Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028342.1

Orthogroup ID

OG0005356

Physical Location & Seq

Genomic Coordinates Forward (+)

15039 .. 16340

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028342.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atggcaacaaaaccaaaaaatagtactactcctgggagggagaggagaagtagcacatcaccagctagcctcaccaaaagacccacaaaaccaactactcctgataaatcttcttcaacctcaaactcatcatcgacagcaaaaccagtgccaaactatttgagatcaaccgcaagctcatcacgccagactccttctttgaccaagtccaggtcattaaagaaacatcatgtctctgataatcaagactccaactccccaaagcctacactaaatagaagaagatcccttgacaagccaccatcaccttcaggaccacggaaaatcatctccccaggaagagagtcaagagacccagcacttcggtctaaatctttttcagttaaaagcatctcaaatgctccaaaacccaccagtaaatctgtatctggaaccaaaccacaggcttcgtttgcaaagagtagtggcactagtttgaggagaagcactagtggtatcacttctggttcaagtaagaaggaaagtagaggtactactggtagttcaagagctccaaggagtcgtgacataacacaaattcttaatcttgaagctaatttggaagctttagatcatcatgaagttggagaggtggataagattgagagtattgaggaggacaacagtcaagaccttccggaccctaaattagctgaagaagatcttgatgatcagcagcaacaccatgcttcagatactgatcaagctaatggtcatgacactacttctgttaaagatgcagcagaggaatcaaaagaaaatgtggatgtcaataatgaagaagttactcaagcagagaaaaatattgatggtcaccatgatcaagttgaagaggttaatcacattagcaaagatcatgaaagcaatgacattgatcaccacccagaagagggttcgggtctgacaagcgaggaaacaatagctgaggaggtgatcaaagaaaagaaagaagatgaaaacaagaatgaggtggatatggaagtcgttgatggaggaagcaatgagcttgatccaaaggaagggcaagatggaaatatcaaagaagaagcaaagcctgaggaaccagaggtaacagaaacgccgcaagcggctgctgctactatagggaataacaagaaggaggcggctcctgcatacaatgatgtgattgaggagactgcgagtaagctgatggcccaagagaagaggaggaacaaggtcaaagctttggttggggcttttgagactgtcatagatcatgaatcaggatccaaattaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

433

Amino Acids

46.99

Weight (kDa)

