Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Reverse (-)

22836255 .. 22837756

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCTTCGCTTCGGCTCTCAACACTCCCAACGGCCTTCGCCGTCTACCGTCTTCCCGCCACGAAATAACCCGAACCGGACCAGCCGCTCTGGTCCTGCCACGTCACCTCCCGGCTCGCTTCCCGTCCACACTCGCCCTCGCTCGCCGTAAAAACCACCGCGGCTCCGCGTTGACGTCATCTCCGCCGAAGATAAAGAAGAAAAGCGCGGCGAGGAATGCGGAGGAGGAGGATGAAGTGGACGGAGATGCTATAGACGCTTTGTTTTCGCTGCTGGAGGAGGACCTCAGAAACGACGGCGTGTCGTTGGATGACGACGGCGAAGACGACGAGATAAGTGAGGAGGATCTTGCTAGGCTTGAAGAGGAGCTGGCGGAGGCTTTTGGTGCGATTGATGAGGATGAAGACGAAGACGACGACGGCGATGATGACGTTATTCAGAGCAATGCGACTGAAGAAGAGGAGGAGGAGGATGAGGACGATGAAGTTGAAGTTGCAGTGAAGCTTAAGACTTGGCAATTCCGGAGATTGGCTTCGGCTTTAAAAGTCGGTCGCCGCAAAACTAGTATAAAAAACCTTGCAGCTGAGCTTTGTCTTGACAGGGCCCTTGTTCTTCAAATGCTTCGTGATCCGCCTCCAAATCTTTTGATGCTTAGTGCTGCTCTGCCTGATGCACCTGCTCCTAAAAAATCTGTGCCTGTGCCTGAACCAGAGCCTGAAGAAACTATTGTGGAAGCCACTGTAGACACTGTTGTTGAAACGGATTCAGATGCTGCAGTGGTCGAAGCTGCGGTGAAGGTGCCGGTTCATGTTAGGCAACAAAAGTTTTCTGCTCAGAAGAGACTGAAGAAAGTGCATCTAGATACCCTTGAAAGAGTTTATAGAAGAACAAAGCGGCCAACGAATGCAATTGTGAGCAGCATTGTTCATGTGACAAATCTGCCGCGCAAAAGAATTGTGAAATGGTTTGAAGACAAACGTTCTGAAGAGGGGGTTCCTGACTCTCGGCGTCCATATCAACCGTCTGCTCCTACTACTGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

349

Amino Acids

38.69

Weight (kDa)

