AT5G10660

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005356
Physical Location & Seq
Forward (+)
3370096 .. 3372348
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10660.3

Sequence Viewer

Length: 1224 bp
ATGGCAACGACGTCTAGTACAACGAAAACGAAACGGGACAACAAAAACCTAACCAGATCAAAATCACTCGGCAGAAAGCCAAAGCCGGTCTCATCATCAGAGCCTGAAGCGAACGCAGATGGATCTGATCGGAAAACAATTGGGAAGCCTTTGCCTAATTATCTGAAACCTACAATCAGCTCGAGACCGGACCCGGTCAAGTTCTTGAGAAAGAACAACGCCGTCGAAGAAAATCAGAAGCTTCTTCGTAGACGATCCTTTGATCATCCTCCTTCGTCTTTGACTTCTCCATCAACTTCATCAGCCCATAGATCTCTCAATACCTCTCCTGCCCACCCACACCTGCGAGACAAACCCGCGGTTCCAAGGGAGAAGCCTGTCACTGGTCTGCGTTCTACATCTTTCCATGGAAGCAGCAGGGGAGGTCTCAGAGGAAGCAGTACGGTGAAATCACCTCCTGTGGCTTCAAGAGGATCTTCAGGGGTAAAGAAGAGCGGTCTAAGCGGTAACAGTTCTTCCAAGAGCAAAAAGGAAGGTTCTGGGAATGTTCCCAAGAAGTCTTCGGGTAAAGAGATTTCCCCGGATTCTTCTCCTCTTGCGTCTGCTCACGAAGACGAAGAAGAGATTGTCAAGGTTGAGACCGATGTACACATTTCTGACCACGGAGAGGAACCGAAAGAGGAAGATAAAGATCAGTTTGCACAACCGGATGAATCCGGTGAAGAGAAGGAGACCAGTCCAGTGGCTGCCTCCACAGAAGAACAAAAAGGAGAACTGATCGATGAGGATAAAAGCACAGAGCAAATAGAGGAGCCGAAAGAACCAGAGAACATCGAAGAAAACAACAGTGAAGAAGAGGAAGAAGTCAAAAAGAAATCTGATGATGAGGAAAATAGCGAGACAGTTGCTACTACTACAGATATGAATGAAGCTGTGAATGTCGAAGAAAGTAAGGAAGAGGAAAAGGAAGAAGCAGAAGTTAAAGAAGAGGAGGGCGAAAGCAGCGCCGCGAAAGAAGAAACAACCGAAACAATGGCTCAAGTAGAAGAATTACCAGAGGAAGGAACAAAGAATGAAGTGGTGCAAGGGAAGAAGGAATCTCCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACTCGAAGAAGAACAAGGTCTTGGCTCTTGCTGGAGCCTTTCAAACCGTTATTGACTATGAAACTGCTGCATCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaM_binding

Protein Analysis

407

Amino Acids

44.27

Weight (kDa)

5.04

Isoelectric Point (pI)

