Rorug02G0201000
BZIP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002995
Physical Location & Seq
Forward (+)
18803765 .. 18807516
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0201000.1

Sequence Viewer

Length: 1005 bp
ATGCTGATGACAATGGTGGTCTGCACCTTCTTTGCCTCTATGTTAGGTTTCCTTCTCTGTGTTCTCCGTCGCCGCGATTATGGTAATGCCATAGCCAAAGACAAGGAAAAGTTAAAAGGCAAGTATCATGATTCAGAAGAATGCGTGAAGGGCTCCAGCACAGACGTAATCATCGTTGGTGCCGGTGTTGCTGGCGCTGCTCTTGCGCGCCCACACTCTTGGCAAGTGTACAGCTGGAGCAAGGTACAGTCACATCCCTGCTTGAAGAAAATGGAACAATTAAGGGGGTTCCAATTATACAAAAATAAGGATGGTCAAGCATTTAGGCATTTAAATCTCATGCTGCTCTTACCATTGTTTGTGATGGTTGCTCTTCAAATCTGCGCCGTACTCTTTGCAAGTCTCAGCCAGCATCACAAGAATTCTGAGTTACCATTCAATTATCTTGCACTAGTAGAAGTGCACTCTTGTTTTGTGGGATTAGTTTTGGATAACTGTGAACTACCATTTGCAAATCACGGGCATGTTATAATAGCCGATCCATCTCCTATCGTGTTTTATCCAACCAGTAGTACAGAGTTCCGTTGTTTGGTTGATGTGCCTGGCCAAAAAGTACCTCCCATTGCTAATGGTGAAATGGCCAAGTATTTGAAGAATGTGCTTCCGCCTCAGCTTCATGATGCTTTCATATTCGCTATTGACAAAGGAAATATTAGAACTATGCCGAATAGAAGCATGCCAGCCAATCCACAGCCTACTTCCGGAGCTCTTCTAATCGGTGATGCTTTCAATATGCGTCATGCTTTCACTGGTGGAGGAATGACTGTGGCACTGTCTGACATTGTTGTATTGAGGGATCTTCTTAAGCCATTGCATGACCTAAACGATGCATCTTCATTATGCAAATACCTAGAATCCTTTTATACCTTACGCAAGCCAATTGCTTGTACAATAAATACCTTGGCATGCAGAAGCCCTGTACAAGGTGTTCTCAGACTCTCCTGA

Protein Analysis

334

Amino Acids

36.93

Weight (kDa)

