Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Reverse (-)

62601706 .. 62603285

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG398600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTTTCGCTTCGGCGCTCAACGCTCCTAACGGCCTTCATCGTCTACCGTCTTCCCGCCACGAAATAACCCGAACCGGACCCGCCAGTCTGGTCCTGCCACGTCACCTTCCGGCCCGCTTCTCATCCACGCTCGCCTTCGCCCGCCGTAAGAACCACCGCGCCGCGGTGACGTCAGCTCAGCCGAAGTTAAAGAAGAAAAGCGCGGCGAAGAATGAGGAGGATGAAGTGGACGGCGATGCTATAGACGCTTTGTTTTCGCTGCTGGAGGAAGACCTCAGAAACGACGGCGTGTCGTTTGATGATGACGGCGAAGACGACGAGATAAGCGAAGAGGACCTGGCTAGGCTTGAAGAGGAACTGGCGGAGGCGTTTGGTGCGGTTGATGAGGATGAAGATGAAGAGGAGGATGACGAAGACGGGGACGGCGATGTTGATGTTGTTCAGAGCGATGCGACTGAAGAAGAAGAAGAAGAAGATGAGGAGGAGGAGGACGACGACGATGAAGTTGAAGTTGCTGTGAAGCTTAAGACTTGGCAATTTCGGAGATTGGCTTCAGCTTTAAAAGTCGGTCGCCGCAAAACCAGTATAAAAGCCCTTGCAGCTGAGCTTTGTCTTGACAGGGCTCTTGTTCTTCAAATGCTTCGTGATCCGCCTCCAAATCTTTTGATGCTCAGTGCTGCTCTACCTGATGTACCTGCTCCTAAAAAATCTGTGCCTGAACCAAAGCCTGTAGAAACTGTTGTGGAAACCACTGTGGAAACTGTTGTGGAACCTACTACAGATGCTGCAGCGGTCGAAACTGCGGTGAAGTTGCCGGTTCATGTCCGGCAACAAAAGTTTTCTGGTCAGAAGAGACTGAAGAAAGTGCATCTTGACACCCTTGAAAGAGTTTATAGAAGAACAAAGCGCCCAACAAATGCAATTGTCAGCAGCATAGTGCATGTGACAAACCTGCCGCGCAAAAGAATTGTGAAATGGTTTGAAGACAAACGTTCTGAAGAAGGGGTTCCTGACTCTCGGCACCCATATCAACCGTCTGCTCCTACTACTGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

353

Amino Acids

39.32

Weight (kDa)

