Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002995

Physical Location & Seq

Genomic Coordinates Forward (+)

36455419 .. 36460247

Gene Structure 4829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1330400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAGTGTTTGAGCCTATCCACCAAATTAGCATGTGGGACGAAAGCTTTAGGAGTAGTGGTAATTTTAATGCCTCAGCATCCATGATACTGGATGTAGACGCAAAACTAGATAACCAGTCAGAGGATGCTTCTCATGGAATTCTGGGACCTTCTAGCAAGTATGATCAAGAAGCAACTAAACCTACGGACAAGGTGCAAAGACGTCTTGCACAAAATCGGGAGGCTGCTCGTAAAAGCCGGATGCGAAAGAAGGCCTATGTTCAGCAGTTAGAAACGAGTCGTGTGAAGCTTATTCAACTAGAGCAAGAACTTGACCGAGTGAAACAACAGGGCGTGTATATCGGCGGTGGATTGGATACTAATCCTCTTGGATTTTCTGGCACCATAAACTCAGGTATAACAACATTTGAGATGGAGTATGGACACTGGGTGGAAGAACAAAATAGGCAAATTTGTGAACTGGGAAGTGCTTTGGACGCTCGTATAAGTGATGTAGAGCTTCGGTTCCTTGTGGATAACGGCATGAGTCACTATTTTGAACTTTTCAGCATGAAATCAACAGCTGCGAAAGCTGACGTTTTCTATGTGATGTCTGGGATGTGGAAAACATCAGCTGAACGGTTTTTCTCGTGGATTGGAGGGTTTCGCCCTTCAGAGCTTCTTAAGGTTCTTCAGCCTCACCTTGACCCGTTGACAGACCAACAACTTTTGGATGTTCACAACCTTAGACAATCATGTCAACAAGCAGAAGATGCTCTTTCTCAAGGTATGGATAAACTCCAGCACACTCTGGCCGAGACTGTGGCAGCTGGTCAACTGGGCGAAGGCAGTTATGTCCCGCAGATGGCTATTGCGATGGAGCGATTGGAAGCTCTTGTGAGCTTTGTGACCCAGGCTGATCATCTTCGGCGGGAGACCTTACAGCAGATGTCACGCATCCTCACAACCCGCCAGGCTGCTCGAGGCCTTCTTGCCTTGGGAGGGTACTTCCATCGCCTTCGGGCTTTGAGCTCACTCTGGGCTGCTCGTCCGCGTGAGCCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

350

Amino Acids

39.26

Weight (kDa)