8.91

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SE PF08491 152 - 322 4e-65 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 2 cut(s) 75, 208
AccIII TCCGGA 1 cut(s) 761
AciI CCGC 2 cut(s) 73, 665
AclWI GGATC 2 cut(s) 533, 864
AcoI YGGCCR 2 cut(s) 604, 639
AcsI RAATTY 1 cut(s) 421
AfaI GTAC 7 cut(s) 230, 246, 390, 574, 615, 949, 981
AfiI CCNNNNNNNGG 3 cut(s) 589, 761, 983
AflII CTTAAG 1 cut(s) 863
AgsI TTSAA 5 cut(s) 265, 377, 439, 652, 790
AhlI ACTAGT 1 cut(s) 451
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 3 cut(s) 234, 673, 767
AluI AGCT 3 cut(s) 234, 673, 767
Alw21I GWGCWC 2 cut(s) 465, 769
Alw26I GTCTC 1 cut(s) 407
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 2 cut(s) 533, 864
Aor13HI TCCGGA 1 cut(s) 761
AoxI GGCC 2 cut(s) 604, 639
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 2 cut(s) 197, 343
ApoI RAATTY 1 cut(s) 421
AspLEI GCGC 4 cut(s) 197, 208, 210, 386
AsuHPI GGTGA 2 cut(s) 644, 791
BaeGI GKGCMC 1 cut(s) 465
BalI TGGCCA 2 cut(s) 606, 641
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 2 cut(s) 155, 769
Bbv12I GWGCWC 2 cut(s) 465, 769
BbvCI CCTCAGC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 184, 330
BccI CCATC 3 cut(s) 305, 358, 550
BceAI ACGGC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 407
BcuI ACTAGT 1 cut(s) 451
BfaI CTAG 2 cut(s) 452, 911
BfoI RGCGCY 1 cut(s) 198
BfrI CTTAAG 1 cut(s) 863
BisI GCNGC 3 cut(s) 73, 198, 344
BlsI GCNGC 3 cut(s) 74, 199, 345
Bme1390I CCNGG 1 cut(s) 603
BmiI GGNNCC 3 cut(s) 154, 181, 290
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 5 cut(s) 421, 670, 772, 877, 899
BpmI CTGGAG 2 cut(s) 139, 256
Bpu10I CCTNAGC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 960
BsaWI WCCGGW 1 cut(s) 761
Bsc4I CCNNNNNNNGG 3 cut(s) 589, 761, 983
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 567, 814
Bse3DI GCAATG 2 cut(s) 621, 869
BseAI TCCGGA 1 cut(s) 761
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 960
BseGI GGATG 2 cut(s) 253, 316
BseLI CCNNNNNNNGG 3 cut(s) 589, 761, 983
BseMI GCAATG 2 cut(s) 621, 869
BseMII CTCAG 3 cut(s) 417, 418, 683
BseNI ACTGG 2 cut(s) 567, 814
BsePI GCGCGC 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 2 cut(s) 184, 330
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 2 cut(s) 75, 208
BshFI GGCC 2 cut(s) 606, 641
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 2 cut(s) 465, 769
BsiSI CCGG 2 cut(s) 183, 762
BslI CCNNNNNNNGG 3 cut(s) 589, 761, 983
BsmAI GTCTC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 2 cut(s) 606, 641
Bsp1286I GDGCHC 3 cut(s) 155, 465, 769
Bsp13I TCCGGA 1 cut(s) 761
Bsp1407I TGTACA 3 cut(s) 228, 947, 979
Bsp143I GATC 2 cut(s) 538, 856
BspACI CCGC 2 cut(s) 73, 665
BspANI GGCC 2 cut(s) 606, 641
BspCNI CTCAG 4 cut(s) 417, 418, 682, 1005
BspEI TCCGGA 1 cut(s) 761
BspFNI CGCG 2 cut(s) 75, 208
BspHI TCATGA 2 cut(s) 127, 676
BspLI GGNNCC 3 cut(s) 154, 181, 290
BspPI GGATC 2 cut(s) 533, 864
BspQI GCTCTTC 2 cut(s) 378, 774
BspT107I GGYRCC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 863
BsrDI GCAATG 2 cut(s) 621, 869
BsrFI RCCGGY 1 cut(s) 182
BsrGI TGTACA 3 cut(s) 228, 947, 979
BsrI ACTGG 2 cut(s) 567, 814
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 960
BssHII GCGCGC 1 cut(s) 206
BssMI GATC 2 cut(s) 538, 856
BssT1I CCWWGG 1 cut(s) 960