5.52

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10660 AT5G10660 AT5G10660 AT5G10680 AT5G10680 AT5G24880
fragaria_vesca	FvH4_2g36751 FvH4_2g36751 FvH4_2g36751
malus_domestica	MD08G1128300.v1.1 MD15G1107800.v1.1
prunus_persica	Prupe.1G460100_v2.0.a1 Prupe.1G460100_v2.0.a1
pyrus_communis	pycom08g10720 pycom15g09850
rosa_chinensis	RchiOBHm_Chr6g0304991
rosa_laevigata	RLG00000010930
rosa_multiflora	Rmu_co7983124.1_g000001 Rmu_sc0028342.1_g000004 Rmu_sc0039167.1_g000001 Rmu_sc0039168.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163280
rosa_rugosa	Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG448100 Rh6BG452700 Rh6CG461800 Rh6DG448700
rosa_wichuraiana	Rw6G039020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	676
AciI	CCGC	4 cut(s)	171, 1121, 1127, 1163
AclWI	GGATC	4 cut(s)	279, 1043, 1281, 1294
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	3 cut(s)	294, 714, 714
AfaI	GTAC	2 cut(s)	25, 532
AfiI	CCNNNNNNNGG	4 cut(s)	210, 928, 929, 1058
AgsI	TTSAA	5 cut(s)	117, 510, 546, 590, 869
AhlI	ACTAGT	2 cut(s)	470, 488
AjnI	CCWGG	3 cut(s)	31, 209, 334
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	4 cut(s)	238, 345, 1187, 1256
AlwI	GGATC	4 cut(s)	279, 1043, 1281, 1294
AlwNI	CAGNNNCTG	1 cut(s)	737
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	1 cut(s)	1212
ApeKI	GCWGC	4 cut(s)	715, 779, 1130, 1133
ApoI	RAATTY	1 cut(s)	576
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AspS9I	GGNCC	3 cut(s)	314, 679, 1213
AsuHPI	GGTGA	6 cut(s)	51, 64, 297, 845, 908, 982
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	314, 679
AxyI	CCTNAGG	1 cut(s)	1095
BamHI	GGATCC	1 cut(s)	1286
BanII	GRGCYC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	553
BbvCI	CCTCAGC	1 cut(s)	963
BbvI	GCAGC	4 cut(s)	727, 791, 1117, 1120
BccI	CCATC	5 cut(s)	310, 842, 1022, 1061, 1204
BciT130I	CCWGG	3 cut(s)	33, 211, 336
BclI	TGATCA	5 cut(s)	709, 739, 859, 913, 972
BcoDI	GTCTC	4 cut(s)	238, 345, 1187, 1256
BcuI	ACTAGT	2 cut(s)	470, 488
BfaI	CTAG	3 cut(s)	66, 471, 489
BfmI	CTRYAG	1 cut(s)	1140
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	7 cut(s)	716, 780, 1121, 1128, 1131, 1134, 1164
BlsI	GCNGC	7 cut(s)	717, 781, 1122, 1129, 1132, 1135, 1165
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	3 cut(s)	33, 211, 336
Bme18I	GGWCC	2 cut(s)	314, 679
BmgT120I	GGNCC	3 cut(s)	314, 679, 1213
BmiI	GGNNCC	5 cut(s)	433, 681, 1101, 1167, 1288
BmrFI	CCNGG	3 cut(s)	33, 211, 336
BmsI	GCATC	2 cut(s)	399, 766
BmtI	GCTAGC	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	813
BsaBI	GATNNNNATC	1 cut(s)	738
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	4 cut(s)	32, 317, 334, 554
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	210, 928, 929, 1058
Bse1I	ACTGG	3 cut(s)	146, 414, 541
Bse21I	CCTNAGG	1 cut(s)	1095
Bse3DI	GCAATG	2 cut(s)	910, 1045
Bse8I	GATNNNNATC	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	676
BseBI	CCWGG	3 cut(s)	33, 211, 336
BseDI	CCNNGG	4 cut(s)	32, 317, 334, 554
BseGI	GGATG	1 cut(s)	811
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	4 cut(s)	210, 928, 929, 1058
BseMI	GCAATG	2 cut(s)	910, 1045
BseMII	CTCAG	2 cut(s)	954, 1086
BseNI	ACTGG	3 cut(s)	146, 414, 541
BseRI	GAGGAG	6 cut(s)	58, 493, 668, 980, 1205, 1240
BseXI	GCAGC	4 cut(s)	727, 791, 1117, 1120
