Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Reverse (-)

3595274 .. 3597237

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATAAAAGCCATGGCTCTATCTTCTGCCGGCGTCGTCTCTCATCTTCATCCTCCGTCGTTTTCTTCGTCGTCAGGATTATCCGTCAACAGAGTTCTGTTTCGGAATCGGAACGCTAGTCCTTGTGGTCTATCTCTTCCAATTCTCAATCCGTCTCGGTCTGTACTTGTTTTTGCTCGTGGCAAGAATCGAAAAGGATTCGTGTCTTCGTCTTCTTCGTCTCCGAAGAAAAACAAAAAGAAAAGTTTGGATGGAGCTGATAATGGAGGAGGTGAGGAGGAGGAGGATCCATTTGAGGCATTGTTTAATCTTTTAGAAGAAGATTTGAAGAATGATAACTCGGATGATGAGGAGATAAGTGAGGAAGAGTTAGAGGCATTAGCCGATGAGTTAGCTCGAGCATTGGGTGTTGGTGACGATGTTGATGACATCGACTTGTTTGGTTCAGTCACTGGTGATGTTGATGTTGATGTTGATAATGATGATGATGATAATGATGATGATGATAATGATGATGATGATGATGACAGCGAAGAAGATGAAAGACCGACTAAGCTGAAGAATTGGCAGCTTAAAAGACTGGCTTATGCATTGAAAGCTGGGCGTCGTAAAACTAGTATTAAAAATCTGGCAGCTGAGGTTTGTCTTGACAGGGCTTATGTTCTTGAATTGCTTCGTGACCCGCCTCCAAAGCTGCTAATGCTAAGTGCTACACTACCAGATGAAAAACCGCCAGTAGCAGCACCTGAGAACTCCTCACCTGATCCAAGTCCTGTGGAATCATTATCAGCTGAAGATGTTGTGGTCGAACCTAAGGAAAAAGTAAAAGATGAAGCAGTTCATGTGATGCAACAGAGATGGTCTGCTCAGAAAAGAGTGAAGAAAGCTCACATTGAAACGCTAGAGAAAGTTTACAGAAGATCAAAACGACCCACTAATGCTGTGGTTAGCAGCATTGTTCAAGTGACCAATCTTCCAAGGAAGCGAGTTTTGAAGTGGTTCGAAGATAAAAGAGCAGAAGACGGAGTTCCAGATAAGCGAGCTCCATATCAAGCTCCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

354

Amino Acids

39.11

Weight (kDa)