71.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 351
AatII GACGTC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 250
AccII CGCG 2 cut(s) 359, 1010
AciI CCGC 5 cut(s) 357, 359, 495, 504, 1008
AclWI GGATC 3 cut(s) 130, 249, 481
AcuI CTGAAG 2 cut(s) 126, 462
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 3 cut(s) 19, 442, 648
AfiI CCNNNNNNNGG 3 cut(s) 383, 667, 1061
AgsI TTSAA 2 cut(s) 468, 1187
AjuI GAANNNNNNNTTGG 2 cut(s) 1148, 1180
AluBI AGCT 3 cut(s) 180, 241, 932
AluI AGCT 3 cut(s) 180, 241, 932
Alw26I GTCTC 7 cut(s) 94, 178, 342, 431, 632, 725, 893
AlwI GGATC 3 cut(s) 130, 249, 481
AlwNI CAGNNNCTG 2 cut(s) 104, 746
Ama87I CYCGRG 1 cut(s) 181
ApeKI GCWGC 4 cut(s) 414, 746, 1002, 1211
AspLEI GCGC 1 cut(s) 1007
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 2 cut(s) 194, 581
AsuHPI GGTGA 3 cut(s) 444, 457, 731
AvaI CYCGRG 1 cut(s) 181
AvaII GGWCC 1 cut(s) 190
BarI GAAGNNNNNNTAC 2 cut(s) 499, 531
BbsI GAAGAC 2 cut(s) 552, 618
BbvI GCAGC 4 cut(s) 426, 733, 1014, 1198
BccI CCATC 2 cut(s) 113, 298
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 194, 581
BcoDI GTCTC 7 cut(s) 94, 178, 342, 431, 632, 725, 893
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 915
BfoI RGCGCY 1 cut(s) 1008
BfuAI ACCTGC 1 cut(s) 351
BglII AGATCT 1 cut(s) 311
BisI GCNGC 5 cut(s) 415, 747, 1003, 1008, 1212
BlsI GCNGC 5 cut(s) 416, 748, 1004, 1009, 1213
Bme1390I CCNGG 2 cut(s) 194, 581
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 5 cut(s) 192, 363, 672, 813, 1180
BmrFI CCNGG 2 cut(s) 194, 581
BmsI GCATC 1 cut(s) 1125
BpiI GAAGAC 2 cut(s) 552, 618
BpmI CTGGAG 1 cut(s) 1197
BpuEI CTTGAG 2 cut(s) 226, 1023
BpuMI CCSGG 2 cut(s) 194, 581
Bsa29I ATCGAT 1 cut(s) 780
BsaBI GATNNNNATC 2 cut(s) 61, 690
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 5 cut(s) 94, 178, 431, 632, 725
BsaJI CCNNGG 5 cut(s) 357, 365, 406, 579, 661
BsaWI WCCGGW 3 cut(s) 187, 706, 716
Bsc4I CCNNNNNNNGG 3 cut(s) 383, 667, 1061
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 3 cut(s) 388, 735, 740
Bse8I GATNNNNATC 2 cut(s) 61, 690
BseCI ATCGAT 1 cut(s) 780
BseDI CCNNGG 5 cut(s) 357, 365, 406, 579, 661
BseGI GGATG 2 cut(s) 265, 715
BseJI GATNNNNATC 2 cut(s) 61, 690
BseLI CCNNNNNNNGG 3 cut(s) 383, 667, 1061
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 3 cut(s) 388, 735, 740
BseRI GAGGAG 3 cut(s) 582, 824, 1004
BseXI GCAGC 4 cut(s) 426, 733, 1014, 1198
Bsh1236I CGCG 2 cut(s) 359, 1010
BshVI ATCGAT 1 cut(s) 780
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 6 cut(s) 86, 188, 194, 581, 707, 717
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 383, 667, 1061
BsmAI GTCTC 7 cut(s) 94, 178, 342, 431, 632, 725, 893
BsmFI GGGAC 1 cut(s) 50
Bso31I GGTCTC 5 cut(s) 94, 178, 431, 632, 725
BsoBI CYCGRG 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 9 cut(s) 56, 122, 127, 254, 262, 311, 473, 691, 777
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 5 cut(s) 357, 359, 495, 504, 1008
BspCNI CTCAG 1 cut(s) 441
BspDI ATCGAT 1 cut(s) 780
BspFNI CGCG 2 cut(s) 359, 1010
BspLI GGNNCC 5 cut(s) 192, 363, 672, 813, 1180
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 3 cut(s) 130, 249, 481
BspQI GCTCTTC 1 cut(s) 485
BspTNI GGTCTC 5 cut(s) 94, 178, 431, 632, 725
