Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005356

Physical Location & Seq

Genomic Coordinates Reverse (-)

38486483 .. 38490790

Gene Structure 4308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G460100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCAACAAAAGCTAAAGATAGCACTACTTCAGGGAAGGAGCTGAAGAAGAGCACATCAGCTTTAAACTCCCACACAAACCACACCAAAAGAGTCACCAAGTCTTCATCTTCTGCAGGCACTGAGAAAGCAACCTCTTCAACCTCTTCAACCTCTTCAACCTCTTCAACCTCTTCAACCTCAACAACAAAGCAAGTCCCAAACTATCTGAGGCCTACTTTGAGTGCCTCAAGACATGAAAATTCTTCCAAGTCATCATTAGCTGGGAGCAAGAAACATGGCTCTGAAGACTCTGCATCATCTCAAAAGCCTACACTGAGTAGAAGAAGATCTTTTGACAAGCCACCATCACCGTCAAGACTACGCAAGTCACTGATATCACCAGGAAGGGACACATCGCTACGATCTTCATCGTTTACAGCGAAAAGCTCCAATGTCCCGAAACCCAGTATAGATAGGTCTAATTCGAAGACGGCTAGAGCCGGAAAGCCACAGCTTTTGTATGCAAAGAGTGTGAAGAAGAGCAGTACAAGTGGTTCAGCCAAGAAGGAAAGTACAGCTTCAACAAGACCTCCAAAGAGTGAGGACATAACACAAACACTCGATCTTGAAGCCGATCTAGAGGCTATAGAGTCTTTGGATCATCAAGAGGTTGAAGAGGTAGGTATGATTGAGAGTGAGGAACATGAAAAGGTGGTTCTTCCAGACCCAAAAGTTGAAGAGAAGGAGCAAGTTGATGATCATGGTGCAGCTGTAGAAGCTGAAGCTAATGGCGGCGAGGATGAGAAGCTCAAGACTAGTGACAGTTCTACTGTTAATGCAGAGGAATTGCAGGAAACTGTGGAGGAAAGAAATGAAGAAAGTGGAAATGCATTGGTCCAAGAAGAGAAGCCTGCAGATAATGAACAACATCAAGGGGAAGATAATCAGAACAAATTAGATGAAAGCAGTGAGGCTCAACCAGAAGAGGGTTTGGCAAGTGAGGAAACAAAAGTTGAGGTGAAAGAAGATAAAGGAAAAGAGAATGAAGAAGATGGTGATGCAGTGGAGGAAAGCAAGAATGTTGAGGACATGGCCTTGGATGAGAAGGAAGGGATTGCATTGAAGGAAGGGGAAGAAAAAGCTGATGGGGGAATTGAAGAAGCAAAGCCTGCAGAGGCTGCAGAGGCTGCAGAGGCTGCAGAGGCTGCTGAGGCTGCTGAGGTTGCTGAGGCAGCTGAGGCAGCTGAGGGAGCAGAGGAAACAGCCAAGCCAAGCCAAACAAGCGAGGGATCACAAGGAGGGAAAAAGGACTCTGCTCCTGCATACAATGATGTGATTGAGGAGACTGCAAGCAAGTTGCTGGAGAAAAGGAAGAACAAGGTGAAAGCATTGGTTGGGGCATTTGAGACTGTGATAGATTATGAATCAGGATCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

474

Amino Acids

50.33

Weight (kDa)