4.82

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	685
AatII	GACGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	799
AccBSI	CCGCTC	1 cut(s)	89
AccI	GTMKAC	2 cut(s)	46, 744
AccII	CGCG	4 cut(s)	162, 170, 209, 946
AccIII	TCCGGA	1 cut(s)	522
AclI	AACGTT	1 cut(s)	979
AclWI	GGATC	2 cut(s)	354, 623
AcoI	YGGCCR	1 cut(s)	896
AcuI	CTGAAG	4 cut(s)	474, 738, 866, 1005
AcyI	GRCGYC	2 cut(s)	176, 1009
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	6 cut(s)	362, 491, 617, 758, 872, 971
AhdI	GACNNNNNGTC	1 cut(s)	301
AhlI	ACTAGT	1 cut(s)	563
AjiI	CACGTC	1 cut(s)	104
AluBI	AGCT	5 cut(s)	370, 505, 584, 589, 788
AluI	AGCT	5 cut(s)	370, 505, 584, 589, 788
Alw26I	GTCTC	1 cut(s)	835
AlwI	GGATC	2 cut(s)	354, 623
AlwNI	CAGNNNCTG	2 cut(s)	716, 773
Aor13HI	TCCGGA	1 cut(s)	522
AoxI	GGCC	4 cut(s)	3, 34, 603, 896
ApaI	GGGCCC	1 cut(s)	607
ApeKI	GCWGC	6 cut(s)	271, 581, 659, 773, 788, 918
AspLEI	GCGC	2 cut(s)	209, 948
AspS9I	GGNCC	5 cut(s)	80, 94, 283, 603, 604
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	98, 805
AvaII	GGWCC	3 cut(s)	80, 94, 283
BaeGI	GKGCMC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	607
BbsI	GAAGAC	5 cut(s)	45, 330, 411, 417, 978
BbvI	GCAGC	6 cut(s)	258, 593, 646, 760, 775, 930
BceAI	ACGGC	6 cut(s)	27, 49, 132, 313, 334, 436
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	835
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	4 cut(s)	354, 564, 860, 1045
BfmI	CTRYAG	3 cut(s)	252, 741, 774
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	685
BlpI	GCTNAGC	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	3 cut(s)	80, 94, 283
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	5 cut(s)	80, 94, 283, 603, 604
BmiI	GGNNCC	4 cut(s)	166, 605, 801, 996
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	5 cut(s)	238, 639, 661, 760, 865
BpiI	GAAGAC	5 cut(s)	45, 330, 411, 417, 978
BpmI	CTGGAG	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	176, 1009
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	77, 522
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 123, 149, 166, 179, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse118I	RCCGGY	1 cut(s)	802
Bse3DI	GCAATG	1 cut(s)	451
BseAI	TCCGGA	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	4 cut(s)	238, 316, 406, 478
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	1 cut(s)	451
BseMII	CTCAG	3 cut(s)	301, 576, 848
BseRI	GAGGAG	8 cut(s)	239, 242, 293, 356, 380, 476, 479, 482
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	6 cut(s)	258, 593, 646, 760, 775, 930
Bsh1236I	CGCG	4 cut(s)	162, 170, 209, 946
Bsh1285I	CGRYCG	1 cut(s)	553
BshFI	GGCC	4 cut(s)	5, 36, 605, 898
BshNI	GGYRCC	1 cut(s)	799
BsiEI	CGRYCG	1 cut(s)	553
BsiSI	CCGG	4 cut(s)	78, 113, 523, 803
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	835
BsmI	GAATGC	2 cut(s)	223, 910
BsnI	GGCC	4 cut(s)	5, 36, 605, 898
Bsp120I	GGGCCC	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp13I	TCCGGA	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	346, 628
Bsp1720I	GCTNAGC	1 cut(s)	585
BspANI	GGCC	4 cut(s)	5, 36, 605, 898
BspCNI	CTCAG	3 cut(s)	300, 577, 847
BspEI	TCCGGA	1 cut(s)	522
BspFNI	CGCG	4 cut(s)	162, 170, 209, 946
BspLI	GGNNCC	4 cut(s)	166, 605, 801, 996
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	2 cut(s)	354, 623
