Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039168.1

Orthogroup ID

OG0005356

Physical Location & Seq

Genomic Coordinates Forward (+)

670 .. 1465

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039168.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 796 bp

atggcaacaaaaccaaaaaatagtactactcctgggagggagaggagaagtagcacatcaccagctagcctcaccaaaagacccacaaaaccaactactcctgataaatcttcttcaacctcaaactcatcatcgacagcaaaaccagtgccaaactatttgagatcaaccgcaagctcatcacgccagactccttctttgaccaagtccaggtcattaaagaaacatcatgtctctgataatcaagactccaactccccaaagcctacactaaatagaagaagatcccttgacaagccaccatcaccttcaggaccacggaaaatcatctccccaggaagagagtcaagagacccagcacttcggtctaaatctttttcagttaaaagcatctcaaatgctccaaaacccaccagtaaatctgtatctggaaccaaaccacaggcttcgtttgcaaagagtagtggcactagtttgaggagaagcactagtggtatcacttctggttcaagtaagaaggaaagtagaggtactactggtagttcaagagctccaaggagtcgtgacataacacaaattcttaatcttgaagctaatttggaagctttagatcatcatgaagttggagaggtggataagattgagagtattgaggaggacaacagtcaagaccttccggaccctaaattagctgaagaagatcttgatgatcagcagcaacaccatgcttcagatactgatcaagctaatggtcatgacactacttctgttaaagatgcagcagaggaatcaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

265

Amino Acids

28.49

Weight (kDa)

9.88

Isoelectric Point (pI)