4.82

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10660 AT5G10660 AT5G10660 AT5G10680 AT5G10680 AT5G24880
fragaria_vesca	FvH4_2g36751 FvH4_2g36751 FvH4_2g36751
malus_domestica	MD08G1128300.v1.1 MD15G1107800.v1.1
prunus_persica	Prupe.1G460100_v2.0.a1 Prupe.1G460100_v2.0.a1
pyrus_communis	pycom08g10720 pycom15g09850
rosa_chinensis	RchiOBHm_Chr6g0304991
rosa_laevigata	RLG00000010930
rosa_multiflora	Rmu_co7983124.1_g000001 Rmu_sc0028342.1_g000004 Rmu_sc0039167.1_g000001 Rmu_sc0039168.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163280
rosa_rugosa	Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG448100 Rh6BG452700 Rh6CG461800 Rh6DG448700
rosa_wichuraiana	Rw6G039020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	774
AclWI	GGATC	4 cut(s)	648, 1279, 1407, 1420
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	4 cut(s)	15, 65, 306, 783
AfaI	GTAC	2 cut(s)	529, 556
AfiI	CCNNNNNNNGG	1 cut(s)	968
AhlI	ACTAGT	1 cut(s)	797
AjnI	CCWGG	1 cut(s)	382
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	1319, 1382
AlwI	GGATC	4 cut(s)	648, 1279, 1407, 1420
AlwNI	CAGNNNCTG	5 cut(s)	122, 1160, 1169, 1178, 1187
AoxI	GGCC	2 cut(s)	212, 1074
ApeKI	GCWGC	8 cut(s)	749, 1160, 1169, 1178, 1187, 1196, 1214, 1223
ApoI	RAATTY	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	877
AsuHPI	GGTGA	6 cut(s)	88, 342, 372, 1012, 1049, 1375
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	877
BamHI	GGATCC	1 cut(s)	1412
BbsI	GAAGAC	3 cut(s)	96, 294, 476
Bbv12I	GWGCWC	1 cut(s)	56
BbvCI	CCTCAGC	5 cut(s)	1191, 1200, 1209, 1218, 1227
BbvI	GCAGC	8 cut(s)	761, 1147, 1156, 1165, 1174, 1183, 1226, 1235
BccI	CCATC	3 cut(s)	355, 1028, 1121
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	1 cut(s)	384
BclI	TGATCA	1 cut(s)	739
BcoDI	GTCTC	2 cut(s)	1319, 1382
BcuI	ACTAGT	1 cut(s)	797
BfaI	CTAG	3 cut(s)	477, 620, 798
BfmI	CTRYAG	8 cut(s)	114, 627, 753, 894, 1152, 1161, 1170, 1179
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	9 cut(s)	750, 775, 1161, 1170, 1179, 1188, 1197, 1215, 1224
BlsI	GCNGC	9 cut(s)	751, 776, 1162, 1171, 1180, 1189, 1198, 1216, 1225
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	877
BmiI	GGNNCC	1 cut(s)	1414
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	305, 1030
BmuI	ACTGGG	1 cut(s)	441
BpiI	GAAGAC	3 cut(s)	96, 294, 476
BpmI	CTGGAG	1 cut(s)	1364
Bpu10I	CCTNAGC	5 cut(s)	1191, 1200, 1209, 1218, 1227
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	2 cut(s)	214, 776
BsaBI	GATNNNNATC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	1077
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	968
Bse1I	ACTGG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	1077
BseGI	GGATG	2 cut(s)	787, 1087
BseJI	GATNNNNATC	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	968
BseMII	CTCAG	8 cut(s)	114, 200, 308, 1182, 1191, 1200, 1209, 1218
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	1337
BseXI	GCAGC	8 cut(s)	761, 1147, 1156, 1165, 1174, 1183, 1226, 1235
BseYI	CCCAGC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	214, 1076
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	3 cut(s)	182, 404, 422
BslI	CCNNNNNNNGG	1 cut(s)	968
BsmAI	GTCTC	2 cut(s)	1319, 1382
BsmFI	GGGAC	3 cut(s)	182, 404, 422
BsnI	GGCC	2 cut(s)	214, 1076
