, 1830
HhaI	GCGC	3 cut(s)	324, 482, 982
Hin1I	GRCGYC	3 cut(s)	312, 363, 480
Hin6I	GCGC	3 cut(s)	322, 480, 980
HinP1I	GCGC	3 cut(s)	322, 480, 980
HindIII	AAGCTT	1 cut(s)	1428
HinfI	GANTC	5 cut(s)	973, 1159, 1288, 1393, 1609
HpaII	CCGG	9 cut(s)	188, 274, 309, 327, 352, 366, 842, 1367, 1694
HphI	GGTGA	5 cut(s)	133, 595, 1297, 1327, 1783
Hpy166II	GTNNAC	4 cut(s)	34, 436, 963, 1152
Hpy188I	TCNGA	2 cut(s)	18, 1164
Hpy188III	TCNNGA	4 cut(s)	176, 521, 1193, 1807
Hpy8I	GTNNAC	4 cut(s)	34, 436, 963, 1152
Hpy99I	CGWCG	3 cut(s)	236, 317, 365
HpyAV	CCTTC	9 cut(s)	913, 928, 1195, 1316, 1475, 1489, 1762, 1855, 1866
HpyCH4III	ACNGT	5 cut(s)	535, 970, 1285, 1487, 1620
HpyCH4IV	ACGT	2 cut(s)	234, 1587
HpyCH4V	TGCA	8 cut(s)	817, 1177, 1257, 1302, 1560, 1595, 1616, 1787
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 988, 1656
HpyF3I	CTNAG	3 cut(s)	458, 882, 1755
HpySE526I	ACGT	2 cut(s)	234, 1587
Hsp92I	GRCGYC	3 cut(s)	312, 363, 480
HspAI	GCGC	3 cut(s)	322, 480, 980
KasI	GGCGCC	1 cut(s)	479
KflI	GGGWCCC	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	1491
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	7 cut(s)	24, 152, 447, 1264, 1422, 1758, 1797
LmnI	GCTCC	2 cut(s)	329, 523
Lsp1109I	GCAGC	4 cut(s)	415, 418, 1738, 1771
LweI	GCATC	3 cut(s)	546, 655, 892
MaeI	CTAG	3 cut(s)	738, 1532, 1905
MaeII	ACGT	2 cut(s)	234, 1587
MaeIII	GTNAC	3 cut(s)	425, 1060, 1564
MalI	GATC	7 cut(s)	26, 154, 449, 1266, 1424, 1760, 1799
MboI	GATC	7 cut(s)	24, 152, 447, 1264, 1422, 1758, 1797
MhlI	GDGCHC	5 cut(s)	294, 493, 606, 948, 1888
Mly113I	GGCGCC	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	1168
Mph1103I	ATGCAT	1 cut(s)	1597
MroXI	GAANNNNTTC	1 cut(s)	1326
MseI	TTAA	7 cut(s)	332, 1229, 1502, 1517, 1584, 1724, 1851
MslI	CAYNNNNRTG	1 cut(s)	851
MspI	CCGG	9 cut(s)	188, 274, 309, 327, 352, 366, 842, 1367, 1694
MspR9I	CCNGG	6 cut(s)	188, 189, 274, 275, 1211, 1368
Mva1269I	GAATGC	1 cut(s)	1513
MvaI	CCWGG	1 cut(s)	1211
MvnI	CGCG	1 cut(s)	1824
MwoI	GCNNNNNNNGC	3 cut(s)	488, 988, 1656
NarI	GGCGCC	1 cut(s)	480
NciI	CCSGG	5 cut(s)	188, 189, 274, 275, 1368
NdeII	GATC	7 cut(s)	24, 152, 447, 1264, 1422, 1758, 1797
NlaIV	GGNNCC	5 cut(s)	192, 278, 279, 481, 1489
NmeAIII	GCCGAG	1 cut(s)	1182
NmuCI	GTSAC	1 cut(s)	1564
NsiI	ATGCAT	1 cut(s)	1597
NspI	RCATGY	3 cut(s)	809, 1261, 1637
PaeI	GCATGC	1 cut(s)	1261
PagI	TCATGA	1 cut(s)	1192
PceI	AGGCCT	1 cut(s)	1464
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 1885
PctI	GAATGC	1 cut(s)	1513
PdmI	GAANNNNTTC	1 cut(s)	1326
PfeI	GAWTC	4 cut(s)	973, 1288, 1393, 1609
