Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005356

Physical Location & Seq

Genomic Coordinates Forward (+)

8552647 .. 8554275

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCAACGACGTCAAGCACGACAAAAGCAAAACCGGACAACCAAAACCTAAGCAGAACAAAATCTCTCGGTAGAAAACCAAAGCAACCTTTGTCGACTGCGTCATCAGAAGATGGGTCGTCTGATCAGAAACCGGAGAAGCCTTTGCCAAACTATTTGAAACCAACAATCAGTTCAAGACCCGACGCAGGCAAGCTCTTGAAGAAGAACAACAATAGTCTTGATGATAACCAAAAGCTTCTCCGTAGAAGATCTTTTGATCGACCTCCTTCTTCTTTGACTTCTCCTTCTACTTCTGCTTCTCCGCGTATCCAAAAATCCCTCAACGTCTCTCCTTCTCGCTCACGAGACAGACCAGCGGTTCCAAGAGAGAAGCCTGTCACAGCTCTACGCTCTTCGTCTTTCCATGGAAGTAGAAACGTTCCAAAAGGAGGTAATACTGCGAAATCGCCTCCTGTGGCGCCAAAGAAGAGCGGTTTGAACAGTAGCAGCACTTCTTCAAAGAGCAAAAAGGAAGGCTCTGAAAATGTTAGGATAAAGAAAGCATCTGATAAAGAGATTGCCTTGGATTCTGCTTCTATGTCGTCTGCTCAGGAGGATCATCAAGAGGAGATTCTCAAGGTCGAGAGTGATCATTTACAAGTTTCTGATCATGATATAGAAGAACCAAAATATGAGAAAGAAGAGAAAGAGGTTCAAGAAAAGGTTGTCCAAGCCAATGAATCCGTTGAAGAGAAGGCTGAGAGTAGTGGACCAACACCGGTTGCTTCTCCTGTTGGGAAAGATTGCAATGCTGTCGTCGCAGAATTAGAAGAAAAATTGATCAAGAATGAAGATGATATCGAAGAGAAAACAGAGGAAATGAAAGAACAAGACAATAACCAAGCCAACAAAAGTGAAGAAGAGGAAGACGTTAAGAAGAAGATTGATGAGAATGAGACACCAGAGAAGGTTGATACTGAAAGCAAAGAAGTTGAAAGTGTCGAAGAGACTACACAAGAAAAAGAAGAAGAAGTGAAAGAAGAGGGGAAGGAGAGGGTGGAAGAGGAGGAGAAGGAGAAGGAAAAGGTTAAAGAAGATGATCAAAAGGAGAAGGTGGAAGAAGAAGAGAAGGAAAAGGTTAAGGGTGATGAGGAAAAGGAGAAGGTTAAAGAAGAAGAATCAGCAGAGGGAAAGAAGAAGGAAGTAGTGAAAGGGAAGAAGGAATCTCCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACCCGAGGAAGAACAAAGTTTTGGCTCTTGCTGGAGCTTTTCAAACCGTTATTGACTATGAAACTGCTGCATCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

443

Amino Acids

49.28

Weight (kDa)

5.21

Isoelectric Point (pI)