6.17

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	63 - 101	9.1e-09	bZIP transcription factor
DOG1	PF14144	151 - 226	5.3e-29	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G10030 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210 AT5G65210
fragaria_vesca	FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900 FvH4_1g21900
malus_domestica	MD01G1021600.v1.1 MD15G1330400.v1.1
prunus_persica	Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1 Prupe.6G177200_v2.0.a1
pyrus_communis	pycom01g05010
rosa_chinensis	RchiOBHm_Chr2g0115911
rosa_multiflora	Rmu_ssc0000197.1_g000009
rosa_roxburghii	Rroxscaffold_2G00127690 Rroxscaffold_2G00128520
rosa_rugosa	Rorug02G0200900 Rorug02G0201000 Rorug02G0201100 Rorug02G0201200
rosa_samantha	Rh2BG268900 Rh2CG264400 Rh2DG266100
rosa_wichuraiana	Rw2G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	738
AatII	GACGTC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	1036
AciI	CCGC	5 cut(s)	348, 842, 913, 952, 1034
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	2 cut(s)	141, 453
AcuI	CTGAAG	2 cut(s)	639, 659
AcyI	GRCGYC	1 cut(s)	205
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	989
AfiI	CCNNNNNNNGG	3 cut(s)	124, 847, 984
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	2 cut(s)	299, 542
AjnI	CCWGG	2 cut(s)	894, 954
Alw21I	GWGCWC	1 cut(s)	1016
Alw26I	GTCTC	2 cut(s)	794, 911
Ama87I	CYCGRG	1 cut(s)	963
AoxI	GGCC	3 cut(s)	255, 795, 967
ApeKI	GCWGC	5 cut(s)	227, 566, 809, 959, 1025
ApoI	RAATTY	2 cut(s)	141, 453
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	963
AvaII	GGWCC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	1016
BauI	CACGAG	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	1016
BbvCI	CCTCAGC	1 cut(s)	76
BbvI	GCAGC	5 cut(s)	214, 553, 821, 946, 1012
BccI	CCATC	4 cut(s)	409, 841, 853, 1002
BceAI	ACGGC	1 cut(s)	538
BciT130I	CCWGG	2 cut(s)	896, 956
BciVI	GTATCC	1 cut(s)	352
BclI	TGATCA	2 cut(s)	166, 901
BcoDI	GTCTC	2 cut(s)	794, 911
BfaI	CTAG	3 cut(s)	110, 156, 302
BfrI	CTTAAG	1 cut(s)	665
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	5 cut(s)	228, 567, 810, 960, 1026
BlsI	GCNGC	5 cut(s)	229, 568, 811, 961, 1027
Bme1390I	CCNGG	2 cut(s)	896, 956
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	963
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	3 cut(s)	150, 385, 509
BmrFI	CCNGG	2 cut(s)	896, 956
BmrI	ACTGGG	3 cut(s)	439, 473, 830
BmsI	GCATC	5 cut(s)	89, 118, 234, 745, 948
BmuI	ACTGGG	3 cut(s)	439, 473, 830
BpmI	CTGGAG	1 cut(s)	767
Bpu10I	CCTNAGC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	894, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 847, 984
Bse1I	ACTGG	5 cut(s)	96, 118, 434, 468, 825
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	896, 956
BseDI	CCNNGG	2 cut(s)	894, 978
BseGI	GGATG	7 cut(s)	80, 100, 133, 249, 606, 721, 939
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	3 cut(s)	124, 847, 984
BseMII	CTCAG	2 cut(s)	90, 408
BseNI	ACTGG	5 cut(s)	96, 118, 434, 468, 825
BseXI	GCAGC	5 cut(s)	214, 553, 821, 946, 1012
Bsh1236I	CGCG	1 cut(s)	1036
BshFI	GGCC	3 cut(s)	257, 797, 969
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	1016
BsiHKCI	CYCGRG	1 cut(s)	963
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	3 cut(s)	53, 162, 824
BslI	CCNNNNNNNGG	3 cut(s)	124, 847, 984
BsmAI	GTCTC	2 cut(s)	794, 911
BsmFI	GGGAC	3 cut(s)	53, 162, 824
