Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002995

Physical Location & Seq

Genomic Coordinates Forward (+)

28966866 .. 28973885

Gene Structure 7020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG268900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAACTCTTCTTCCACCCAGTTTGTCACCTCTAGAAGGATGAGTGCCTATGAGCCAATACACCAGATGAGCATGTGGGGAGAAAGCTTTATGAGTAATGGTAATTTGAATGCCTCAGCATCCATGATCATGGATGCAGACACACAGCTAGATAATCAGTCAGAGGATGCCTCTCAAGGAATCCTGGGACCTTCGAGCAAGTATGACCAAGAAGCAACCAAACCTACGGACAAGGTCCAAAGGCGTCTTGCTCAAAATCGGGAGGCTGCTCGTAAAAGCCGGCTGAGAAAGAAGGCCTATGTTCAGCAGTTGGAAACAAGTCGTTTAAAGCTTGTTCAATTAGAGCAAGAGCTTGATAGAGCAAGACAACAGGGTCTTTATATTGGAAGTGGACTGGATGCTAATCCTCTGGGATATTCTGGCACCATGAACCCAGGTGTTGCTGCATTTGAGATGGAGTATGGAAACTGGGTGGAGGAACAAAATAAGCAGATTTTTGAACTGAGGACTGCGTTGCAGGCTCAGATAAGTGACATAGAGCTTCATCTCCTTGTAGATCGCGGCATGAGTCACTATTTTAAACTTTTCAGCATGAAATCAAAAGCTGCAAAAGTTGATGTTTTCTATGTAATGTCTGGGATGTGGAAAACATCAGCTGAGCGGTTTTTCTCATGGATTGGAGGATTTCGCCCTTCAGAGCTTCTTAAGGTTCTTCTGCCTCAGCTTTACCCCTTGGCAGAGCAACAACATTTGGATGTTAGCAGCCTTAGGCAATCATGTCAACAAGCAGAAGATGCTCTTTCACAAGGTATGGATAAACTACAGCTCACTCTAGCTCAGACTGTGGCAGCTGATCCTCTGGGTGAAAGTATTTATGTCCCACAGATGGCCATTGCAATGGAGAAGTTGGAAGCTCTTGTGAGCTTTGTGAACCAGGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

314

Amino Acids

35.35

Weight (kDa)