64.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10660 AT5G10660 AT5G10660 AT5G10680 AT5G10680 AT5G24880
fragaria_vesca	FvH4_2g36751 FvH4_2g36751 FvH4_2g36751
malus_domestica	MD08G1128300.v1.1 MD15G1107800.v1.1
prunus_persica	Prupe.1G460100_v2.0.a1 Prupe.1G460100_v2.0.a1
pyrus_communis	pycom08g10720 pycom15g09850
rosa_chinensis	RchiOBHm_Chr6g0304991
rosa_laevigata	RLG00000010930
rosa_multiflora	Rmu_co7983124.1_g000001 Rmu_sc0028342.1_g000004 Rmu_sc0039167.1_g000001 Rmu_sc0039168.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163280
rosa_rugosa	Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG448100 Rh6BG452700 Rh6CG461800 Rh6DG448700
rosa_wichuraiana	Rw6G039020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	460
AccBSI	CCGCTC	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	1 cut(s)	307
AciI	CCGC	3 cut(s)	305, 359, 474
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	1 cut(s)	606
AcyI	GRCGYC	2 cut(s)	11, 461
AfiI	CCNNNNNNNGG	2 cut(s)	188, 431
AgeI	ACCGGT	1 cut(s)	760
AgsI	TTSAA	9 cut(s)	160, 177, 202, 481, 501, 698, 731, 977, 1295
AjuI	GAANNNNNNNTTGG	4 cut(s)	157, 189, 1256, 1288
AluBI	AGCT	5 cut(s)	196, 238, 386, 1217, 1289
AluI	AGCT	5 cut(s)	196, 238, 386, 1217, 1289
Alw26I	GTCTC	4 cut(s)	334, 342, 932, 983
AlwI	GGATC	1 cut(s)	606
Ama87I	CYCGRG	1 cut(s)	1255
ApeKI	GCWGC	2 cut(s)	489, 1319
AsiGI	ACCGGT	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	1139
AvaI	CYCGRG	1 cut(s)	1255
AvaII	GGWCC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	460
BarI	GAAGNNNNNNTAC	2 cut(s)	478, 510
BauI	CACGAG	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	915
BbvI	GCAGC	2 cut(s)	501, 1306
BccI	CCATC	2 cut(s)	107, 1219
BcgI	CGANNNNNNTGC	2 cut(s)	778, 812
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	5 cut(s)	124, 631, 649, 822, 1081
BcoDI	GTCTC	4 cut(s)	334, 342, 932, 983
BfoI	RGCGCY	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	2 cut(s)	490, 1320
BlsI	GCNGC	2 cut(s)	491, 1321
Bme18I	GGWCC	1 cut(s)	752
BmeT110I	CYCGRG	1 cut(s)	1255
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	2 cut(s)	363, 462
BmsI	GCATC	2 cut(s)	554, 1233
BpiI	GAAGAC	1 cut(s)	915
BpmI	CTGGAG	1 cut(s)	1305
Bpu10I	CCTNAGC	2 cut(s)	50, 591
BpuEI	CTTGAG	1 cut(s)	602
BsaHI	GRCGYC	2 cut(s)	11, 461
BsaJI	CCNNGG	3 cut(s)	406, 564, 1256
BsaWI	WCCGGW	3 cut(s)	34, 133, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 431
Bse118I	RCCGGY	1 cut(s)	760
Bse3DI	GCAATG	1 cut(s)	796
BseDI	CCNNGG	3 cut(s)	406, 564, 1256
BseLI	CCNNNNNNNGG	2 cut(s)	188, 431
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	2 cut(s)	605, 732
BseRI	GAGGAG	3 cut(s)	623, 1061, 1064
BseXI	GCAGC	2 cut(s)	501, 1306
Bsh1236I	CGCG	1 cut(s)	307
BshNI	GGYRCC	1 cut(s)	460
BshTI	ACCGGT	1 cut(s)	760
BsiHKCI	CYCGRG	1 cut(s)	1255
BsiSI	CCGG	3 cut(s)	35, 134, 761
BslI	CCNNNNNNNGG	2 cut(s)	188, 431
BsmAI	GTCTC	4 cut(s)	334, 342, 932, 983
BsmBI	CGTCTC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	1255
Bsp143I	GATC	8 cut(s)	124, 251, 259, 598, 631, 649, 822, 1081
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	3 cut(s)	305, 359, 474
BspCNI	CTCAG	2 cut(s)	604, 733
BspFNI	CGCG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	2 cut(s)	363, 462
BspPI	GGATC	1 cut(s)	606
BspQI	GCTCTTC	2 cut(s)	400, 464
BspT107I	GGYRCC	1 cut(s)	460
BsrBI	CCGCTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	796
BsrFI	RCCGGY	1 cut(s)	760
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	3 cut(s)	406, 564, 1256
BssMI	GATC	8 cut(s)	124, 251, 259, 598, 631, 649, 822, 1081
BssNI	GRCGYC	2 cut(s)	11, 461
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	406, 564
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	485, 1300
BstACI	GRCGYC	2 cut(s)	11, 461
BstC8I	GCNNGC	2 cut(s)	190, 194
BstDEI	CTNAG	4 cut(s)	50, 591, 741, 1326
BstDSI	CCRYGG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	8 cut(s)	127, 254, 262, 601, 634, 652, 825, 1084
BstMAI	GTCTC	4 cut(s)	334, 342, 932, 983
BstMBI	GATC	8 cut(s)	124, 251, 259, 598, 631, 649, 822, 1081
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	501, 1306
BstV2I	GAAGAC	1 cut(s)	915
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuI	GTATCC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	190, 194
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	760
Cfr13I	GGNCC	1 cut(s)	752