BspT107I	GGYRCC	1 cut(s)	799
BspTI	CTTAAG	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	802
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	346, 628
BssNI	GRCGYC	2 cut(s)	176, 1009
Bst4CI	ACNGT	5 cut(s)	51, 742, 751, 1023, 1039
Bst6I	CTCTTC	4 cut(s)	357, 453, 833, 981
BstACI	GRCGYC	2 cut(s)	176, 1009
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	118, 145, 372
BstDEI	CTNAG	4 cut(s)	287, 585, 653, 834
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	4 cut(s)	238, 316, 406, 478
BstFNI	CGCG	4 cut(s)	162, 170, 209, 946
BstHHI	GCGC	2 cut(s)	209, 948
BstKTI	GATC	2 cut(s)	349, 631
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	2 cut(s)	346, 628
BstMCI	CGRYCG	1 cut(s)	553
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 257, 386
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	3 cut(s)	252, 741, 774
BstSLI	GKGCMC	1 cut(s)	607
BstUI	CGCG	4 cut(s)	162, 170, 209, 946
BstV1I	GCAGC	6 cut(s)	258, 593, 646, 760, 775, 930
BstV2I	GAAGAC	5 cut(s)	45, 330, 411, 417, 978
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	5, 36, 605, 898
BtgI	CCRYGG	1 cut(s)	160
BtgZI	GCGATG	1 cut(s)	438
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	238, 316, 406, 478
BtsI	GCAGTG	2 cut(s)	504, 783
BtsIMutI	CAGTG	4 cut(s)	504, 738, 747, 783
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	3 cut(s)	118, 145, 372
CaiI	CAGNNNCTG	2 cut(s)	716, 773
CfoI	GCGC	2 cut(s)	209, 948
Cfr10I	RCCGGY	1 cut(s)	802
Cfr13I	GGNCC	5 cut(s)	80, 94, 283, 603, 604
Cfr42I	CCGCGG	1 cut(s)	163
CseI	GACGC	2 cut(s)	266, 998
CviAII	CATG	2 cut(s)	809, 929
DdeI	CTNAG	4 cut(s)	287, 585, 653, 834
DpnI	GATC	2 cut(s)	348, 630
DpnII	GATC	2 cut(s)	346, 628
DraI	TTTAAA	1 cut(s)	543
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	896
Eam1104I	CTCTTC	4 cut(s)	357, 453, 833, 981
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	4 cut(s)	357, 453, 833, 981
EciI	GGCGGA	3 cut(s)	174, 389, 621
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	3 cut(s)	80, 94, 283
Eco57I	CTGAAG	4 cut(s)	474, 738, 866, 1005
EcoO109I	RGGNCCY	3 cut(s)	283, 603, 604
EcoT38I	GRGCYC	1 cut(s)	607
FaeI	CATG	2 cut(s)	812, 932
FaiI	YATR	6 cut(s)	254, 569, 810, 882, 930, 1015
FatI	CATG	2 cut(s)	808, 928
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	2 cut(s)	46, 744
FokI	GGATG	4 cut(s)	245, 323, 413, 485
FriOI	GRGCYC	1 cut(s)	607
FspBI	CTAG	4 cut(s)	354, 564, 860, 1045
GlaI	GCGC	2 cut(s)	208, 947
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	4 cut(s)	5, 36, 605, 898
HapII	CCGG	4 cut(s)	78, 113, 523, 803
HgaI	GACGC	2 cut(s)	266, 998
HhaI	GCGC	2 cut(s)	209, 948
Hin1I	GRCGYC	2 cut(s)	176, 1009
Hin1II	CATG	2 cut(s)	812, 932
Hin6I	GCGC	2 cut(s)	207, 946
HinP1I	GCGC	2 cut(s)	207, 946
HincII	GTYRAC	2 cut(s)	174, 1042
HindII	GTYRAC	2 cut(s)	174, 1042
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	764, 1001
HpaII	CCGG	4 cut(s)	78, 113, 523, 803
HphI	GGTGA	2 cut(s)	98, 805
Hpy166II	GTNNAC	6 cut(s)	47, 129, 174, 241, 745, 1042
Hpy188I	TCNGA	5 cut(s)	290, 441, 769, 837, 985
Hpy188III	TCNNGA	5 cut(s)	523, 596, 626, 860, 998
Hpy8I	GTNNAC	6 cut(s)	47, 129, 174, 241, 745, 1042
Hpy99I	CGWCG	5 cut(s)	299, 320, 332, 419, 422
HpyAV	CCTTC	3 cut(s)	16, 47, 790
HpyCH4III	ACNGT	5 cut(s)	51, 742, 751, 1023, 1039
HpyCH4IV	ACGT	4 cut(s)	103, 176, 432, 979