PinAI	ACCGGT	1 cut(s)	351
PleI	GAGTC	1 cut(s)	1167
PluTI	GGCGCC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	1167
PpuMI	RGGWCCY	1 cut(s)	277
PshBI	ATTAAT	1 cut(s)	1229
PsiI	TTATAA	1 cut(s)	1737
Psp124BI	GAGCTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	1209
PspFI	CCCAGC	2 cut(s)	887, 1355
PspGI	CCWGG	1 cut(s)	1209
PspN4I	GGNNCC	5 cut(s)	192, 278, 279, 481, 1489
PspPI	GGNCC	5 cut(s)	169, 191, 277, 396, 1475
PspPPI	RGGWCCY	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	1789
RsaI	GTAC	5 cut(s)	380, 437, 623, 1140, 1489
RsaNI	GTAC	5 cut(s)	379, 436, 622, 1139, 1488
RseI	CAYNNNNRTG	1 cut(s)	851
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	7 cut(s)	332, 1229, 1502, 1517, 1584, 1724, 1851
Sau3AI	GATC	7 cut(s)	24, 152, 447, 1264, 1422, 1758, 1797
Sau96I	GGNCC	5 cut(s)	169, 191, 277, 396, 1475
SchI	GAGTC	1 cut(s)	1168
ScrFI	CCNGG	6 cut(s)	188, 189, 274, 275, 1211, 1368
SduI	GDGCHC	5 cut(s)	294, 493, 606, 948, 1888
SfaNI	GCATC	3 cut(s)	546, 655, 892
SfcI	CTRYAG	2 cut(s)	34, 1785
SfoI	GGCGCC	1 cut(s)	481
SinI	GGWCC	3 cut(s)	169, 191, 277
SmaI	CCCGGG	2 cut(s)	189, 275
SmiMI	CAYNNNNRTG	1 cut(s)	851
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
SphI	GCATGC	1 cut(s)	1261
SseBI	AGGCCT	1 cut(s)	1464
SspDI	GGCGCC	1 cut(s)	479
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	3 cut(s)	738, 1532, 1905
SstI	GAGCTC	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	1464
StyD4I	CCNGG	6 cut(s)	186, 187, 272, 273, 1209, 1366
StyI	CCWWGG	1 cut(s)	1569
TaaI	ACNGT	5 cut(s)	535, 970, 1285, 1487, 1620
TaiI	ACGT	2 cut(s)	237, 1590
TaqI	TCGA	6 cut(s)	23, 177, 606, 837, 1425, 1888
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	6 cut(s)	230, 360, 472, 562, 701, 956
TfiI	GAWTC	4 cut(s)	973, 1288, 1393, 1609
Tru1I	TTAA	7 cut(s)	332, 1229, 1502, 1517, 1584, 1724, 1851
Tru9I	TTAA	7 cut(s)	332, 1229, 1502, 1517, 1584, 1724, 1851
TscAI	CASTG	3 cut(s)	221, 600, 1623
TseFI	GTSAC	1 cut(s)	1564
TseI	GCWGC	4 cut(s)	403, 406, 1751, 1784
Tsp45I	GTSAC	1 cut(s)	1564
TspDTI	ATGAA	5 cut(s)	624, 1356, 1385, 1520, 1601
TspGWI	ACGGA	2 cut(s)	161, 1894
TspMI	CCCGGG	2 cut(s)	187, 273
TspRI	CASTG	3 cut(s)	221, 600, 1623
VpaK11BI	GGWCC	3 cut(s)	169, 191, 277
VspI	ATTAAT	1 cut(s)	1229
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	3 cut(s)	809, 1261, 1637
XmaI	CCCGGG	2 cut(s)	187, 273
XmiI	GTMKAC	2 cut(s)	33, 962
XmnI	GAANNNNTTC	1 cut(s)	1326
XspI	CTAG	3 cut(s)	738, 1532, 1905
Zsp2I	ATGCAT	1 cut(s)	1597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.