BsnI	GGCC	3 cut(s)	257, 797, 969
Bso31I	GGTCTC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	963
Bsp1286I	GDGCHC	1 cut(s)	1016
Bsp143I	GATC	2 cut(s)	166, 901
BspACI	CCGC	5 cut(s)	348, 842, 913, 952, 1034
BspANI	GGCC	3 cut(s)	257, 797, 969
BspCNI	CTCAG	2 cut(s)	89, 407
BspFNI	CGCG	1 cut(s)	1036
BspLI	GGNNCC	3 cut(s)	150, 385, 509
BspT107I	GGYRCC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	911
BsrI	ACTGG	5 cut(s)	96, 118, 434, 468, 825
BssECI	CCNNGG	2 cut(s)	894, 978
BssMI	GATC	2 cut(s)	166, 901
BssNI	GRCGYC	1 cut(s)	205
BssSI	CACGAG	1 cut(s)	631
BssT1I	CCWWGG	1 cut(s)	978
Bst2BI	CACGAG	1 cut(s)	631
Bst2UI	CCWGG	2 cut(s)	896, 956
Bst4CI	ACNGT	2 cut(s)	624, 805
BstACI	GRCGYC	1 cut(s)	205
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	1 cut(s)	1044
BstDEI	CTNAG	3 cut(s)	76, 394, 728
BstF5I	GGATG	7 cut(s)	80, 100, 133, 249, 606, 721, 939
BstFNI	CGCG	1 cut(s)	1036
BstKTI	GATC	2 cut(s)	169, 904
BstMAI	GTCTC	2 cut(s)	794, 911
BstMBI	GATC	2 cut(s)	166, 901
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 572, 755
BstNI	CCWGG	2 cut(s)	896, 956
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	894, 954
BstUI	CGCG	1 cut(s)	1036
BstV1I	GCAGC	5 cut(s)	214, 553, 821, 946, 1012
BstXI	CCANNNNNNTGG	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	257, 797, 969
BtgZI	GCGATG	2 cut(s)	872, 980
BtsCI	GGATG	7 cut(s)	80, 100, 133, 249, 606, 721, 939
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	1044
Cfr13I	GGNCC	1 cut(s)	149
CseI	GACGC	2 cut(s)	110, 488
Csp6I	GTAC	1 cut(s)	988
CviAII	CATG	6 cut(s)	34, 85, 137, 526, 553, 738
CviQI	GTAC	1 cut(s)	988
DdeI	CTNAG	3 cut(s)	76, 394, 728
DpnI	GATC	2 cut(s)	168, 903
DpnII	GATC	2 cut(s)	166, 901
DraIII	CACNNNGTG	1 cut(s)	433
DrdI	GACNNNNNNGTC	1 cut(s)	738
DseDI	GACNNNNNNGTC	1 cut(s)	738
EaeI	YGGCCR	1 cut(s)	795
Ecl136II	GAGCTC	1 cut(s)	1014
Eco130I	CCWWGG	1 cut(s)	978
Eco147I	AGGCCT	2 cut(s)	257, 969
Eco24I	GRGCYC	1 cut(s)	1016
Eco31I	GGTCTC	1 cut(s)	911
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	1014
Eco57I	CTGAAG	2 cut(s)	639, 659
Eco88I	CYCGRG	1 cut(s)	963
EcoICRI	GAGCTC	1 cut(s)	1014
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	894, 954
EcoT14I	CCWWGG	1 cut(s)	978
EcoT38I	GRGCYC	1 cut(s)	1016
ErhI	CCWWGG	1 cut(s)	978
FaeI	CATG	6 cut(s)	37, 88, 140, 529, 556, 741
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	3 cut(s)	53, 162, 824
FatI	CATG	6 cut(s)	33, 84, 136, 525, 552, 737
FauI	CCCGC	3 cut(s)	849, 906, 959
FbaI	TGATCA	2 cut(s)	166, 901
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	228, 567, 810, 960, 1026
FokI	GGATG	7 cut(s)	67, 107, 140, 256, 613, 728, 926
FriOI	GRGCYC	1 cut(s)	1016
Fsp4HI	GCNGC	5 cut(s)	228, 567, 810, 960, 1026
FspBI	CTAG	3 cut(s)	110, 156, 302
GluI	GCNGC	5 cut(s)	228, 567, 810, 960, 1026
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	3 cut(s)	257, 797, 969
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	2 cut(s)	110, 488
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	6 cut(s)	37, 88, 140, 529, 556, 741
HincII	GTYRAC	3 cut(s)	696, 743, 818
HindII	GTYRAC	3 cut(s)	696, 743, 818
HindIII	AAGCTT	2 cut(s)	46, 290
HinfI	GANTC	2 cut(s)	280, 529
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	6 cut(s)	100, 461, 696, 721, 743, 818
Hpy188I	TCNGA	2 cut(s)	124, 658
Hpy188III	TCNNGA	2 cut(s)	170, 221
Hpy8I	GTNNAC	6 cut(s)	100, 461, 696, 721, 743, 818