BseYI	CCCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	1214
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	677
BslI	CCNNNNNNNGG	4 cut(s)	210, 928, 929, 1058
BsmAI	GTCTC	4 cut(s)	238, 345, 1187, 1256
BsnI	GGCC	1 cut(s)	1214
Bso31I	GGTCTC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp13I	TCCGGA	1 cut(s)	676
BspACI	CCGC	4 cut(s)	171, 1121, 1127, 1163
BspANI	GGCC	1 cut(s)	1214
BspCNI	CTCAG	2 cut(s)	955, 1087
BspEI	TCCGGA	1 cut(s)	676
BspHI	TCATGA	4 cut(s)	616, 754, 895, 1276
BspLI	GGNNCC	5 cut(s)	433, 681, 1101, 1167, 1288
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	4 cut(s)	279, 1043, 1281, 1294
BspTNI	GGTCTC	1 cut(s)	345
BsrDI	GCAATG	2 cut(s)	910, 1045
BsrI	ACTGG	3 cut(s)	146, 414, 541
BssECI	CCNNGG	4 cut(s)	32, 317, 334, 554
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	3 cut(s)	33, 211, 336
Bst4CI	ACNGT	2 cut(s)	665, 1267
Bst6I	CTCTTC	4 cut(s)	334, 864, 921, 1217
BstC8I	GCNNGC	3 cut(s)	67, 175, 1125
BstDEI	CTNAG	2 cut(s)	963, 1095
BstDSI	CCRYGG	1 cut(s)	317
BstEII	GGTNACC	1 cut(s)	851
BstF5I	GGATG	1 cut(s)	811
BstMAI	GTCTC	4 cut(s)	238, 345, 1187, 1256
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 452, 1133, 1169
BstNI	CCWGG	3 cut(s)	33, 211, 336
BstPAI	GACNNNNGTC	1 cut(s)	663
BstPI	GGTNACC	1 cut(s)	851
BstSCI	CCNGG	3 cut(s)	31, 209, 334
BstSFI	CTRYAG	1 cut(s)	1140
BstV1I	GCAGC	4 cut(s)	727, 791, 1117, 1120
BstX2I	RGATCY	3 cut(s)	284, 700, 1286
BstYI	RGATCY	3 cut(s)	284, 700, 1286
Bsu36I	CCTNAGG	1 cut(s)	1095
BsuRI	GGCC	1 cut(s)	1214
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	811
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	67, 175, 1125
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	4 cut(s)	616, 754, 895, 1276
Cfr13I	GGNCC	3 cut(s)	314, 679, 1213
Csp6I	GTAC	2 cut(s)	24, 531
CviAII	CATG	7 cut(s)	230, 617, 725, 755, 857, 896, 1277
CviQI	GTAC	2 cut(s)	24, 531
DdeI	CTNAG	2 cut(s)	963, 1095
Eam1104I	CTCTTC	4 cut(s)	334, 864, 921, 1217
EarI	CTCTTC	4 cut(s)	334, 864, 921, 1217
Ecl136II	GAGCTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	314, 679
Eco53kI	GAGCTC	1 cut(s)	551
Eco57I	CTGAAG	3 cut(s)	294, 714, 714
Eco81I	CCTNAGG	1 cut(s)	1095
Eco91I	GGTNACC	1 cut(s)	851
EcoICRI	GAGCTC	1 cut(s)	551
EcoO65I	GGTNACC	1 cut(s)	851
EcoRII	CCWGG	3 cut(s)	31, 209, 334
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	7 cut(s)	233, 620, 728, 758, 860, 899, 1280
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	7 cut(s)	229, 616, 724, 754, 856, 895, 1276
FbaI	TGATCA	5 cut(s)	709, 739, 859, 913, 972
Fnu4HI	GCNGC	7 cut(s)	716, 780, 1121, 1128, 1131, 1134, 1164
FokI	GGATG	1 cut(s)	818
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	7 cut(s)	716, 780, 1121, 1128, 1131, 1134, 1164
FspBI	CTAG	3 cut(s)	66, 471, 489
GluI	GCNGC	7 cut(s)	716, 780, 1121, 1128, 1131, 1134, 1164
GsaI	CCCAGC	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	1214
HapII	CCGG	1 cut(s)	677
Hin1II	CATG	7 cut(s)	233, 620, 728, 758, 860, 899, 1280
HindIII	AAGCTT	2 cut(s)	603, 1242
HinfI	GANTC	6 cut(s)	190, 248, 344, 559, 788, 1280
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	6 cut(s)	51, 64, 297, 845, 908, 982
Hpy188I	TCNGA	3 cut(s)	238, 733, 942
HpyAV	CCTTC	6 cut(s)	204, 318, 511, 683, 1052, 1150
HpyCH4III	ACNGT	2 cut(s)	665, 1267