BsrBI CCGCTC 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 3 cut(s) 388, 735, 740
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 5 cut(s) 357, 365, 406, 579, 661
BssMI GATC 9 cut(s) 56, 122, 127, 254, 262, 311, 473, 691, 777
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 365, 406
Bst4CI ACNGT 5 cut(s) 445, 512, 848, 904, 1192
Bst6I CTCTTC 6 cut(s) 485, 615, 717, 849, 951, 981
BstACI GRCGYC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 646
BstDEI CTNAG 3 cut(s) 428, 500, 1218
BstDSI CCRYGG 3 cut(s) 357, 406, 661
BstF5I GGATG 2 cut(s) 265, 715
BstFNI CGCG 2 cut(s) 359, 1010
BstH2I RGCGCY 1 cut(s) 1008
BstHHI GCGC 1 cut(s) 1007
BstKTI GATC 9 cut(s) 59, 125, 130, 257, 265, 314, 476, 694, 780
BstMAI GTCTC 7 cut(s) 94, 178, 342, 431, 632, 725, 893
BstMBI GATC 9 cut(s) 56, 122, 127, 254, 262, 311, 473, 691, 777
BstMWI GCNNNNNNNGC 2 cut(s) 501, 1002
BstSCI CCNGG 2 cut(s) 192, 579
BstSFI CTRYAG 1 cut(s) 915
BstUI CGCG 2 cut(s) 359, 1010
BstV1I GCAGC 4 cut(s) 426, 733, 1014, 1198
BstV2I GAAGAC 2 cut(s) 552, 618
BstX2I RGATCY 3 cut(s) 122, 311, 473
BstXI CCANNNNNNTGG 1 cut(s) 742
BstYI RGATCY 3 cut(s) 122, 311, 473
Bsu15I ATCGAT 1 cut(s) 780
BsuTUI ATCGAT 1 cut(s) 780
BtgI CCRYGG 3 cut(s) 357, 406, 661
BtsCI GGATG 2 cut(s) 265, 715
BtsIMutI CAGTG 3 cut(s) 381, 747, 853
BveI ACCTGC 1 cut(s) 351
CaiI CAGNNNCTG 2 cut(s) 104, 746
CfoI GCGC 1 cut(s) 1007
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 190
Cfr42I CCGCGG 1 cut(s) 360
ClaI ATCGAT 1 cut(s) 780
CseI GACGC 1 cut(s) 588
Csp6I GTAC 3 cut(s) 18, 441, 647
CviAII CATG 1 cut(s) 407
CviQI GTAC 3 cut(s) 18, 441, 647
DdeI CTNAG 3 cut(s) 428, 500, 1218
DpnI GATC 9 cut(s) 58, 124, 129, 256, 264, 313, 475, 693, 779
DpnII GATC 9 cut(s) 56, 122, 127, 254, 262, 311, 473, 691, 777
Eam1104I CTCTTC 6 cut(s) 485, 615, 717, 849, 951, 981
EarI CTCTTC 6 cut(s) 485, 615, 717, 849, 951, 981
Eco130I CCWWGG 2 cut(s) 365, 406
Eco31I GGTCTC 5 cut(s) 94, 178, 431, 632, 725
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 126, 462
Eco88I CYCGRG 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 365, 406
ErhI CCWWGG 2 cut(s) 365, 406
FaeI CATG 1 cut(s) 410
FaiI YATR 4 cut(s) 309, 408, 923, 1203
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 406
FauI CCCGC 1 cut(s) 364
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 5 cut(s) 415, 747, 1003, 1008, 1212
FokI GGATG 2 cut(s) 252, 722
Fsp4HI GCNGC 5 cut(s) 415, 747, 1003, 1008, 1212
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 1006
GluI GCNGC 5 cut(s) 415, 747, 1003, 1008, 1212
GsuI CTGGAG 1 cut(s) 1197
HaeII RGCGCY 1 cut(s) 1008
HapII CCGG 6 cut(s) 86, 188, 194, 581, 707, 717
HgaI GACGC 1 cut(s) 588
HhaI GCGC 1 cut(s) 1007
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 1 cut(s) 410
Hin6I GCGC 1 cut(s) 1005
HinP1I GCGC 1 cut(s) 1005
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 3 cut(s) 584, 713, 1097
HpaII CCGG 6 cut(s) 86, 188, 194, 581, 707, 717
HphI GGTGA 3 cut(s) 444, 457, 731
Hpy166II GTNNAC 2 cut(s) 251, 649
Hpy188I TCNGA 8 cut(s) 100, 127, 132, 165, 237, 431, 658, 880
Hpy188III TCNNGA 4 cut(s) 183, 205, 468, 608
Hpy8I GTNNAC 2 cut(s) 251, 649
Hpy99I CGWCG 2 cut(s) 13, 227
HpyAV CCTTC 5 cut(s) 282, 527, 721, 1055, 1087
HpyCH4III ACNGT 5 cut(s) 445, 512, 848, 904, 1192