4.74

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
AatII	GACGTC	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	706, 963
AccB1I	GGYRCC	1 cut(s)	1023
AccI	GTMKAC	1 cut(s)	46
AccII	CGCG	4 cut(s)	162, 167, 206, 961
AclI	AACGTT	1 cut(s)	994
AclWI	GGATC	1 cut(s)	644
AcuI	CTGAAG	4 cut(s)	480, 540, 881, 1020
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	696
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	5 cut(s)	353, 512, 638, 887, 986
AhdI	GACNNNNNGTC	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	5 cut(s)	179, 526, 560, 605, 610
AluI	AGCT	5 cut(s)	179, 526, 560, 605, 610
Alw26I	GTCTC	1 cut(s)	850
AlwI	GGATC	1 cut(s)	644
AlwNI	CAGNNNCTG	1 cut(s)	788
AoxI	GGCC	2 cut(s)	34, 114
ApeKI	GCWGC	6 cut(s)	262, 602, 680, 788, 791, 933
Asp700I	GAANNNNTTC	1 cut(s)	1008
AspLEI	GCGC	5 cut(s)	19, 164, 206, 912, 963
AspS9I	GGNCC	4 cut(s)	80, 94, 115, 337
AsuHPI	GGTGA	3 cut(s)	98, 181, 820
AvaII	GGWCC	3 cut(s)	80, 94, 337
BanI	GGYRCC	1 cut(s)	1023
BanII	GRGCYC	1 cut(s)	628
BbsI	GAAGAC	5 cut(s)	45, 279, 321, 423, 993
BbvI	GCAGC	6 cut(s)	249, 614, 667, 775, 803, 945
BceAI	ACGGC	6 cut(s)	49, 132, 250, 304, 325, 442
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	850
BfaI	CTAG	2 cut(s)	345, 1060
BfmI	CTRYAG	4 cut(s)	243, 732, 780, 789
BfoI	RGCGCY	2 cut(s)	20, 913
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	2 cut(s)	706, 963
BlpI	GCTNAGC	2 cut(s)	180, 606
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	3 cut(s)	80, 94, 337
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	80, 94, 115, 337
BmiI	GGNNCC	4 cut(s)	82, 774, 1011, 1025
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	5 cut(s)	229, 442, 660, 775, 880
BpiI	GAAGAC	5 cut(s)	45, 279, 321, 423, 993
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	2 cut(s)	180, 606
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	3 cut(s)	87, 366, 585
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	4 cut(s)	125, 229, 397, 415
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	194, 292, 597, 688
BseNI	ACTGG	3 cut(s)	87, 366, 585
BseRI	GAGGAG	5 cut(s)	233, 419, 497, 500, 503
BseXI	GCAGC	6 cut(s)	249, 614, 667, 775, 803, 945
Bsh1236I	CGCG	4 cut(s)	162, 167, 206, 961
Bsh1285I	CGRYCG	2 cut(s)	574, 798
BshFI	GGCC	2 cut(s)	36, 116
BshNI	GGYRCC	1 cut(s)	1023
BsiEI	CGRYCG	2 cut(s)	574, 798
BsiSI	CCGG	4 cut(s)	78, 113, 818, 829
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	850
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	36, 116
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	1 cut(s)	649
Bsp1720I	GCTNAGC	2 cut(s)	180, 606
BspANI	GGCC	2 cut(s)	36, 116
BspCNI	CTCAG	4 cut(s)	193, 291, 598, 687
BspFNI	CGCG	4 cut(s)	162, 167, 206, 961
BspLI	GGNNCC	4 cut(s)	82, 774, 1011, 1025
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	2 cut(s)	706, 963
BspPI	GGATC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	1023
BspTI	CTTAAG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	817
BsrI	ACTGG	3 cut(s)	87, 366, 585
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	649
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	6 cut(s)	51, 742, 757, 766, 1038, 1054
Bst6I	CTCTTC	4 cut(s)	327, 348, 396, 848
BstACI	GRCGYC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	118, 135, 145
BstDEI	CTNAG	4 cut(s)	180, 278, 606, 674
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	4 cut(s)	125, 229, 397, 415
BstFNI	CGCG	4 cut(s)	162, 167, 206, 961
BstH2I	RGCGCY	2 cut(s)	20, 913
BstHHI	GCGC	5 cut(s)	19, 164, 206, 912, 963
BstKTI	GATC	1 cut(s)	652
BstMAI	GTCTC	1 cut(s)	850
BstMBI	GATC	1 cut(s)	649
BstMCI	CGRYCG	2 cut(s)	574, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 602
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	947
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	4 cut(s)	243, 732, 780, 789
BstUI	CGCG	4 cut(s)	162, 167, 206, 961
BstV1I	GCAGC	6 cut(s)	249, 614, 667, 775, 803, 945
BstV2I	GAAGAC	5 cut(s)	45, 279, 321, 423, 993
BsuRI	GGCC	2 cut(s)	36, 116
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	3 cut(s)	252, 444, 465
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	125, 229, 397, 415
BtsIMutI	CAGTG	2 cut(s)	682, 753
BveI	ACCTGC	2 cut(s)	706, 963
Cac8I	GCNNGC	3 cut(s)	118, 135, 145
CaiI	CAGNNNCTG	1 cut(s)	788
CfoI	GCGC	5 cut(s)	19, 164, 206, 912, 963
Cfr10I	RCCGGY	1 cut(s)	817
Cfr13I	GGNCC	4 cut(s)	80, 94, 115, 337
Cfr42I	CCGCGG	1 cut(s)	168