HpyAV	CCTTC	6 cut(s)	162, 247, 663, 821, 980, 1010
HpyCH4III	ACNGT	2 cut(s)	624, 805
HpyCH4IV	ACGT	2 cut(s)	205, 579
HpyCH4V	TGCA	2 cut(s)	199, 212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 572, 755
HpyF3I	CTNAG	3 cut(s)	76, 394, 728
HpySE526I	ACGT	2 cut(s)	205, 579
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	6 cut(s)	37, 88, 140, 529, 556, 741
Ksp22I	TGATCA	2 cut(s)	166, 901
Kzo9I	GATC	2 cut(s)	166, 901
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	5 cut(s)	214, 553, 821, 946, 1012
LweI	GCATC	5 cut(s)	89, 118, 234, 745, 948
MaeI	CTAG	3 cut(s)	110, 156, 302
MaeII	ACGT	2 cut(s)	205, 579
MaeIII	GTNAC	3 cut(s)	530, 889, 933
MalI	GATC	2 cut(s)	168, 903
MboI	GATC	2 cut(s)	166, 901
MboII	GAAGA	4 cut(s)	449, 665, 764, 899
MhlI	GDGCHC	1 cut(s)	1016
MluCI	AATT	4 cut(s)	27, 64, 141, 453
MlyI	GAGTC	2 cut(s)	289, 538
MnlI	CCTC	9 cut(s)	85, 118, 217, 378, 635, 690, 953, 959, 977
MseI	TTAA	2 cut(s)	69, 666
MspA1I	CMGCKG	3 cut(s)	566, 617, 812
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	896, 956
MvaI	CCWGG	2 cut(s)	896, 956
MvnI	CGCG	1 cut(s)	1036
MwoI	GCNNNNNNNGC	3 cut(s)	479, 572, 755
NdeII	GATC	2 cut(s)	166, 901
NlaIII	CATG	6 cut(s)	37, 88, 140, 529, 556, 741
NlaIV	GGNNCC	3 cut(s)	150, 385, 509
NmeAIII	GCCGAG	1 cut(s)	823
NmuCI	GTSAC	3 cut(s)	530, 889, 933
NspI	RCATGY	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	963
PceI	AGGCCT	2 cut(s)	257, 969
PkrI	GCNGC	5 cut(s)	229, 568, 811, 961, 1027
PleI	GAGTC	2 cut(s)	288, 537
PpsI	GAGTC	2 cut(s)	288, 537
PpuMI	RGGWCCY	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	1016
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	894, 954
PspGI	CCWGG	2 cut(s)	894, 954
PspN4I	GGNNCC	3 cut(s)	150, 385, 509
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PspXI	VCTCGAGB	1 cut(s)	963
PvuII	CAGCTG	3 cut(s)	566, 617, 812
RsaI	GTAC	1 cut(s)	989
RsaNI	GTAC	1 cut(s)	988
SacI	GAGCTC	1 cut(s)	1016
SaqAI	TTAA	2 cut(s)	69, 666
SatI	GCNGC	5 cut(s)	228, 567, 810, 960, 1026
Sau3AI	GATC	2 cut(s)	166, 901
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	2 cut(s)	289, 538
ScrFI	CCNGG	2 cut(s)	896, 956
SduI	GDGCHC	1 cut(s)	1016
SfaNI	GCATC	5 cut(s)	89, 118, 234, 745, 948
Sfr274I	CTCGAG	1 cut(s)	963
SinI	GGWCC	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	963
SmlI	CTYRAG	3 cut(s)	665, 765, 963
SmoI	CTYRAG	3 cut(s)	665, 765, 963
Sse9I	AATT	4 cut(s)	27, 64, 141, 453
SseBI	AGGCCT	2 cut(s)	257, 969
SsiI	CCGC	5 cut(s)	348, 842, 913, 952, 1034
SspMI	CTAG	3 cut(s)	110, 156, 302
SstI	GAGCTC	1 cut(s)	1016
StuI	AGGCCT	2 cut(s)	257, 969
StyD4I	CCNGG	2 cut(s)	894, 954
StyI	CCWWGG	1 cut(s)	978
TaaI	ACNGT	2 cut(s)	624, 805
TaiI	ACGT	2 cut(s)	208, 582
TaqI	TCGA	1 cut(s)	964
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	4 cut(s)	27, 64, 141, 453
Tru1I	TTAA	2 cut(s)	69, 666
Tru9I	TTAA	2 cut(s)	69, 666
TscAI	CASTG	1 cut(s)	434
TseFI	GTSAC	3 cut(s)	530, 889, 933
TseI	GCWGC	5 cut(s)	227, 566, 809, 959, 1025
Tsp45I	GTSAC	3 cut(s)	530, 889, 933
TspDTI	ATGAA	1 cut(s)	569
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	434
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	2 cut(s)	141, 453
XceI	RCATGY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	963
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	3 cut(s)	110, 156, 302
ZraI	GACGTC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.