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 4 cut(s) 249, 497, 826, 834
Bst6I CTCTTC 2 cut(s) 378, 774
BstAFI CTTAAG 1 cut(s) 863
BstAUI TGTACA 3 cut(s) 228, 947, 979
BstC8I GCNNGC 7 cut(s) 193, 208, 410, 737, 741, 935, 967
BstDEI CTNAG 4 cut(s) 404, 426, 669, 992
BstENI CCTNNNNNAGG 1 cut(s) 981
BstF5I GGATG 2 cut(s) 253, 316
BstFNI CGCG 2 cut(s) 75, 208
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 4 cut(s) 197, 208, 210, 386
BstKTI GATC 2 cut(s) 541, 859
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 2 cut(s) 538, 856
BstMWI GCNNNNNNNGC 4 cut(s) 150, 188, 197, 203
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 3 cut(s) 527, 739, 969
BstSCI CCNGG 1 cut(s) 601
BstSLI GKGCMC 1 cut(s) 465
BstUI CGCG 2 cut(s) 75, 208
BstV1I GCAGC 2 cut(s) 184, 330
BstX2I RGATCY 1 cut(s) 856
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 1 cut(s) 856
BsuRI GGCC 2 cut(s) 606, 641
BtsCI GGATG 2 cut(s) 253, 316
BtsIMutI CAGTG 2 cut(s) 807, 830
Cac8I GCNNGC 7 cut(s) 193, 208, 410, 737, 741, 935, 967
CciI TCATGA 2 cut(s) 127, 676
CfoI GCGC 4 cut(s) 197, 208, 210, 386
Cfr10I RCCGGY 1 cut(s) 182
CseI GACGC 1 cut(s) 785
Csp6I GTAC 7 cut(s) 229, 245, 389, 573, 614, 948, 980
CviAII CATG 8 cut(s) 128, 340, 524, 677, 736, 800, 875, 966
CviQI GTAC 7 cut(s) 229, 245, 389, 573, 614, 948, 980
DdeI CTNAG 4 cut(s) 404, 426, 669, 992
DpnI GATC 2 cut(s) 540, 858
DpnII GATC 2 cut(s) 538, 856
DraI TTTAAA 1 cut(s) 333
EaeI YGGCCR 2 cut(s) 604, 639
Eam1104I CTCTTC 2 cut(s) 378, 774
EarI CTCTTC 2 cut(s) 378, 774
EciI GGCGGA 1 cut(s) 654
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 960
Eco24I GRGCYC 2 cut(s) 155, 769
Eco53kI GAGCTC 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 981
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 960
EcoT22I ATGCAT 1 cut(s) 892
EcoT38I GRGCYC 2 cut(s) 155, 769
ErhI CCWWGG 1 cut(s) 960
FaeI CATG 8 cut(s) 131, 343, 527, 680, 739, 803, 878, 969
FatI CATG 8 cut(s) 127, 339, 523, 676, 735, 799, 874, 965
Fnu4HI GCNGC 3 cut(s) 73, 198, 344
FokI GGATG 2 cut(s) 240, 323
FriOI GRGCYC 2 cut(s) 155, 769
Fsp4HI GCNGC 3 cut(s) 73, 198, 344
FspBI CTAG 2 cut(s) 452, 911
GlaI GCGC 4 cut(s) 196, 207, 209, 385
GluI GCNGC 3 cut(s) 73, 198, 344
GsuI CTGGAG 2 cut(s) 139, 256
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 2 cut(s) 606, 641
HapII CCGG 2 cut(s) 183, 762
HgaI GACGC 1 cut(s) 785
HhaI GCGC 4 cut(s) 197, 208, 210, 386
Hin1II CATG 8 cut(s) 131, 343, 527, 680, 739, 803, 878, 969
Hin6I GCGC 4 cut(s) 195, 206, 208, 384
HinP1I GCGC 4 cut(s) 195, 206, 208, 384
HinfI GANTC 3 cut(s) 131, 914, 996
HpaII CCGG 2 cut(s) 183, 762
HphI GGTGA 2 cut(s) 644, 791
Hpy166II GTNNAC 3 cut(s) 229, 463, 500
Hpy188I TCNGA 4 cut(s) 136, 427, 838, 995
Hpy188III TCNNGA 4 cut(s) 128, 677, 762, 1002
Hpy8I GTNNAC 3 cut(s) 229, 463, 500
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 3 cut(s) 37, 62, 142
HpyCH4III ACNGT 4 cut(s) 249, 497, 826, 834
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 9 cut(s) 24, 398, 449, 463, 512, 874, 890, 903, 969
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 188, 197, 203
HpyF3I CTNAG 4 cut(s) 404, 426, 669, 992
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 8 cut(s) 131, 343, 527, 680, 739, 803, 878, 969
HspAI GCGC 4 cut(s) 195, 206, 208, 384
Kpn2I TCCGGA 1 cut(s) 761
Kzo9I GATC 2 cut(s) 538, 856
