Rroxscaffold_2G00128520
BZIP Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
64314831 .. 64321535
6705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128520.1

Sequence Viewer

Length: 1092 bp
ATGAACTCTTCTTCCACCCAGTTTGTGACCTCTAGAAGGATGAGTGCCTATGAGCCAATACACCAGATGAGCATGTGGGGAGAAAGCTTTATGAGTAATGGTAATTTGAATGCCTCAGCATCCATCATCATGGATGCAGACACACAGCTAGATAATCAGTCAGAGGATGCCTCTCAAGGAATCCTGGGACCTTCGAGCAAGTATGACCAAGAAGCAACCAAACCTACGGACAAGGTCCAAAGGCGTCTTGCTCAAAATCGGGAGGCTGCTCGTAAAAGCCGGATGAGAAAGAAGGCCTATGTTCAGCAGTTGGAAACAAGTCGTTTAAAGCTCGTTCAATTAGAGCAAGAGCTTGATAGAGCAAGACAACAGGGTCTTTATATTGGAAGTGGACTGGATGCTAGTCCTCTGGGATATTCTGGCACCATGAACCCAGGTTGTGTTGCTGCATTTGAGATGGAGTATGGAAACTGGGTGGAGGAACAAAATAAGCAGATGTCTGAACTGAGGACTGCGTTGCAGGCTCAGATAAGTGACACAGAGCTTGATCTCCTTGTAGATCGCGGCATGAGTCACTATTTTAAACTTTTCAGCATGAAATCAAAAGCTGCAAAAGTTGATGTTTTCTATGTAATGTCTGGGATGTGGAAAACATCAGCTGAGCGGTTTTTCTCGTGGATTGGAGGATTTCGCCCTTCAGAGCTTCTTAAGGTTCTTCTGCCTCAACTTTACCCCTTGGCAGAGCAACAACATTTGGATGTTAGCAGCCTTAGGCAATCATGTCAACAAGCAGAAGATGCTCTTTCGCAAGGTATGGATAAACTACAGCTCACTCTAGCTCAGACTGTGGCAGCTGATCCTCTGGTTGAAGGTATTTATGTCTCACAGATGGCCATTGCAATGGAGAAGTTGGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGATCATCTTCGAAGGGAGACGTTACAGCAGATGTCACGCATCCTCACTATCCGCCAGGCAGCTCGAGGCCTTCTTGCTTTGGGAGAGTACTTCCAACGCCTTCGAGCTTTGAGCTCACTTTGGACAACTCGTCCTCGTGAGCTTACATAA

Protein Analysis

363

Amino Acids

41.0

Weight (kDa)