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 701, 1084, 1138, 1214
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 1002
HpyF3I CTNAG 3 cut(s) 428, 500, 1218
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 410
HspAI GCGC 1 cut(s) 1005
Ksp22I TGATCA 1 cut(s) 262
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 9 cut(s) 56, 122, 127, 254, 262, 311, 473, 691, 777
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 2 cut(s) 811, 1178
Lsp1109I GCAGC 4 cut(s) 426, 733, 1014, 1198
LweI GCATC 1 cut(s) 1125
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 379, 506
MalI GATC 9 cut(s) 58, 124, 129, 256, 264, 313, 475, 693, 779
MbiI CCGCTC 1 cut(s) 495
MboI GATC 9 cut(s) 56, 122, 127, 254, 262, 311, 473, 691, 777
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 3 cut(s) 122, 311, 473
MluCI AATT 3 cut(s) 138, 157, 1049
MmeI TCCRAC 1 cut(s) 1127
MseI TTAA 1 cut(s) 981
MslI CAYNNNNRTG 1 cut(s) 1219
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 6 cut(s) 86, 188, 194, 581, 707, 717
MspR9I CCNGG 2 cut(s) 194, 581
MunI CAATTG 1 cut(s) 138
MvnI CGCG 2 cut(s) 359, 1010
MwoI GCNNNNNNNGC 2 cut(s) 501, 1002
NciI CCSGG 2 cut(s) 194, 581
NcoI CCATGG 1 cut(s) 406
NdeII GATC 9 cut(s) 56, 122, 127, 254, 262, 311, 473, 691, 777
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 5 cut(s) 192, 363, 672, 813, 1180
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 181
PaqCI CACCTGC 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 584, 713, 1097
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 5 cut(s) 416, 748, 1004, 1009, 1213
PspN4I GGNNCC 5 cut(s) 192, 363, 672, 813, 1180
PspPI GGNCC 1 cut(s) 190
PstNI CAGNNNCTG 2 cut(s) 104, 746
PsuI RGATCY 3 cut(s) 122, 311, 473
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 3 cut(s) 19, 442, 648
RsaNI GTAC 3 cut(s) 18, 441, 647
RseI CAYNNNNRTG 1 cut(s) 1219
SacII CCGCGG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 981
SatI GCNGC 5 cut(s) 415, 747, 1003, 1008, 1212
Sau3AI GATC 9 cut(s) 56, 122, 127, 254, 262, 311, 473, 691, 777
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 194, 581
SfaNI GCATC 1 cut(s) 1125
SfcI CTRYAG 1 cut(s) 915
Sfr274I CTCGAG 1 cut(s) 181
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 1219
SmlI CTYRAG 3 cut(s) 181, 205, 1038
SmoI CTYRAG 3 cut(s) 181, 205, 1038
Sse9I AATT 3 cut(s) 138, 157, 1049
SsiI CCGC 5 cut(s) 357, 359, 495, 504, 1008
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 192, 579
StyI CCWWGG 2 cut(s) 365, 406
TaaI ACNGT 5 cut(s) 445, 512, 848, 904, 1192
TaiI ACGT 1 cut(s) 14
TaqI TCGA 6 cut(s) 182, 225, 780, 834, 942, 1148
TaqII GACCGA 1 cut(s) 656
TasI AATT 3 cut(s) 138, 157, 1049
TatI WGTACW 2 cut(s) 17, 646
TauI GCSGC 1 cut(s) 1010
TfiI GAWTC 3 cut(s) 584, 713, 1097
Tru1I TTAA 1 cut(s) 981
Tru9I TTAA 1 cut(s) 981
TscAI CASTG 3 cut(s) 388, 747, 853
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 4 cut(s) 414, 746, 1002, 1211
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 6 cut(s) 288, 726, 938, 942, 1089, 1218
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 3 cut(s) 388, 747, 853
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 1 cut(s) 15
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.