HpyCH4V	TGCA	3 cut(s)	455, 779, 1172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 452, 1133, 1169
HpyF3I	CTNAG	2 cut(s)	963, 1095
Hsp92II	CATG	7 cut(s)	233, 620, 728, 758, 860, 899, 1280
Kpn2I	TCCGGA	1 cut(s)	676
Ksp22I	TGATCA	5 cut(s)	709, 739, 859, 913, 972
LmnI	GCTCC	3 cut(s)	406, 556, 1171
Lsp1109I	GCAGC	4 cut(s)	727, 791, 1117, 1120
LweI	GCATC	2 cut(s)	399, 766
MaeI	CTAG	3 cut(s)	66, 471, 489
MaeIII	GTNAC	4 cut(s)	563, 823, 851, 1108
MflI	RGATCY	3 cut(s)	284, 700, 1286
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	5 cut(s)	576, 595, 686, 1292, 1297
MlyI	GAGTC	4 cut(s)	184, 242, 353, 568
MmeI	TCCRAC	2 cut(s)	276, 604
MroI	TCCGGA	1 cut(s)	676
MseI	TTAA	7 cut(s)	218, 384, 582, 771, 876, 1295, 1300
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	3 cut(s)	33, 211, 336
MvaI	CCWGG	3 cut(s)	33, 211, 336
MwoI	GCNNNNNNNGC	4 cut(s)	183, 452, 1133, 1169
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	7 cut(s)	233, 620, 728, 758, 860, 899, 1280
NlaIV	GGNNCC	5 cut(s)	433, 681, 1101, 1167, 1288
NmuCI	GTSAC	2 cut(s)	563, 851
PagI	TCATGA	4 cut(s)	616, 754, 895, 1276
PfeI	GAWTC	2 cut(s)	788, 1280
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	7 cut(s)	717, 781, 1122, 1129, 1132, 1135, 1165
PleI	GAGTC	4 cut(s)	184, 242, 352, 567
PpsI	GAGTC	4 cut(s)	184, 242, 352, 567
PshAI	GACNNNNGTC	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	553
Psp6I	CCWGG	3 cut(s)	31, 209, 334
PspEI	GGTNACC	1 cut(s)	851
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	3 cut(s)	31, 209, 334
PspN4I	GGNNCC	5 cut(s)	433, 681, 1101, 1167, 1288
PspPI	GGNCC	3 cut(s)	314, 679, 1213
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	3 cut(s)	284, 700, 1286
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	2 cut(s)	25, 532
RsaNI	GTAC	2 cut(s)	24, 531
SacI	GAGCTC	1 cut(s)	553
SaqAI	TTAA	7 cut(s)	218, 384, 582, 771, 876, 1295, 1300
SatI	GCNGC	7 cut(s)	716, 780, 1121, 1128, 1131, 1134, 1164
Sau96I	GGNCC	3 cut(s)	314, 679, 1213
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	4 cut(s)	184, 242, 353, 568
ScrFI	CCNGG	3 cut(s)	33, 211, 336
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	399, 766
SfcI	CTRYAG	1 cut(s)	1140
SinI	GGWCC	2 cut(s)	314, 679
SmlI	CTYRAG	1 cut(s)	828
SmoI	CTYRAG	1 cut(s)	828
SpeI	ACTAGT	2 cut(s)	470, 488
Sse9I	AATT	5 cut(s)	576, 595, 686, 1292, 1297
SsiI	CCGC	4 cut(s)	171, 1121, 1127, 1163
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	3 cut(s)	66, 471, 489
SstI	GAGCTC	1 cut(s)	553
StyD4I	CCNGG	3 cut(s)	31, 209, 334
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	2 cut(s)	665, 1267
TaqI	TCGA	1 cut(s)	134
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	576, 595, 686, 1292, 1297
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	3 cut(s)	1123, 1130, 1166
TfiI	GAWTC	2 cut(s)	788, 1280
Tru1I	TTAA	7 cut(s)	218, 384, 582, 771, 876, 1295, 1300
Tru9I	TTAA	7 cut(s)	218, 384, 582, 771, 876, 1295, 1300
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	2 cut(s)	563, 851
TseI	GCWGC	4 cut(s)	715, 779, 1130, 1133
Tsp45I	GTSAC	2 cut(s)	563, 851
TspDTI	ATGAA	5 cut(s)	633, 831, 912, 1008, 1293
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	153
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	314, 679
XapI	RAATTY	1 cut(s)	576
XspI	CTAG	3 cut(s)	66, 471, 489
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.