AT5G10680

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005356
Physical Location & Seq
Forward (+)
3373224 .. 3374414
1191 bp
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UTR
Exon/CDS
Intron
AT5G10680.1

Sequence Viewer

Length: 726 bp
ATGGAGACTAATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCGATGTGGCCCGAAAATGTTGGACCTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCTATAGATTTAGACATGTTGAAAGAAGTCACAATCGAAGAGAAACCGACCATTGCAGATTTGACACGGTTACCAGAACTATTGAGTTTGACTCAGCAAGGCTCCTCTCAACTAACCAACCTCGTGAAACAATGGGAGTATATGCAAAACAACGCGGTTCGGCTATTAAGAGAAGAGCTTAAGAATCTCGATAGACAGAGAGAAGAAGCTGAGGCAAAAGAGTTGAAGATCATTGAGGAGTATAACTTTGAGAGCCACCAGCCTGAGTATGTTTCGGTTTTGGATGAGACGAGTGATTTGTTCCGCGGGTTTAGGCAGAAGAGACGAGAAGTGTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGATAGCAAGAAAGTTGATGATGAGGAAAATAGCGAGACAGTTGCTACTACTACGGATATGAATGAAGCTGTGAATTTCGAAAAAAGTAAACAAGAGGAACAGGAAGAAGCAGAAGTTAAAGAGGAAGAGAGCGAAAGCAGCAGAGTGAAAGAAGAAACAGCCGAAACAAAGGCTCAAATAGAAGAATTACCAGAGGAAGGAACAAAGAAGGAAGGGGTGCAAGGGAAGAAGGAATCTCCAACAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010119 GO:0010646 GO:0010648 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070297 GO:0070298 GO:0070301 GO:0070887 GO:0071216 GO:0071219 GO:0071236 GO:0071241 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0071944 GO:0090333 GO:0097237 GO:0097366 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902531 GO:1902532 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c HisKA Response_reg

Protein Analysis

241

Amino Acids

27.97

Weight (kDa)

4.42

Isoelectric Point (pI)