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	8 cut(s)	329, 404, 604, 616, 640, 739, 1271, 1412
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	2 cut(s)	214, 1076
BspCNI	CTCAG	8 cut(s)	115, 201, 309, 1183, 1192, 1201, 1210, 1219
BspLI	GGNNCC	1 cut(s)	1414
BspMAI	CTGCAG	6 cut(s)	118, 898, 1156, 1165, 1174, 1183
BspPI	GGATC	4 cut(s)	648, 1279, 1407, 1420
BspQI	GCTCTTC	2 cut(s)	44, 515
BspT104I	TTCGAA	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	1077
BssMI	GATC	8 cut(s)	329, 404, 604, 616, 640, 739, 1271, 1412
BssT1I	CCWWGG	1 cut(s)	1077
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	5 cut(s)	354, 806, 814, 841, 1393
BstAPI	GCANNNNNTGC	5 cut(s)	1151, 1160, 1169, 1178, 1187
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	4 cut(s)	118, 894, 1152, 1333
BstDEI	CTNAG	8 cut(s)	123, 209, 317, 1191, 1200, 1209, 1218, 1227
BstF5I	GGATG	2 cut(s)	787, 1087
BstKTI	GATC	8 cut(s)	332, 407, 607, 619, 643, 742, 1274, 1415
BstMAI	GTCTC	2 cut(s)	1319, 1382
BstMBI	GATC	8 cut(s)	329, 404, 604, 616, 640, 739, 1271, 1412
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	8 cut(s)	114, 627, 753, 894, 1152, 1161, 1170, 1179
BstV1I	GCAGC	8 cut(s)	761, 1147, 1156, 1165, 1174, 1183, 1226, 1235
BstV2I	GAAGAC	3 cut(s)	96, 294, 476
BstX2I	RGATCY	2 cut(s)	329, 1412
BstYI	RGATCY	2 cut(s)	329, 1412
BsuRI	GGCC	2 cut(s)	214, 1076
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	787, 1087
BtsI	GCAGTG	2 cut(s)	955, 1050
BtsIMutI	CAGTG	5 cut(s)	120, 314, 371, 955, 1050
Cac8I	GCNNGC	4 cut(s)	118, 894, 1152, 1333
CaiI	CAGNNNCTG	5 cut(s)	122, 1160, 1169, 1178, 1187
Cfr13I	GGNCC	1 cut(s)	877
Csp6I	GTAC	2 cut(s)	528, 555
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	5 cut(s)	236, 278, 686, 743, 1072
CviQI	GTAC	2 cut(s)	528, 555
DdeI	CTNAG	8 cut(s)	123, 209, 317, 1191, 1200, 1209, 1218, 1227
DpnI	GATC	8 cut(s)	331, 406, 606, 618, 642, 741, 1273, 1414
DpnII	GATC	8 cut(s)	329, 404, 604, 616, 640, 739, 1271, 1412
DraI	TTTAAA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	1077
Eco147I	AGGCCT	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	4 cut(s)	15, 65, 306, 783
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	1077
EcoT22I	ATGCAT	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	1077
FaeI	CATG	5 cut(s)	239, 281, 689, 746, 1075
FalI	AAGNNNNNCTT	4 cut(s)	316, 348, 544, 576
FaqI	GGGAC	3 cut(s)	182, 404, 422
FatI	CATG	5 cut(s)	235, 277, 685, 742, 1071
FbaI	TGATCA	1 cut(s)	739
Fnu4HI	GCNGC	9 cut(s)	750, 775, 1161, 1170, 1179, 1188, 1197, 1215, 1224
FokI	GGATG	2 cut(s)	794, 1094
Fsp4HI	GCNGC	9 cut(s)	750, 775, 1161, 1170, 1179, 1188, 1197, 1215, 1224
FspBI	CTAG	3 cut(s)	477, 620, 798
GluI	GCNGC	9 cut(s)	750, 775, 1161, 1170, 1179, 1188, 1197, 1215, 1224
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	1364
HaeIII	GGCC	2 cut(s)	214, 1076
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	5 cut(s)	239, 281, 689, 746, 1075
HinfI	GANTC	5 cut(s)	93, 290, 632, 1292, 1406
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	6 cut(s)	88, 342, 372, 1012, 1049, 1375
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	3 cut(s)	210, 286, 930
Hpy188III	TCNNGA	9 cut(s)	231, 357, 439, 608, 620, 647, 704, 793, 1410
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	8 cut(s)	31, 381, 541, 718, 1081, 1085, 1099, 1103