4.77

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	683, 731
AclWI	GGATC	3 cut(s)	281, 294, 758
AcuI	CTGAAG	2 cut(s)	578, 813
AcyI	GRCGYC	2 cut(s)	33, 604
AfaI	GTAC	1 cut(s)	165
AgsI	TTSAA	6 cut(s)	328, 595, 668, 896, 962, 994
AhlI	ACTAGT	1 cut(s)	614
Alw21I	GWGCWC	1 cut(s)	1045
Alw26I	GTCTC	3 cut(s)	43, 159, 225
AlwI	GGATC	3 cut(s)	281, 294, 758
AlwNI	CAGNNNCTG	2 cut(s)	452, 746
Ama87I	CYCGRG	1 cut(s)	396
ApeKI	GCWGC	5 cut(s)	568, 632, 694, 740, 951
Asp700I	GAANNNNTTC	3 cut(s)	672, 837, 998
AsuHPI	GGTGA	4 cut(s)	284, 425, 467, 750
AsuII	TTCGAA	1 cut(s)	1002
AvaI	CYCGRG	1 cut(s)	396
AxyI	CCTNAGG	1 cut(s)	813
BamHI	GGATCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	1045
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	3 cut(s)	198, 204, 1026
Bbv12I	GWGCWC	1 cut(s)	1045
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	5 cut(s)	580, 644, 681, 752, 963
BccI	CCATC	2 cut(s)	245, 852
BcoDI	GTCTC	3 cut(s)	43, 159, 225
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	3 cut(s)	117, 615, 902
BisI	GCNGC	5 cut(s)	569, 633, 695, 741, 952
BlsI	GCNGC	5 cut(s)	570, 634, 696, 742, 953
BmeT110I	CYCGRG	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	837
BpiI	GAAGAC	3 cut(s)	198, 204, 1026
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	1002
BsaHI	GRCGYC	2 cut(s)	33, 604
BsaJI	CCNNGG	2 cut(s)	12, 977
BsaWI	WCCGGW	1 cut(s)	1057
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	3 cut(s)	457, 585, 734
Bse21I	CCTNAGG	1 cut(s)	813
BseDI	CCNNGG	2 cut(s)	12, 977
BseGI	GGATG	3 cut(s)	49, 256, 349
BseMII	CTCAG	3 cut(s)	627, 738, 881
BseNI	ACTGG	3 cut(s)	457, 585, 734
BseRI	GAGGAG	6 cut(s)	282, 290, 293, 296, 365, 745
BseXI	GCAGC	5 cut(s)	580, 644, 681, 752, 963
BseYI	CCCAGC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	1045
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	30, 1058
BsmAI	GTCTC	3 cut(s)	43, 159, 225
BsmBI	CGTCTC	3 cut(s)	43, 159, 225
BsoBI	CYCGRG	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	1002
Bsp1286I	GDGCHC	1 cut(s)	1045
Bsp143I	GATC	3 cut(s)	286, 763, 920
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	683, 731
BspCNI	CTCAG	3 cut(s)	628, 739, 880
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	3 cut(s)	281, 294, 758
BspT104I	TTCGAA	1 cut(s)	1002
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	3 cut(s)	457, 585, 734
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	12, 977
BssMI	GATC	3 cut(s)	286, 763, 920
BssNI	GRCGYC	2 cut(s)	33, 604
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	12, 977
Bst2BI	CACGAG	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	141, 360
BstACI	GRCGYC	2 cut(s)	33, 604
BstBI	TTCGAA	1 cut(s)	1002
BstC8I	GCNNGC	2 cut(s)	31, 1041
BstDEI	CTNAG	6 cut(s)	552, 636, 704, 747, 813, 867
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	49, 256, 349
BstKTI	GATC	3 cut(s)	289, 766, 923
BstMAI	GTCTC	3 cut(s)	43, 159, 225
BstMBI	GATC	3 cut(s)	286, 763, 920
BstMWI	GCNNNNNNNGC	3 cut(s)	596, 691, 700
BstV1I	GCAGC	5 cut(s)	580, 644, 681, 752, 963
BstV2I	GAAGAC	3 cut(s)	198, 204, 1026
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
Bsu36I	CCTNAGG	1 cut(s)	813
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	49, 256, 349
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	31, 1041
CaiI	CAGNNNCTG	2 cut(s)	452, 746
Cfr10I	RCCGGY	1 cut(s)	29
CseI	GACGC	2 cut(s)	22, 593
Csp6I	GTAC	1 cut(s)	164
CspCI	CAANNNNNGTGG	2 cut(s)	756, 791
CviAII	CATG	2 cut(s)	13, 842
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	6 cut(s)	552, 636, 704, 747, 813, 867
DpnI	GATC	3 cut(s)	288, 765, 922
DpnII	GATC	3 cut(s)	286, 763, 920
Eam1104I	CTCTTC	2 cut(s)	141, 360
EarI	CTCTTC	2 cut(s)	141, 360
Ecl136II	GAGCTC	1 cut(s)	1043
Eco130I	CCWWGG	2 cut(s)	12, 977
Eco24I	GRGCYC	1 cut(s)	1045
Eco53kI	GAGCTC	1 cut(s)	1043
Eco57I	CTGAAG	2 cut(s)	578, 813
Eco81I	CCTNAGG	1 cut(s)	813
Eco88I	CYCGRG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	1043