HpyCH4V	TGCA	6 cut(s)	497, 581, 674, 776, 856, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 257, 386
HpyF3I	CTNAG	4 cut(s)	287, 585, 653, 834
HpySE526I	ACGT	4 cut(s)	103, 176, 432, 979
Hsp92I	GRCGYC	2 cut(s)	176, 1009
Hsp92II	CATG	2 cut(s)	812, 932
HspAI	GCGC	2 cut(s)	207, 946
Kpn2I	TCCGGA	1 cut(s)	522
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	346, 628
LmnI	GCTCC	4 cut(s)	170, 367, 685, 1033
Lsp1109I	GCAGC	6 cut(s)	258, 593, 646, 760, 775, 930
LweI	GCATC	5 cut(s)	238, 639, 661, 760, 865
MaeI	CTAG	4 cut(s)	354, 564, 860, 1045
MaeII	ACGT	4 cut(s)	103, 176, 432, 979
MaeIII	GTNAC	2 cut(s)	104, 931
MalI	GATC	2 cut(s)	348, 630
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	2 cut(s)	346, 628
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	3 cut(s)	518, 909, 954
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	1 cut(s)	288
MroI	TCCGGA	1 cut(s)	522
MseI	TTAA	2 cut(s)	507, 542
MspA1I	CMGCKG	2 cut(s)	162, 584
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	4 cut(s)	78, 113, 523, 803
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	2 cut(s)	223, 910
MvnI	CGCG	4 cut(s)	162, 170, 209, 946
MwoI	GCNNNNNNNGC	3 cut(s)	218, 257, 386
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	346, 628
NlaIII	CATG	2 cut(s)	812, 932
NlaIV	GGNNCC	4 cut(s)	166, 605, 801, 996
NmeAIII	GCCGAG	1 cut(s)	985
NmuCI	GTSAC	2 cut(s)	104, 931
PaqCI	CACCTGC	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 414, 420
PctI	GAATGC	2 cut(s)	223, 910
PfeI	GAWTC	1 cut(s)	764
PleI	GAGTC	1 cut(s)	995
PpsI	GAGTC	1 cut(s)	995
PpuMI	RGGWCCY	1 cut(s)	283
Psp1406I	AACGTT	1 cut(s)	979
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	4 cut(s)	166, 605, 801, 996
PspOMI	GGGCCC	1 cut(s)	603
PspPI	GGNCC	5 cut(s)	80, 94, 283, 603, 604
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	2 cut(s)	716, 773
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	584
SacII	CCGCGG	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	507, 542
Sau3AI	GATC	2 cut(s)	346, 628
Sau96I	GGNCC	5 cut(s)	80, 94, 283, 603, 604
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	5 cut(s)	238, 639, 661, 760, 865
SfcI	CTRYAG	3 cut(s)	252, 741, 774
Sfr303I	CCGCGG	1 cut(s)	163
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	3 cut(s)	80, 94, 283
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	3 cut(s)	518, 909, 954
SspMI	CTAG	4 cut(s)	354, 564, 860, 1045
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	5 cut(s)	51, 742, 751, 1023, 1039
TaiI	ACGT	4 cut(s)	106, 179, 435, 982
TaqI	TCGA	1 cut(s)	783
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	3 cut(s)	518, 909, 954
TauI	GCSGC	6 cut(s)	89, 165, 212, 558, 898, 946
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	2 cut(s)	507, 542
Tru9I	TTAA	2 cut(s)	507, 542
TscAI	CASTG	4 cut(s)	504, 745, 754, 783
TseFI	GTSAC	2 cut(s)	104, 931
TseI	GCWGC	6 cut(s)	271, 581, 659, 773, 788, 918
Tsp45I	GTSAC	2 cut(s)	104, 931
TspDTI	ATGAA	5 cut(s)	249, 417, 498, 797, 917
TspGWI	ACGGA	2 cut(s)	258, 776
TspRI	CASTG	4 cut(s)	504, 745, 754, 783
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	80, 94, 283
XbaI	TCTAGA	1 cut(s)	859
XmiI	GTMKAC	2 cut(s)	46, 744
XspI	CTAG	4 cut(s)	354, 564, 860, 1045
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.