LguI GCTCTTC 2 cut(s) 378, 774
LmnI GCTCC 3 cut(s) 158, 237, 764
Lsp1109I GCAGC 2 cut(s) 184, 330
LweI GCATC 5 cut(s) 421, 670, 772, 877, 899
MaeI CTAG 2 cut(s) 452, 911
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 249, 429
MalI GATC 2 cut(s) 540, 858
MboI GATC 2 cut(s) 538, 856
MboII GAAGA 7 cut(s) 149, 277, 365, 664, 761, 851, 885
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 1 cut(s) 856
MhlI GDGCHC 3 cut(s) 155, 465, 769
MlsI TGGCCA 2 cut(s) 606, 641
MluCI AATT 5 cut(s) 278, 293, 421, 439, 939
MluNI TGGCCA 2 cut(s) 606, 641
MlyI GAGTC 1 cut(s) 990
MmeI TCCRAC 1 cut(s) 587
MnlI CCTC 5 cut(s) 46, 627, 678, 809, 846
Mox20I TGGCCA 2 cut(s) 606, 641
Mph1103I ATGCAT 1 cut(s) 892
MroI TCCGGA 1 cut(s) 761
MscI TGGCCA 2 cut(s) 606, 641
MseI TTAA 4 cut(s) 113, 281, 332, 864
MslI CAYNNNNRTG 1 cut(s) 522
Msp20I TGGCCA 2 cut(s) 606, 641
MspA1I CMGCKG 1 cut(s) 234
MspCI CTTAAG 1 cut(s) 863
MspI CCGG 2 cut(s) 183, 762
MspR9I CCNGG 1 cut(s) 603
MunI CAATTG 1 cut(s) 939
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 2 cut(s) 75, 208
MwoI GCNNNNNNNGC 4 cut(s) 150, 188, 197, 203
NdeII GATC 2 cut(s) 538, 856
NlaIII CATG 8 cut(s) 131, 343, 527, 680, 739, 803, 878, 969
NlaIV GGNNCC 3 cut(s) 154, 181, 290
NmuCI GTSAC 1 cut(s) 249
NsiI ATGCAT 1 cut(s) 892
NspI RCATGY 3 cut(s) 527, 739, 969
PaeI GCATGC 2 cut(s) 739, 969
PagI TCATGA 2 cut(s) 127, 676
PauI GCGCGC 1 cut(s) 206
PciSI GCTCTTC 2 cut(s) 378, 774
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 2 cut(s) 131, 914
PkrI GCNGC 3 cut(s) 74, 199, 345
PleI GAGTC 1 cut(s) 990
PpsI GAGTC 1 cut(s) 990
PsiI TTATAA 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 154, 181, 290
PsrI GAACNNNNNNTAC 2 cut(s) 972, 1004
PsuI RGATCY 1 cut(s) 856
PteI GCGCGC 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 234
RsaI GTAC 7 cut(s) 230, 246, 390, 574, 615, 949, 981
RsaNI GTAC 7 cut(s) 229, 245, 389, 573, 614, 948, 980
RseI CAYNNNNRTG 1 cut(s) 522
SacI GAGCTC 1 cut(s) 769
SapI GCTCTTC 2 cut(s) 378, 774
SaqAI TTAA 4 cut(s) 113, 281, 332, 864
SatI GCNGC 3 cut(s) 73, 198, 344
Sau3AI GATC 2 cut(s) 538, 856
SchI GAGTC 1 cut(s) 990
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 3 cut(s) 155, 465, 769
SfaNI GCATC 5 cut(s) 421, 670, 772, 877, 899
SmiI ATTTAAAT 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
SpeI ACTAGT 1 cut(s) 451
SphI GCATGC 2 cut(s) 739, 969
Sse9I AATT 5 cut(s) 278, 293, 421, 439, 939
SsiI CCGC 2 cut(s) 73, 665
SspI AATATT 1 cut(s) 712
SspMI CTAG 2 cut(s) 452, 911
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 1 cut(s) 960
SwaI ATTTAAAT 1 cut(s) 333
TaaI ACNGT 4 cut(s) 249, 497, 826, 834
TaiI ACGT 1 cut(s) 168
TasI AATT 5 cut(s) 278, 293, 421, 439, 939
TatI WGTACW 4 cut(s) 228, 572, 947, 979
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 2 cut(s) 131, 914
Tru1I TTAA 4 cut(s) 113, 281, 332, 864
Tru9I TTAA 4 cut(s) 113, 281, 332, 864
TscAI CASTG 2 cut(s) 814, 837
TseFI GTSAC 1 cut(s) 249
TseI GCWGC 2 cut(s) 197, 343
Tsp45I GTSAC 1 cut(s) 249
TspDTI ATGAA 3 cut(s) 665, 676, 885
TspGWI ACGGA 2 cut(s) 56, 572
TspRI CASTG 2 cut(s) 814, 837
Vha464I CTTAAG 1 cut(s) 863
VneI GTGCAC 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 981
XapI RAATTY 1 cut(s) 421
XceI RCATGY 3 cut(s) 527, 739, 969
XspI CTAG 2 cut(s) 452, 911
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.