HpyCH4III	ACNGT	5 cut(s)	354, 806, 814, 841, 1393
HpyF3I	CTNAG	8 cut(s)	123, 209, 317, 1191, 1200, 1209, 1218, 1227
Hsp92II	CATG	5 cut(s)	239, 281, 689, 746, 1075
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	8 cut(s)	329, 404, 604, 616, 640, 739, 1271, 1412
LguI	GCTCTTC	2 cut(s)	44, 515
LmnI	GCTCC	6 cut(s)	40, 267, 434, 727, 1232, 1303
Lsp1109I	GCAGC	8 cut(s)	761, 1147, 1156, 1165, 1174, 1183, 1226, 1235
LweI	GCATC	2 cut(s)	305, 1030
MaeI	CTAG	3 cut(s)	477, 620, 798
MaeIII	GTNAC	3 cut(s)	94, 369, 800
MalI	GATC	8 cut(s)	331, 406, 606, 618, 642, 741, 1273, 1414
MboI	GATC	8 cut(s)	329, 404, 604, 616, 640, 739, 1271, 1412
MflI	RGATCY	2 cut(s)	329, 1412
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	5 cut(s)	241, 463, 827, 935, 1134
MlyI	GAGTC	4 cut(s)	102, 284, 641, 1286
Mph1103I	ATGCAT	1 cut(s)	874
MseI	TTAA	2 cut(s)	65, 816
MspA1I	CMGCKG	3 cut(s)	752, 1217, 1226
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
NdeII	GATC	8 cut(s)	329, 404, 604, 616, 640, 739, 1271, 1412
NlaIII	CATG	5 cut(s)	239, 281, 689, 746, 1075
NlaIV	GGNNCC	1 cut(s)	1414
NmuCI	GTSAC	3 cut(s)	94, 369, 800
NsiI	ATGCAT	1 cut(s)	874
NspV	TTCGAA	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	214
PciSI	GCTCTTC	2 cut(s)	44, 515
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	1406
PkrI	GCNGC	9 cut(s)	751, 776, 1162, 1171, 1180, 1189, 1198, 1216, 1225
PleI	GAGTC	4 cut(s)	101, 284, 640, 1286
PpsI	GAGTC	4 cut(s)	101, 284, 640, 1286
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	1414
PspPI	GGNCC	1 cut(s)	877
PsrI	GAACNNNNNNTAC	2 cut(s)	520, 552
PstI	CTGCAG	6 cut(s)	118, 898, 1156, 1165, 1174, 1183
PstNI	CAGNNNCTG	5 cut(s)	122, 1160, 1169, 1178, 1187
PsuI	RGATCY	2 cut(s)	329, 1412
PvuII	CAGCTG	3 cut(s)	752, 1217, 1226
RsaI	GTAC	2 cut(s)	529, 556
RsaNI	GTAC	2 cut(s)	528, 555
SapI	GCTCTTC	2 cut(s)	44, 515
SaqAI	TTAA	2 cut(s)	65, 816
SatI	GCNGC	9 cut(s)	750, 775, 1161, 1170, 1179, 1188, 1197, 1215, 1224
Sau3AI	GATC	8 cut(s)	329, 404, 604, 616, 640, 739, 1271, 1412
Sau96I	GGNCC	1 cut(s)	877
SchI	GAGTC	4 cut(s)	102, 284, 641, 1286
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	2 cut(s)	305, 1030
SfcI	CTRYAG	8 cut(s)	114, 627, 753, 894, 1152, 1161, 1170, 1179
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	1 cut(s)	877
SmlI	CTYRAG	2 cut(s)	229, 791
SmoI	CTYRAG	2 cut(s)	229, 791
SpeI	ACTAGT	1 cut(s)	797
Sse9I	AATT	5 cut(s)	241, 463, 827, 935, 1134
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	774
SspMI	CTAG	3 cut(s)	477, 620, 798
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	1077
TaaI	ACNGT	5 cut(s)	354, 806, 814, 841, 1393
TaqI	TCGA	2 cut(s)	467, 603
TasI	AATT	5 cut(s)	241, 463, 827, 935, 1134
TatI	WGTACW	2 cut(s)	527, 554
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	1 cut(s)	1406
Tru1I	TTAA	2 cut(s)	65, 816
Tru9I	TTAA	2 cut(s)	65, 816
TscAI	CASTG	5 cut(s)	127, 321, 378, 955, 1050
TseFI	GTSAC	3 cut(s)	94, 369, 800
TseI	GCWGC	8 cut(s)	749, 1160, 1169, 1178, 1187, 1196, 1214, 1223
Tsp45I	GTSAC	3 cut(s)	94, 369, 800
TspDTI	ATGAA	9 cut(s)	96, 252, 399, 702, 870, 918, 957, 1041, 1419
TspRI	CASTG	5 cut(s)	127, 321, 378, 955, 1050
VpaK11BI	GGWCC	1 cut(s)	877
XapI	RAATTY	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	619
XspI	CTAG	3 cut(s)	477, 620, 798
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.