6.93

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 76 - 116 5e-08 bZIP transcription factor
DOG1 PF14144 165 - 240 1.9e-30 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 664
AccII CGCG 1 cut(s) 564
AciI CCGC 3 cut(s) 564, 664, 994
AclWI GGATC 1 cut(s) 851
AcoI YGGCCR 1 cut(s) 891
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 1 cut(s) 1031
AfiI CCNNNNNNNGG 1 cut(s) 36
AflII CTTAAG 1 cut(s) 707
AgsI TTSAA 3 cut(s) 109, 338, 869
AhdI GACNNNNNGTC 1 cut(s) 1071
AjnI CCWGG 4 cut(s) 183, 433, 936, 996
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 1058
Alw26I GTCTC 2 cut(s) 886, 953
AlwI GGATC 1 cut(s) 851
Ama87I CYCGRG 1 cut(s) 1005
AoxI GGCC 3 cut(s) 294, 891, 1009
ApeKI GCWGC 6 cut(s) 266, 446, 608, 765, 851, 1001
AspS9I GGNCC 2 cut(s) 188, 235
AsuII TTCGAA 1 cut(s) 952
AvaI CYCGRG 1 cut(s) 1005
AvaII GGWCC 2 cut(s) 188, 235
AxyI CCTNAGG 1 cut(s) 770
BalI TGGCCA 1 cut(s) 893
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 1058
BauI CACGAG 2 cut(s) 673, 1077
Bbv12I GWGCWC 1 cut(s) 1058
BbvCI CCTCAGC 1 cut(s) 115
BbvI GCAGC 6 cut(s) 253, 433, 595, 777, 863, 1013
BccI CCATC 3 cut(s) 131, 451, 883
BciT130I CCWGG 4 cut(s) 185, 435, 938, 998
BclI TGATCA 1 cut(s) 943
BcoDI GTCTC 2 cut(s) 886, 953
BfaI CTAG 4 cut(s) 33, 149, 402, 836
BfmI CTRYAG 1 cut(s) 824
BfrI CTTAAG 1 cut(s) 707
BisI GCNGC 7 cut(s) 267, 447, 565, 609, 766, 852, 1002
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 7 cut(s) 268, 448, 566, 610, 767, 853, 1003
BmcAI AGTACT 1 cut(s) 1031
Bme1390I CCNGG 4 cut(s) 185, 435, 938, 998
Bme18I GGWCC 2 cut(s) 188, 235
BmeRI GACNNNNNGTC 1 cut(s) 1071
BmeT110I CYCGRG 1 cut(s) 1005
BmgT120I GGNCC 2 cut(s) 188, 235
BmiI GGNNCC 2 cut(s) 189, 424
BmrFI CCNGG 4 cut(s) 185, 435, 938, 998
BmrI ACTGGG 2 cut(s) 13, 481
BmsI GCATC 6 cut(s) 124, 128, 157, 388, 787, 990
BmuI ACTGGG 2 cut(s) 13, 481
BplI GAGNNNNNCTC 2 cut(s) 155, 187
Bpu10I CCTNAGC 1 cut(s) 115
Bpu1102I GCTNAGC 1 cut(s) 660
Bpu14I TTCGAA 1 cut(s) 952
BpuEI CTTGAG 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 3 cut(s) 184, 433, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 3 cut(s) 19, 399, 476
Bse21I CCTNAGG 1 cut(s) 770
Bse3DI GCAATG 2 cut(s) 894, 906
BseBI CCWGG 4 cut(s) 185, 435, 938, 998
BseDI CCNNGG 3 cut(s) 184, 433, 735
BseGI GGATG 9 cut(s) 45, 119, 139, 172, 288, 403, 648, 763, 981
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMI GCAATG 2 cut(s) 894, 906
BseMII CTCAG 5 cut(s) 129, 497, 539, 651, 854
BseNI ACTGG 3 cut(s) 19, 399, 476
BseXI GCAGC 6 cut(s) 253, 433, 595, 777, 863, 1013
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 296, 893, 1011
BshNI GGYRCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 1058
BsiHKCI CYCGRG 1 cut(s) 1005
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 886, 953
BsmBI CGTCTC 1 cut(s) 953
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 3 cut(s) 296, 893, 1011
BsoBI CYCGRG 1 cut(s) 1005
Bsp119I TTCGAA 1 cut(s) 952
Bsp1286I GDGCHC 1 cut(s) 1058
Bsp143I GATC 4 cut(s) 547, 559, 856, 943
Bsp1720I GCTNAGC 1 cut(s) 660
BspACI CCGC 3 cut(s) 564, 664, 994
BspANI GGCC 3 cut(s) 296, 893, 1011
BspCNI CTCAG 5 cut(s) 128, 498, 538, 652, 853
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 2 cut(s) 189, 424
BspPI GGATC 1 cut(s) 851
BspT104I TTCGAA 1 cut(s) 952
BspT107I GGYRCC 1 cut(s) 422
BspTI CTTAAG 1 cut(s) 707
BsrBI CCGCTC 1 cut(s) 664
BsrDI GCAATG 2 cut(s) 894, 906
BsrI ACTGG 3 cut(s) 19, 399, 476
BssECI CCNNGG 3 cut(s) 184, 433, 735
BssMI GATC 4 cut(s) 547, 559, 856, 943
BssNI GRCGYC 1 cut(s) 244
BssSI CACGAG 2 cut(s) 673, 1077