CseI	GACGC	2 cut(s)	90, 194
CspAI	ACCGGT	1 cut(s)	760
CviAII	CATG	2 cut(s)	407, 653
DdeI	CTNAG	4 cut(s)	50, 591, 741, 1326
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	8 cut(s)	126, 253, 261, 600, 633, 651, 824, 1083
DpnII	GATC	8 cut(s)	124, 251, 259, 598, 631, 649, 822, 1081
Eco130I	CCWWGG	2 cut(s)	406, 564
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	1255
EcoRV	GATATC	1 cut(s)	841
EcoT14I	CCWWGG	2 cut(s)	406, 564
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	406, 564
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	2 cut(s)	410, 656
FaiI	YATR	6 cut(s)	408, 581, 654, 659, 675, 1311
FatI	CATG	2 cut(s)	406, 652
FbaI	TGATCA	5 cut(s)	124, 631, 649, 822, 1081
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	2 cut(s)	490, 1320
Fsp4HI	GCNGC	2 cut(s)	490, 1320
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	2 cut(s)	490, 1320
GsuI	CTGGAG	1 cut(s)	1305
HaeII	RGCGCY	1 cut(s)	464
HapII	CCGG	3 cut(s)	35, 134, 761
HgaI	GACGC	2 cut(s)	90, 194
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	2 cut(s)	11, 461
Hin1II	CATG	2 cut(s)	410, 656
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	5 cut(s)	569, 613, 722, 1160, 1205
HpaII	CCGG	3 cut(s)	35, 134, 761
HphI	GGTGA	1 cut(s)	1139
Hpy166II	GTNNAC	2 cut(s)	96, 752
Hpy188I	TCNGA	6 cut(s)	109, 124, 129, 523, 550, 649
Hpy8I	GTNNAC	2 cut(s)	96, 752
Hpy99I	CGWCG	3 cut(s)	13, 188, 803
HpyCH4III	ACNGT	2 cut(s)	485, 1300
HpyCH4IV	ACGT	4 cut(s)	11, 327, 420, 912
HpyCH4V	TGCA	3 cut(s)	789, 1246, 1322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	4 cut(s)	50, 591, 741, 1326
HpySE526I	ACGT	4 cut(s)	11, 327, 420, 912
Hsp92I	GRCGYC	2 cut(s)	11, 461
Hsp92II	CATG	2 cut(s)	410, 656
HspAI	GCGC	1 cut(s)	461
KasI	GGCGCC	1 cut(s)	460
Ksp22I	TGATCA	5 cut(s)	124, 631, 649, 822, 1081
Kzo9I	GATC	8 cut(s)	124, 251, 259, 598, 631, 649, 822, 1081
LguI	GCTCTTC	2 cut(s)	400, 464
LmnI	GCTCC	1 cut(s)	1286
Lsp1109I	GCAGC	2 cut(s)	501, 1306
LweI	GCATC	2 cut(s)	554, 1233
MaeII	ACGT	4 cut(s)	11, 327, 420, 912
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	8 cut(s)	126, 253, 261, 600, 633, 651, 824, 1083
MbiI	CCGCTC	1 cut(s)	474
MboI	GATC	8 cut(s)	124, 251, 259, 598, 631, 649, 822, 1081
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	2 cut(s)	806, 818
Mly113I	GGCGCC	1 cut(s)	461
MseI	TTAA	4 cut(s)	915, 1071, 1122, 1149
MslI	CAYNNNNRTG	1 cut(s)	1327
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	3 cut(s)	35, 134, 761
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	800
NarI	GGCGCC	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	8 cut(s)	124, 251, 259, 598, 631, 649, 822, 1081
NlaIII	CATG	2 cut(s)	410, 656
NlaIV	GGNNCC	2 cut(s)	363, 462
NmuCI	GTSAC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	652
PciSI	GCTCTTC	2 cut(s)	400, 464
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PfeI	GAWTC	5 cut(s)	569, 613, 722, 1160, 1205
PflFI	GACNNNGTC	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	760
PkrI	GCNGC	2 cut(s)	491, 1321
PluTI	GGCGCC	1 cut(s)	464
Psp1406I	AACGTT	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	363, 462
PspPI	GGNCC	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	251
PsyI	GACNNNGTC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	1327
SalI	GTCGAC	1 cut(s)	94
SapI	GCTCTTC	2 cut(s)	400, 464
SaqAI	TTAA	4 cut(s)	915, 1071, 1122, 1149
SatI	GCNGC	2 cut(s)	490, 1320
Sau3AI	GATC	8 cut(s)	124, 251, 259, 598, 631, 649, 822, 1081
Sau96I	GGNCC	1 cut(s)	752
SfaNI	GCATC	2 cut(s)	554, 1233
SfoI	GGCGCC	1 cut(s)	462
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	1327
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	2 cut(s)	806, 818
SsiI	CCGC	3 cut(s)	305, 359, 474
SspDI	GGCGCC	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	406, 564
TaaI	ACNGT	2 cut(s)	485, 1300
TaiI	ACGT	4 cut(s)	14, 330, 423, 915
TaqI	TCGA	5 cut(s)	95, 262, 624, 843, 984
TasI	AATT	2 cut(s)	806, 818
TfiI	GAWTC	5 cut(s)	569, 613, 722, 1160, 1205
Tru1I	TTAA	4 cut(s)	915, 1071, 1122, 1149
Tru9I	TTAA	4 cut(s)	915, 1071, 1122, 1149
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	489, 1319
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	735, 846, 878, 1326
TspGWI	ACGGA	2 cut(s)	233, 715
Tth111I	GACNNNGTC	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	95
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.