EcoT14I	CCWWGG	2 cut(s)	12, 977
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	1045
ErhI	CCWWGG	2 cut(s)	12, 977
Esp3I	CGTCTC	3 cut(s)	43, 159, 225
FaeI	CATG	2 cut(s)	16, 845
FaiI	YATR	5 cut(s)	14, 588, 660, 843, 1048
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FatI	CATG	2 cut(s)	12, 841
FauI	CCCGC	1 cut(s)	690
Fnu4HI	GCNGC	5 cut(s)	569, 633, 695, 741, 952
FokI	GGATG	3 cut(s)	36, 263, 356
FriOI	GRGCYC	1 cut(s)	1045
Fsp4HI	GCNGC	5 cut(s)	569, 633, 695, 741, 952
FspBI	CTAG	3 cut(s)	117, 615, 902
GluI	GCNGC	5 cut(s)	569, 633, 695, 741, 952
GsaI	CCCAGC	1 cut(s)	603
HapII	CCGG	2 cut(s)	30, 1058
HgaI	GACGC	2 cut(s)	22, 593
Hin1I	GRCGYC	2 cut(s)	33, 604
Hin1II	CATG	2 cut(s)	16, 845
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	4 cut(s)	106, 187, 198, 779
HpaII	CCGG	2 cut(s)	30, 1058
HphI	GGTGA	4 cut(s)	284, 425, 467, 750
Hpy166II	GTNNAC	2 cut(s)	88, 913
Hpy188I	TCNGA	5 cut(s)	105, 111, 225, 343, 870
Hpy188III	TCNNGA	5 cut(s)	75, 647, 665, 677, 1031
Hpy8I	GTNNAC	2 cut(s)	88, 913
Hpy99I	CGWCG	4 cut(s)	38, 61, 73, 609
HpyCH4V	TGCA	2 cut(s)	590, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	596, 691, 700
HpyF3I	CTNAG	6 cut(s)	552, 636, 704, 747, 813, 867
Hsp92I	GRCGYC	2 cut(s)	33, 604
Hsp92II	CATG	2 cut(s)	16, 845
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	286, 763, 920
LmnI	GCTCC	3 cut(s)	254, 1048, 1060
Lsp1109I	GCAGC	5 cut(s)	580, 644, 681, 752, 963
LweI	GCATC	1 cut(s)	837
MaeI	CTAG	3 cut(s)	117, 615, 902
MaeIII	GTNAC	4 cut(s)	413, 448, 677, 964
MalI	GATC	3 cut(s)	288, 765, 922
MboI	GATC	3 cut(s)	286, 763, 920
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	1045
MluCI	AATT	3 cut(s)	141, 562, 668
Mph1103I	ATGCAT	1 cut(s)	592
MroNI	GCCGGC	1 cut(s)	29
MroXI	GAANNNNTTC	3 cut(s)	672, 837, 998
MseI	TTAA	3 cut(s)	306, 573, 621
MspA1I	CMGCKG	2 cut(s)	635, 791
MspI	CCGG	2 cut(s)	30, 1058
MwoI	GCNNNNNNNGC	3 cut(s)	596, 691, 700
NaeI	GCCGGC	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	3 cut(s)	286, 763, 920
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	16, 845
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	4 cut(s)	413, 448, 677, 964
NsiI	ATGCAT	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	1002
PaeR7I	CTCGAG	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 215
PdiI	GCCGGC	1 cut(s)	31
PdmI	GAANNNNTTC	3 cut(s)	672, 837, 998
PfeI	GAWTC	4 cut(s)	106, 187, 198, 779
PkrI	GCNGC	5 cut(s)	570, 634, 696, 742, 953
Psp124BI	GAGCTC	1 cut(s)	1045
PspFI	CCCAGC	1 cut(s)	599
PspN4I	GGNNCC	1 cut(s)	288
PspXI	VCTCGAGB	1 cut(s)	396
PstNI	CAGNNNCTG	2 cut(s)	452, 746
PsuI	RGATCY	1 cut(s)	286
PvuII	CAGCTG	2 cut(s)	635, 791
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	1045
SaqAI	TTAA	3 cut(s)	306, 573, 621
SatI	GCNGC	5 cut(s)	569, 633, 695, 741, 952
Sau3AI	GATC	3 cut(s)	286, 763, 920
SduI	GDGCHC	1 cut(s)	1045
SfaNI	GCATC	1 cut(s)	837
Sfr274I	CTCGAG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	1002
SlaI	CTCGAG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	3 cut(s)	141, 562, 668
SsiI	CCGC	2 cut(s)	683, 731
SspMI	CTAG	3 cut(s)	117, 615, 902
SstI	GAGCTC	1 cut(s)	1045
StyI	CCWWGG	2 cut(s)	12, 977
TaqI	TCGA	5 cut(s)	190, 397, 432, 807, 1002
TaqII	GACCGA	2 cut(s)	147, 562
TasI	AATT	3 cut(s)	141, 562, 668
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	4 cut(s)	106, 187, 198, 779
Tru1I	TTAA	3 cut(s)	306, 573, 621
Tru9I	TTAA	3 cut(s)	306, 573, 621
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	4 cut(s)	413, 448, 677, 964
TseI	GCWGC	5 cut(s)	568, 632, 694, 740, 951
Tsp45I	GTSAC	4 cut(s)	413, 448, 677, 964
TspDTI	ATGAA	5 cut(s)	38, 555, 738, 830, 846
TspGWI	ACGGA	4 cut(s)	45, 73, 141, 1038
TspRI	CASTG	1 cut(s)	457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XhoI	CTCGAG	1 cut(s)	396
XmnI	GAANNNNTTC	3 cut(s)	672, 837, 998
XspI	CTAG	3 cut(s)	117, 615, 902
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.