BssT1I CCWWGG 1 cut(s) 735
Bst2BI CACGAG 2 cut(s) 673, 1077
Bst2UI CCWGG 4 cut(s) 185, 435, 938, 998
Bst4CI ACNGT 1 cut(s) 847
Bst6I CTCTTC 1 cut(s) 13
BstACI GRCGYC 1 cut(s) 244
BstAFI CTTAAG 1 cut(s) 707
BstAPI GCANNNNNTGC 1 cut(s) 797
BstBI TTCGAA 1 cut(s) 952
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 6 cut(s) 115, 506, 525, 660, 770, 840
BstENI CCTNNNNNAGG 1 cut(s) 34
BstF5I GGATG 9 cut(s) 45, 119, 139, 172, 288, 403, 648, 763, 981
BstFNI CGCG 1 cut(s) 564
BstKTI GATC 4 cut(s) 550, 562, 859, 946
BstMAI GTCTC 2 cut(s) 886, 953
BstMBI GATC 4 cut(s) 547, 559, 856, 943
BstMWI GCNNNNNNNGC 2 cut(s) 521, 797
BstNI CCWGG 4 cut(s) 185, 435, 938, 998
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 4 cut(s) 183, 433, 936, 996
BstSFI CTRYAG 1 cut(s) 824
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 6 cut(s) 253, 433, 595, 777, 863, 1013
BstXI CCANNNNNNTGG 2 cut(s) 130, 901
Bsu36I CCTNAGG 1 cut(s) 770
BsuRI GGCC 3 cut(s) 296, 893, 1011
BtsCI GGATG 9 cut(s) 45, 119, 139, 172, 288, 403, 648, 763, 981
Cac8I GCNNGC 1 cut(s) 522
Cfr13I GGNCC 2 cut(s) 188, 235
CseI GACGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 1030
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 6 cut(s) 73, 130, 427, 568, 595, 780
CviQI GTAC 1 cut(s) 1030
DdeI CTNAG 6 cut(s) 115, 506, 525, 660, 770, 840
DpnI GATC 4 cut(s) 549, 561, 858, 945
DpnII GATC 4 cut(s) 547, 559, 856, 943
DraI TTTAAA 2 cut(s) 327, 583
DrdI GACNNNNNNGTC 1 cut(s) 372
DriI GACNNNNNGTC 1 cut(s) 1071
DseDI GACNNNNNNGTC 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 891
Eam1104I CTCTTC 1 cut(s) 13
Eam1105I GACNNNNNGTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 13
EciI GGCGGA 1 cut(s) 983
Ecl136II GAGCTC 1 cut(s) 1056
Eco130I CCWWGG 1 cut(s) 735
Eco147I AGGCCT 2 cut(s) 296, 1011
Eco24I GRGCYC 1 cut(s) 1058
Eco47I GGWCC 2 cut(s) 188, 235
Eco53kI GAGCTC 1 cut(s) 1056
Eco57I CTGAAG 1 cut(s) 681
Eco81I CCTNAGG 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 1005
EcoICRI GAGCTC 1 cut(s) 1056
EcoNI CCTNNNNNAGG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 4 cut(s) 183, 433, 936, 996
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 1058
ErhI CCWWGG 1 cut(s) 735
Esp3I CGTCTC 1 cut(s) 953
FaeI CATG 6 cut(s) 76, 133, 430, 571, 598, 783
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FaqI GGGAC 1 cut(s) 201
FatI CATG 6 cut(s) 72, 129, 426, 567, 594, 779
FbaI TGATCA 1 cut(s) 943
Fnu4HI GCNGC 7 cut(s) 267, 447, 565, 609, 766, 852, 1002
FokI GGATG 9 cut(s) 52, 106, 146, 179, 295, 410, 655, 770, 968
FriOI GRGCYC 1 cut(s) 1058
Fsp4HI GCNGC 7 cut(s) 267, 447, 565, 609, 766, 852, 1002
FspBI CTAG 4 cut(s) 33, 149, 402, 836
GluI GCNGC 7 cut(s) 267, 447, 565, 609, 766, 852, 1002
HaeIII GGCC 3 cut(s) 296, 893, 1011
HapII CCGG 1 cut(s) 280
HgaI GACGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 6 cut(s) 76, 133, 430, 571, 598, 783
HincII GTYRAC 1 cut(s) 785
HindII GTYRAC 1 cut(s) 785
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 180, 571
HpaII CCGG 1 cut(s) 280
Hpy166II GTNNAC 3 cut(s) 392, 785, 934
Hpy188I TCNGA 5 cut(s) 163, 502, 528, 700, 843
Hpy188III TCNNGA 3 cut(s) 33, 260, 1079
Hpy8I GTNNAC 3 cut(s) 392, 785, 934
HpyAV CCTTC 8 cut(s) 30, 201, 286, 705, 863, 948, 1022, 1052
HpyCH4III ACNGT 1 cut(s) 847
HpyCH4IV ACGT 1 cut(s) 962
HpyCH4V TGCA 5 cut(s) 137, 449, 520, 611, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 797
HpyF3I CTNAG 6 cut(s) 115, 506, 525, 660, 770, 840
HpySE526I ACGT 1 cut(s) 962
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 6 cut(s) 76, 133, 430, 571, 598, 783