5.71

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	76 - 116	1.1e-08	bZIP transcription factor
DOG1	PF14144	165 - 239	1.6e-29	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210
fragaria_vesca	FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900
malus_domestica	MD01G1021600.v1.1 MD15G1330400.v1.1
prunus_persica	Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1
pyrus_communis	pycom01g05010
rosa_chinensis	RchiOBHm_Chr2g0115911
rosa_multiflora	Rmu_ssc0000197.1_g000009
rosa_roxburghii	Rroxscaffold_2G00127690 Rroxscaffold_2G00128520
rosa_rugosa	Rorug02G0200900 Rorug02G0201000 Rorug02G0201100 Rorug02G0201200
rosa_samantha	Rh2BG268900 Rh2CG264400 Rh2DG266100
rosa_wichuraiana	Rw2G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	661
AccII	CGCG	1 cut(s)	561
AciI	CCGC	2 cut(s)	561, 661
AclWI	GGATC	1 cut(s)	848
AcoI	YGGCCR	1 cut(s)	888
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	36, 886
AflII	CTTAAG	1 cut(s)	704
AgsI	TTSAA	3 cut(s)	109, 338, 500
AjnI	CCWGG	3 cut(s)	183, 433, 933
AloI	GAACNNNNNNTCC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	848
AoxI	GGCC	2 cut(s)	294, 888
ApeKI	GCWGC	5 cut(s)	266, 443, 605, 762, 848
AspS9I	GGNCC	2 cut(s)	188, 235
AsuHPI	GGTGA	2 cut(s)	19, 875
AvaII	GGWCC	2 cut(s)	188, 235
AxyI	CCTNAGG	1 cut(s)	767
BalI	TGGCCA	1 cut(s)	890
BanI	GGYRCC	1 cut(s)	422
BbvCI	CCTCAGC	2 cut(s)	115, 720
BbvI	GCAGC	5 cut(s)	253, 430, 592, 774, 860
BccI	CCATC	2 cut(s)	448, 880
BciT130I	CCWGG	3 cut(s)	185, 435, 935
BclI	TGATCA	1 cut(s)	126
BfaI	CTAG	3 cut(s)	33, 149, 833
BfmI	CTRYAG	1 cut(s)	821
BfrI	CTTAAG	1 cut(s)	704
BisI	GCNGC	6 cut(s)	267, 444, 562, 606, 763, 849
BlpI	GCTNAGC	1 cut(s)	657
BlsI	GCNGC	6 cut(s)	268, 445, 563, 607, 764, 850
Bme1390I	CCNGG	3 cut(s)	185, 435, 935
Bme18I	GGWCC	2 cut(s)	188, 235
BmgT120I	GGNCC	2 cut(s)	188, 235
BmiI	GGNNCC	2 cut(s)	189, 424
BmrFI	CCNGG	3 cut(s)	185, 435, 935
BmrI	ACTGGG	2 cut(s)	13, 478
BmsI	GCATC	5 cut(s)	124, 128, 157, 388, 784
BmuI	ACTGGG	2 cut(s)	13, 478
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
Bpu10I	CCTNAGC	2 cut(s)	115, 720
Bpu1102I	GCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	184, 433, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 886
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	3 cut(s)	19, 399, 473
Bse21I	CCTNAGG	1 cut(s)	767
Bse3DI	GCAATG	2 cut(s)	891, 903
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	185, 435, 935
BseDI	CCNNGG	3 cut(s)	184, 433, 732
BseGI	GGATG	7 cut(s)	45, 119, 139, 172, 403, 645, 760
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	36, 886
BseMI	GCAATG	2 cut(s)	891, 903
BseMII	CTCAG	7 cut(s)	129, 275, 494, 536, 648, 734, 851
BseNI	ACTGG	3 cut(s)	19, 399, 473
BseXI	GCAGC	5 cut(s)	253, 430, 592, 774, 860
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	296, 890
BshNI	GGYRCC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	2 cut(s)	201, 863
BslI	CCNNNNNNNGG	2 cut(s)	36, 886
BsmFI	GGGAC	2 cut(s)	201, 863
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	296, 890
Bsp143I	GATC	3 cut(s)	126, 556, 853
Bsp1720I	GCTNAGC	1 cut(s)	657
BspACI	CCGC	2 cut(s)	561, 661
BspANI	GGCC	2 cut(s)	296, 890
BspCNI	CTCAG	7 cut(s)	128, 276, 495, 535, 649, 733, 850
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	189, 424
BspPI	GGATC	1 cut(s)	848
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	661
BsrDI	GCAATG	2 cut(s)	891, 903
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	19, 399, 473
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	184, 433, 732
BssMI	GATC	3 cut(s)	126, 556, 853
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	3 cut(s)	185, 435, 935
Bst4CI	ACNGT	1 cut(s)	844
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	244
BstAFI	CTTAAG	1 cut(s)	704
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	281, 519
BstDEI	CTNAG	8 cut(s)	115, 284, 503, 522, 657, 720, 767, 837
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	7 cut(s)	45, 119, 139, 172, 403, 645, 760
BstFNI	CGCG	1 cut(s)	561
BstKTI	GATC	3 cut(s)	129, 559, 856
BstMBI	GATC	3 cut(s)	126, 556, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 794
BstNI	CCWGG	3 cut(s)	185, 435, 935
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	3 cut(s)	183, 433, 933
BstSFI	CTRYAG	1 cut(s)	821
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	5 cut(s)	253, 430, 592, 774, 860
BstXI	CCANNNNNNTGG	2 cut(s)	130, 898
Bsu36I	CCTNAGG	1 cut(s)	767
BsuRI	GGCC	2 cut(s)	296, 890
BtsCI	GGATG	7 cut(s)	45, 119, 139, 172, 403, 645, 760
Cac8I	GCNNGC	2 cut(s)	281, 519
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	188, 235
CseI	GACGC	1 cut(s)	233
CsiI	ACCWGGT	1 cut(s)	933
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	8 cut(s)	73, 124, 130, 427, 565, 592, 672, 777
DdeI	CTNAG	8 cut(s)	115, 284, 503, 522, 657, 720, 767, 837