60.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 112
AccII CGCG 2 cut(s) 260, 411
AciI CCGC 3 cut(s) 260, 409, 411
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 674
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 3 cut(s) 91, 127, 331
AluBI AGCT 4 cut(s) 77, 283, 314, 545
AluI AGCT 4 cut(s) 77, 283, 314, 545
Alw26I GTCTC 3 cut(s) 386, 421, 506
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 615
ApoI RAATTY 1 cut(s) 550
ArsI GACNNNNNNTTYG 2 cut(s) 385, 417
AspS9I GGNCC 2 cut(s) 54, 68
AsuII TTCGAA 1 cut(s) 555
AvaII GGWCC 1 cut(s) 68
BauI CACGAG 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 627
BcgI CGANNNNNNTGC 4 cut(s) 86, 120, 500, 534
BcoDI GTCTC 3 cut(s) 386, 421, 506
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 112
BglII AGATCT 1 cut(s) 462
BisI GCNGC 1 cut(s) 616
BlsI GCNGC 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 54, 68
BmiI GGNNCC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 181, 213
Bpu10I CCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 409
Bsc4I CCNNNNNNNGG 1 cut(s) 674
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 2 cut(s) 34, 394
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 3 cut(s) 212, 306, 360
BseRI GAGGAG 3 cut(s) 199, 356, 485
BseXI GCAGC 1 cut(s) 627
Bsh1236I CGCG 2 cut(s) 260, 411
BshFI GGCC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 3 cut(s) 386, 421, 506
BsmBI CGTCTC 2 cut(s) 386, 421
BsnI GGCC 1 cut(s) 55
Bsp119I TTCGAA 1 cut(s) 555
Bsp143I GATC 2 cut(s) 333, 462
BspACI CCGC 3 cut(s) 260, 409, 411
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 3 cut(s) 211, 307, 361
BspFNI CGCG 2 cut(s) 260, 411
BspLI GGNNCC 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 555
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 2 cut(s) 333, 462
BssSI CACGAG 1 cut(s) 227
Bst2BI CACGAG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 87, 174, 517
Bst6I CTCTTC 4 cut(s) 138, 273, 419, 597
BstAFI CTTAAG 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 555
BstDEI CTNAG 3 cut(s) 198, 315, 369
BstDSI CCRYGG 1 cut(s) 409
BstEII GGTNACC 1 cut(s) 174
BstF5I GGATG 2 cut(s) 34, 394
BstFNI CGCG 2 cut(s) 260, 411
BstKTI GATC 2 cut(s) 336, 465
BstMAI GTCTC 3 cut(s) 386, 421, 506
BstMBI GATC 2 cut(s) 333, 462
BstMWI GCNNNNNNNGC 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 124
BstPI GGTNACC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 2 cut(s) 260, 411
BstV1I GCAGC 1 cut(s) 627
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BsuRI GGCC 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 2 cut(s) 34, 394
BveI ACCTGC 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 54, 68
Cfr42I CCGCGG 1 cut(s) 412
CviAII CATG 1 cut(s) 121
DdeI CTNAG 3 cut(s) 198, 315, 369
DpnI GATC 2 cut(s) 335, 464
DpnII GATC 2 cut(s) 333, 462
Eam1104I CTCTTC 4 cut(s) 138, 273, 419, 597
EarI CTCTTC 4 cut(s) 138, 273, 419, 597
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 174
EcoO65I GGTNACC 1 cut(s) 174
Esp3I CGTCTC 2 cut(s) 386, 421
FaeI CATG 1 cut(s) 124
FaiI YATR 9 cut(s) 110, 122, 246, 248, 348, 375, 468, 536, 724
FatI CATG 1 cut(s) 120
FauI CCCGC 1 cut(s) 404
Fnu4HI GCNGC 1 cut(s) 616
FokI GGATG 2 cut(s) 41, 401
Fsp4HI GCNGC 1 cut(s) 616
GluI GCNGC 1 cut(s) 616
HaeIII GGCC 1 cut(s) 55
Hin1II CATG 1 cut(s) 124
HinfI GANTC 3 cut(s) 196, 289, 710
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 97, 229, 293
Hpy8I GTNNAC 1 cut(s) 566
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 668, 679, 683, 700
HpyCH4III ACNGT 3 cut(s) 87, 174, 517
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 161, 250, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 615
HpyF3I CTNAG 3 cut(s) 198, 315, 369
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 124
KspI CCGCGG 1 cut(s) 412
Kzo9I GATC 2 cut(s) 333, 462
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 84, 117, 192, 377, 381, 563, 681
Lsp1109I GCAGC 1 cut(s) 627
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 133, 174
MalI GATC 2 cut(s) 335, 464
MboI GATC 2 cut(s) 333, 462
MflI RGATCY 1 cut(s) 462
MluCI AATT 2 cut(s) 550, 662
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 46
MseI TTAA 3 cut(s) 272, 285, 594
MspA1I CMGCKG 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 284
MvnI CGCG 2 cut(s) 260, 411
MwoI GCNNNNNNNGC 1 cut(s) 615
NdeII GATC 2 cut(s) 333, 462
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 124
NspV TTCGAA 1 cut(s) 555
PciI ACATGT 1 cut(s) 120
PciSI GCTCTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 289, 710
PkrI GCNGC 1 cut(s) 617
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PscI ACATGT 1 cut(s) 120
PspEI GGTNACC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 54, 68
PsuI RGATCY 1 cut(s) 462
SacII CCGCGG 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 272, 285, 594
SatI GCNGC 1 cut(s) 616
Sau3AI GATC 2 cut(s) 333, 462
Sau96I GGNCC 2 cut(s) 54, 68
SchI GAGTC 1 cut(s) 190
SetI ASST 8 cut(s) 73, 79, 96, 106, 228, 285, 316, 547
SfcI CTRYAG 1 cut(s) 108
Sfr303I CCGCGG 1 cut(s) 412
SfuI TTCGAA 1 cut(s) 555
SgrBI CCGCGG 1 cut(s) 412
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 550, 662
SsiI CCGC 3 cut(s) 260, 409, 411
TaaI ACNGT 3 cut(s) 87, 174, 517
TaiI ACGT 1 cut(s) 96
TaqI TCGA 7 cut(s) 33, 47, 96, 141, 294, 444, 555
TasI AATT 2 cut(s) 550, 662
TfiI GAWTC 2 cut(s) 289, 710
Tru1I TTAA 3 cut(s) 272, 285, 594
Tru9I TTAA 3 cut(s) 272, 285, 594
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 615
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 551, 555
TspGWI ACGGA 1 cut(s) 545
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.