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 4 cut(s) 547, 559, 856, 943
Lsp1109I GCAGC 6 cut(s) 253, 433, 595, 777, 863, 1013
LweI GCATC 6 cut(s) 124, 128, 157, 388, 787, 990
MaeI CTAG 4 cut(s) 33, 149, 402, 836
MaeII ACGT 1 cut(s) 962
MaeIII GTNAC 5 cut(s) 25, 533, 572, 963, 975
MalI GATC 4 cut(s) 549, 561, 858, 945
MbiI CCGCTC 1 cut(s) 664
MboI GATC 4 cut(s) 547, 559, 856, 943
MboII GAAGA 4 cut(s) 3, 707, 806, 941
MhlI GDGCHC 1 cut(s) 1058
MlsI TGGCCA 1 cut(s) 893
MluCI AATT 2 cut(s) 103, 338
MluNI TGGCCA 1 cut(s) 893
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 3 cut(s) 291, 891, 1060
Mox20I TGGCCA 1 cut(s) 893
MscI TGGCCA 1 cut(s) 893
MseI TTAA 3 cut(s) 326, 582, 708
MslI CAYNNNNRTG 3 cut(s) 128, 756, 899
Msp20I TGGCCA 1 cut(s) 893
MspA1I CMGCKG 2 cut(s) 659, 854
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 4 cut(s) 185, 435, 938, 998
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 4 cut(s) 185, 435, 938, 998
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 2 cut(s) 521, 797
NdeII GATC 4 cut(s) 547, 559, 856, 943
NlaIII CATG 6 cut(s) 76, 133, 430, 571, 598, 783
NlaIV GGNNCC 2 cut(s) 189, 424
NmuCI GTSAC 4 cut(s) 25, 533, 572, 975
NspI RCATGY 1 cut(s) 76
NspV TTCGAA 1 cut(s) 952
PaeR7I CTCGAG 1 cut(s) 1005
PceI AGGCCT 2 cut(s) 296, 1011
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 7 cut(s) 268, 448, 566, 610, 767, 853, 1003
PleI GAGTC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 579
PpuMI RGGWCCY 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 1058
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 4 cut(s) 183, 433, 936, 996
PspGI CCWGG 4 cut(s) 183, 433, 936, 996
PspN4I GGNNCC 2 cut(s) 189, 424
PspPI GGNCC 2 cut(s) 188, 235
PspPPI RGGWCCY 1 cut(s) 188
PspXI VCTCGAGB 1 cut(s) 1005
PsyI GACNNNGTC 1 cut(s) 233
PvuII CAGCTG 2 cut(s) 659, 854
RsaI GTAC 1 cut(s) 1031
RsaNI GTAC 1 cut(s) 1030
RseI CAYNNNNRTG 3 cut(s) 128, 756, 899
SacI GAGCTC 1 cut(s) 1058
SaqAI TTAA 3 cut(s) 326, 582, 708
SatI GCNGC 7 cut(s) 267, 447, 565, 609, 766, 852, 1002
Sau3AI GATC 4 cut(s) 547, 559, 856, 943
Sau96I GGNCC 2 cut(s) 188, 235
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 4 cut(s) 185, 435, 938, 998
SduI GDGCHC 1 cut(s) 1058
SfaNI GCATC 6 cut(s) 124, 128, 157, 388, 787, 990
SfcI CTRYAG 1 cut(s) 824
Sfr274I CTCGAG 1 cut(s) 1005
SfuI TTCGAA 1 cut(s) 952
SinI GGWCC 2 cut(s) 188, 235
SlaI CTCGAG 1 cut(s) 1005
SmiMI CAYNNNNRTG 3 cut(s) 128, 756, 899
SmlI CTYRAG 3 cut(s) 174, 707, 1005
SmoI CTYRAG 3 cut(s) 174, 707, 1005
Sse9I AATT 2 cut(s) 103, 338
SseBI AGGCCT 2 cut(s) 296, 1011
SsiI CCGC 3 cut(s) 564, 664, 994
SspMI CTAG 4 cut(s) 33, 149, 402, 836
SstI GAGCTC 1 cut(s) 1058
StuI AGGCCT 2 cut(s) 296, 1011
StyD4I CCNGG 4 cut(s) 183, 433, 936, 996
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 1 cut(s) 847
TaiI ACGT 1 cut(s) 965
TaqI TCGA 4 cut(s) 194, 952, 1006, 1045
TasI AATT 2 cut(s) 103, 338
TatI WGTACW 1 cut(s) 1029
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 3 cut(s) 326, 582, 708
Tru9I TTAA 3 cut(s) 326, 582, 708
TseFI GTSAC 4 cut(s) 25, 533, 572, 975
TseI GCWGC 6 cut(s) 266, 446, 608, 765, 851, 1001
Tsp45I GTSAC 4 cut(s) 25, 533, 572, 975
TspDTI ATGAA 3 cut(s) 17, 443, 611
TspGWI ACGGA 1 cut(s) 242
Tth111I GACNNNGTC 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 2 cut(s) 188, 235
XagI CCTNNNNNAGG 1 cut(s) 34
XbaI TCTAGA 1 cut(s) 32
XceI RCATGY 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 1005
XspI CTAG 4 cut(s) 33, 149, 402, 836
ZrmI AGTACT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.