DpnI	GATC	3 cut(s)	128, 558, 855
DpnII	GATC	3 cut(s)	126, 556, 853
DraI	TTTAAA	2 cut(s)	327, 580
DrdI	GACNNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	732
Eco147I	AGGCCT	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	188, 235
Eco57I	CTGAAG	1 cut(s)	678
Eco81I	CCTNAGG	1 cut(s)	767
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	3 cut(s)	183, 433, 933
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	8 cut(s)	76, 127, 133, 430, 568, 595, 675, 780
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	2 cut(s)	201, 863
FatI	CATG	8 cut(s)	72, 123, 129, 426, 564, 591, 671, 776
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	6 cut(s)	267, 444, 562, 606, 763, 849
FokI	GGATG	7 cut(s)	52, 106, 146, 179, 410, 652, 767
Fsp4HI	GCNGC	6 cut(s)	267, 444, 562, 606, 763, 849
FspBI	CTAG	3 cut(s)	33, 149, 833
GluI	GCNGC	6 cut(s)	267, 444, 562, 606, 763, 849
HaeIII	GGCC	2 cut(s)	296, 890
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	8 cut(s)	76, 127, 133, 430, 568, 595, 675, 780
HincII	GTYRAC	1 cut(s)	782
HindII	GTYRAC	1 cut(s)	782
HindIII	AAGCTT	2 cut(s)	85, 329
HinfI	GANTC	2 cut(s)	180, 568
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	19, 875
Hpy166II	GTNNAC	3 cut(s)	392, 782, 931
Hpy188I	TCNGA	4 cut(s)	163, 525, 697, 840
Hpy188III	TCNNGA	2 cut(s)	33, 260
Hpy8I	GTNNAC	3 cut(s)	392, 782, 931
HpyAV	CCTTC	4 cut(s)	30, 201, 286, 702
HpyCH4III	ACNGT	1 cut(s)	844
HpyCH4V	TGCA	5 cut(s)	137, 446, 517, 608, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 794
HpyF3I	CTNAG	8 cut(s)	115, 284, 503, 522, 657, 720, 767, 837
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	8 cut(s)	76, 127, 133, 430, 568, 595, 675, 780
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	126, 556, 853
Lsp1109I	GCAGC	5 cut(s)	253, 430, 592, 774, 860
LweI	GCATC	5 cut(s)	124, 128, 157, 388, 784
MabI	ACCWGGT	1 cut(s)	933
MaeI	CTAG	3 cut(s)	33, 149, 833
MaeIII	GTNAC	3 cut(s)	25, 530, 569
MalI	GATC	3 cut(s)	128, 558, 855
MbiI	CCGCTC	1 cut(s)	661
MboI	GATC	3 cut(s)	126, 556, 853
MboII	GAAGA	3 cut(s)	3, 704, 803
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	2 cut(s)	103, 338
MluNI	TGGCCA	1 cut(s)	890
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	2 cut(s)	291, 888
Mox20I	TGGCCA	1 cut(s)	890
MroNI	GCCGGC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	3 cut(s)	326, 579, 705
MslI	CAYNNNNRTG	3 cut(s)	128, 753, 896
Msp20I	TGGCCA	1 cut(s)	890
MspA1I	CMGCKG	2 cut(s)	656, 851
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	3 cut(s)	185, 435, 935
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	3 cut(s)	185, 435, 935
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	2 cut(s)	518, 794
NaeI	GCCGGC	1 cut(s)	281
NdeII	GATC	3 cut(s)	126, 556, 853
NgoMIV	GCCGGC	1 cut(s)	279
NlaIII	CATG	8 cut(s)	76, 127, 133, 430, 568, 595, 675, 780
NlaIV	GGNNCC	2 cut(s)	189, 424
NmuCI	GTSAC	3 cut(s)	25, 530, 569
NspI	RCATGY	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	296
PctI	GAATGC	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	180
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	6 cut(s)	268, 445, 563, 607, 764, 850
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
PpuMI	RGGWCCY	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	3 cut(s)	183, 433, 933
PspGI	CCWGG	3 cut(s)	183, 433, 933
PspN4I	GGNNCC	2 cut(s)	189, 424
PspPI	GGNCC	2 cut(s)	188, 235
PspPPI	RGGWCCY	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	233
PvuII	CAGCTG	2 cut(s)	656, 851
RseI	CAYNNNNRTG	3 cut(s)	128, 753, 896
SaqAI	TTAA	3 cut(s)	326, 579, 705
SatI	GCNGC	6 cut(s)	267, 444, 562, 606, 763, 849
Sau3AI	GATC	3 cut(s)	126, 556, 853
Sau96I	GGNCC	2 cut(s)	188, 235
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	3 cut(s)	185, 435, 935
SexAI	ACCWGGT	1 cut(s)	933
SfaNI	GCATC	5 cut(s)	124, 128, 157, 388, 784
SfcI	CTRYAG	1 cut(s)	821
SinI	GGWCC	2 cut(s)	188, 235
SmiMI	CAYNNNNRTG	3 cut(s)	128, 753, 896
SmlI	CTYRAG	2 cut(s)	174, 704
SmoI	CTYRAG	2 cut(s)	174, 704
Sse9I	AATT	2 cut(s)	103, 338
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	2 cut(s)	561, 661
SspMI	CTAG	3 cut(s)	33, 149, 833
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	183, 433, 933
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	844
TaqI	TCGA	1 cut(s)	194
TasI	AATT	2 cut(s)	103, 338
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	3 cut(s)	326, 579, 705
Tru9I	TTAA	3 cut(s)	326, 579, 705
TseFI	GTSAC	3 cut(s)	25, 530, 569
TseI	GCWGC	5 cut(s)	266, 443, 605, 762, 848
Tsp45I	GTSAC	3 cut(s)	25, 530, 569
TspDTI	ATGAA	4 cut(s)	17, 443, 533, 608
TspGWI	ACGGA	1 cut(s)	242
Tth111I	GACNNNGTC	1 cut(s)	233
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	188, 235
XagI	CCTNNNNNAGG	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	3 cut(s)	33, 149, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.