68.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10660 AT5G10660 AT5G10660 AT5G10680 AT5G10680 AT5G24880
fragaria_vesca	FvH4_2g36751 FvH4_2g36751 FvH4_2g36751
malus_domestica	MD08G1128300.v1.1 MD15G1107800.v1.1
prunus_persica	Prupe.1G460100_v2.0.a1 Prupe.1G460100_v2.0.a1
pyrus_communis	pycom08g10720 pycom15g09850
rosa_chinensis	RchiOBHm_Chr6g0304991
rosa_laevigata	RLG00000010930
rosa_multiflora	Rmu_co7983124.1_g000001 Rmu_sc0028342.1_g000004 Rmu_sc0039167.1_g000001 Rmu_sc0039168.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163280
rosa_rugosa	Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG448100 Rh6BG452700 Rh6CG461800 Rh6DG448700
rosa_wichuraiana	Rw6G039020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	676
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	3 cut(s)	294, 714, 714
AfaI	GTAC	2 cut(s)	25, 532
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	4 cut(s)	117, 510, 546, 590
AhlI	ACTAGT	2 cut(s)	470, 488
AjnI	CCWGG	3 cut(s)	31, 209, 334
AluBI	AGCT	7 cut(s)	65, 177, 551, 593, 605, 692, 746
AluI	AGCT	7 cut(s)	65, 177, 551, 593, 605, 692, 746
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	238, 345
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	737
Aor13HI	TCCGGA	1 cut(s)	676
ApeKI	GCWGC	2 cut(s)	715, 779
ApoI	RAATTY	1 cut(s)	576
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AspS9I	GGNCC	2 cut(s)	314, 679
AsuHPI	GGTGA	3 cut(s)	51, 64, 297
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	314, 679
BanII	GRGCYC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	727, 791
BccI	CCATC	1 cut(s)	310
BciT130I	CCWGG	3 cut(s)	33, 211, 336
BclI	TGATCA	2 cut(s)	709, 739
BcoDI	GTCTC	2 cut(s)	238, 345
BcuI	ACTAGT	2 cut(s)	470, 488
BfaI	CTAG	3 cut(s)	66, 471, 489
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	2 cut(s)	716, 780
BlsI	GCNGC	2 cut(s)	717, 781
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	3 cut(s)	33, 211, 336
Bme18I	GGWCC	2 cut(s)	314, 679
BmgT120I	GGNCC	2 cut(s)	314, 679
BmiI	GGNNCC	2 cut(s)	433, 681
BmrFI	CCNGG	3 cut(s)	33, 211, 336
BmsI	GCATC	2 cut(s)	399, 766
BmtI	GCTAGC	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	663
BsaBI	GATNNNNATC	1 cut(s)	738
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	4 cut(s)	32, 317, 334, 554
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	3 cut(s)	146, 414, 541
Bse8I	GATNNNNATC	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	676
BseBI	CCWGG	3 cut(s)	33, 211, 336
BseDI	CCNNGG	4 cut(s)	32, 317, 334, 554
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseNI	ACTGG	3 cut(s)	146, 414, 541
BseRI	GAGGAG	3 cut(s)	58, 493, 668
BseXI	GCAGC	2 cut(s)	727, 791
BseYI	CCCAGC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	238, 345
Bso31I	GGTCTC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp13I	TCCGGA	1 cut(s)	676
Bsp143I	GATC	6 cut(s)	164, 284, 610, 700, 709, 739
BspACI	CCGC	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	676
BspHI	TCATGA	2 cut(s)	616, 754
BspLI	GGNNCC	2 cut(s)	433, 681
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	345
BsrI	ACTGG	3 cut(s)	146, 414, 541
BssECI	CCNNGG	4 cut(s)	32, 317, 334, 554
BssMI	GATC	6 cut(s)	164, 284, 610, 700, 709, 739
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	3 cut(s)	33, 211, 336
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	67, 175
BstDSI	CCRYGG	1 cut(s)	317
BstKTI	GATC	6 cut(s)	167, 287, 613, 703, 712, 742
BstMAI	GTCTC	2 cut(s)	238, 345
BstMBI	GATC	6 cut(s)	164, 284, 610, 700, 709, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 452
BstNI	CCWGG	3 cut(s)	33, 211, 336
BstPAI	GACNNNNGTC	1 cut(s)	663
BstSCI	CCNGG	3 cut(s)	31, 209, 334
BstV1I	GCAGC	2 cut(s)	727, 791
BstX2I	RGATCY	2 cut(s)	284, 700
BstYI	RGATCY	2 cut(s)	284, 700
BtgI	CCRYGG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	67, 175
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	2 cut(s)	616, 754
Cfr13I	GGNCC	2 cut(s)	314, 679
Csp6I	GTAC	2 cut(s)	24, 531
CviAII	CATG	4 cut(s)	230, 617, 725, 755
CviQI	GTAC	2 cut(s)	24, 531
DpnI	GATC	6 cut(s)	166, 286, 612, 702, 711, 741
DpnII	GATC	6 cut(s)	164, 284, 610, 700, 709, 739
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	314, 679
Eco53kI	GAGCTC	1 cut(s)	551
Eco57I	CTGAAG	3 cut(s)	294, 714, 714
EcoICRI	GAGCTC	1 cut(s)	551
EcoRII	CCWGG	3 cut(s)	31, 209, 334
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	4 cut(s)	233, 620, 728, 758
FaiI	YATR	5 cut(s)	231, 569, 618, 726, 756
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	4 cut(s)	229, 616, 724, 754
FbaI	TGATCA	2 cut(s)	709, 739
Fnu4HI	GCNGC	2 cut(s)	716, 780
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	2 cut(s)	716, 780
FspBI	CTAG	3 cut(s)	66, 471, 489
GluI	GCNGC	2 cut(s)	716, 780
GsaI	CCCAGC	1 cut(s)	359
HapII	CCGG	1 cut(s)	677
Hin1II	CATG	4 cut(s)	233, 620, 728, 758
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	5 cut(s)	190, 248, 344, 559, 788
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	3 cut(s)	51, 64, 297
Hpy188I	TCNGA	2 cut(s)	238, 733
HpyAV	CCTTC	4 cut(s)	204, 318, 511, 683
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4V	TGCA	2 cut(s)	455, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 452
Hsp92II	CATG	4 cut(s)	233, 620, 728, 758
Kpn2I	TCCGGA	1 cut(s)	676
Ksp22I	TGATCA	2 cut(s)	709, 739
Kzo9I	GATC	6 cut(s)	164, 284, 610, 700, 709, 739
LmnI	GCTCC	2 cut(s)	406, 556
Lsp1109I	GCAGC	2 cut(s)	727, 791
LweI	GCATC	2 cut(s)	399, 766
MaeI	CTAG	3 cut(s)	66, 471, 489
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	6 cut(s)	166, 286, 612, 702, 711, 741
MboI	GATC	6 cut(s)	164, 284, 610, 700, 709, 739
MboII	GAAGA	7 cut(s)	102, 105, 291, 294, 351, 707, 710
MflI	RGATCY	2 cut(s)	284, 700
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	3 cut(s)	576, 595, 686
MlyI	GAGTC	4 cut(s)	184, 242, 353, 568
MmeI	TCCRAC	2 cut(s)	276, 604
MroI	TCCGGA	1 cut(s)	676
MseI	TTAA	4 cut(s)	218, 384, 582, 771
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	3 cut(s)	33, 211, 336
MvaI	CCWGG	3 cut(s)	33, 211, 336
MwoI	GCNNNNNNNGC	2 cut(s)	183, 452
NdeII	GATC	6 cut(s)	164, 284, 610, 700, 709, 739
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	4 cut(s)	233, 620, 728, 758
NlaIV	GGNNCC	2 cut(s)	433, 681
NmuCI	GTSAC	1 cut(s)	563
PagI	TCATGA	2 cut(s)	616, 754
PfeI	GAWTC	1 cut(s)	788
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	717, 781
PleI	GAGTC	4 cut(s)	184, 242, 352, 567
PpsI	GAGTC	4 cut(s)	184, 242, 352, 567
PshAI	GACNNNNGTC	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	553
Psp6I	CCWGG	3 cut(s)	31, 209, 334
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	3 cut(s)	31, 209, 334
PspN4I	GGNNCC	2 cut(s)	433, 681
PspPI	GGNCC	2 cut(s)	314, 679
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	2 cut(s)	284, 700
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	2 cut(s)	25, 532
RsaNI	GTAC	2 cut(s)	24, 531
SacI	GAGCTC	1 cut(s)	553
SaqAI	TTAA	4 cut(s)	218, 384, 582, 771
SatI	GCNGC	2 cut(s)	716, 780
Sau3AI	GATC	6 cut(s)	164, 284, 610, 700, 709, 739
Sau96I	GGNCC	2 cut(s)	314, 679
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	4 cut(s)	184, 242, 353, 568
ScrFI	CCNGG	3 cut(s)	33, 211, 336
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	399, 766
SinI	GGWCC	2 cut(s)	314, 679
SpeI	ACTAGT	2 cut(s)	470, 488
Sse9I	AATT	3 cut(s)	576, 595, 686
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	3 cut(s)	66, 471, 489
SstI	GAGCTC	1 cut(s)	553
StyD4I	CCNGG	3 cut(s)	31, 209, 334
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	1 cut(s)	665
TaqI	TCGA	1 cut(s)	134
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	3 cut(s)	576, 595, 686
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	4 cut(s)	218, 384, 582, 771
Tru9I	TTAA	4 cut(s)	218, 384, 582, 771
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	2 cut(s)	715, 779
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	153
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	314, 679
XapI	RAATTY	1 cut(s)	576
XspI	CTAG	3 cut(s)	66, 471, 489
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.