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	695
CviAII	CATG	2 cut(s)	824, 944
CviQI	GTAC	1 cut(s)	695
DdeI	CTNAG	4 cut(s)	180, 278, 606, 674
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DraI	TTTAAA	1 cut(s)	564
DrdI	GACNNNNNNGTC	1 cut(s)	87
DriI	GACNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	327, 348, 396, 848
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	4 cut(s)	327, 348, 396, 848
EciI	GGCGGA	2 cut(s)	380, 642
Eco24I	GRGCYC	1 cut(s)	628
Eco47I	GGWCC	3 cut(s)	80, 94, 337
Eco57I	CTGAAG	4 cut(s)	480, 540, 881, 1020
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	628
FaeI	CATG	2 cut(s)	827, 947
FaiI	YATR	7 cut(s)	245, 590, 825, 897, 938, 945, 1030
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	2 cut(s)	823, 943
FauI	CCCGC	4 cut(s)	65, 91, 125, 152
FblI	GTMKAC	1 cut(s)	46
FokI	GGATG	4 cut(s)	112, 236, 404, 422
FriOI	GRGCYC	1 cut(s)	628
FspBI	CTAG	2 cut(s)	345, 1060
GlaI	GCGC	5 cut(s)	18, 163, 205, 911, 962
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	20, 913
HaeIII	GGCC	2 cut(s)	36, 116
HapII	CCGG	4 cut(s)	78, 113, 818, 829
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	5 cut(s)	19, 164, 206, 912, 963
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	827, 947
Hin6I	GCGC	5 cut(s)	17, 162, 204, 910, 961
HinP1I	GCGC	5 cut(s)	17, 162, 204, 910, 961
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	1 cut(s)	1016
HpaII	CCGG	4 cut(s)	78, 113, 818, 829
HphI	GGTGA	3 cut(s)	98, 181, 820
Hpy166II	GTNNAC	3 cut(s)	47, 232, 1057
Hpy188I	TCNGA	5 cut(s)	281, 447, 546, 852, 1000
Hpy188III	TCNNGA	4 cut(s)	617, 647, 875, 1013
Hpy8I	GTNNAC	3 cut(s)	47, 232, 1057
Hpy99I	CGWCG	4 cut(s)	290, 323, 500, 503
HpyAV	CCTTC	4 cut(s)	47, 119, 148, 998
HpyCH4III	ACNGT	6 cut(s)	51, 742, 757, 766, 1038, 1054
HpyCH4IV	ACGT	3 cut(s)	103, 173, 994
HpyCH4V	TGCA	5 cut(s)	602, 791, 871, 923, 943
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 602
HpyF3I	CTNAG	4 cut(s)	180, 278, 606, 674
HpySE526I	ACGT	3 cut(s)	103, 173, 994
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	827, 947
HspAI	GCGC	5 cut(s)	17, 162, 204, 910, 961
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	3 cut(s)	31, 706, 1048
Lsp1109I	GCAGC	6 cut(s)	249, 614, 667, 775, 803, 945
LweI	GCATC	5 cut(s)	229, 442, 660, 775, 880
MaeI	CTAG	2 cut(s)	345, 1060
MaeII	ACGT	3 cut(s)	103, 173, 994
MaeIII	GTNAC	3 cut(s)	104, 169, 946
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MfeI	CAATTG	1 cut(s)	924
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	3 cut(s)	539, 924, 969
MlyI	GAGTC	1 cut(s)	1010
MroXI	GAANNNNTTC	1 cut(s)	1008
MseI	TTAA	3 cut(s)	191, 528, 563
MspA1I	CMGCKG	3 cut(s)	167, 605, 794
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	4 cut(s)	78, 113, 818, 829
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	924
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	4 cut(s)	162, 167, 206, 961
MwoI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 602
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	2 cut(s)	827, 947
NlaIV	GGNNCC	4 cut(s)	82, 774, 1011, 1025
NmeAIII	GCCGAG	1 cut(s)	1000
NmuCI	GTSAC	3 cut(s)	104, 169, 946
NspI	RCATGY	1 cut(s)	947
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 327, 426
PdmI	GAANNNNTTC	1 cut(s)	1008
PleI	GAGTC	1 cut(s)	1010
PpsI	GAGTC	1 cut(s)	1010
PpuMI	RGGWCCY	1 cut(s)	337
Psp1406I	AACGTT	1 cut(s)	994
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	4 cut(s)	82, 774, 1011, 1025
PspPI	GGNCC	4 cut(s)	80, 94, 115, 337
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	793
PstNI	CAGNNNCTG	1 cut(s)	788
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	696
RsaNI	GTAC	1 cut(s)	695
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	191, 528, 563
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	4 cut(s)	80, 94, 115, 337
SchI	GAGTC	1 cut(s)	1010
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	5 cut(s)	229, 442, 660, 775, 880
SfcI	CTRYAG	4 cut(s)	243, 732, 780, 789
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	80, 94, 337
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	3 cut(s)	539, 924, 969
SspMI	CTAG	2 cut(s)	345, 1060
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	6 cut(s)	51, 742, 757, 766, 1038, 1054
TaiI	ACGT	3 cut(s)	106, 176, 997
TaqI	TCGA	1 cut(s)	798
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	3 cut(s)	539, 924, 969
TauI	GCSGC	4 cut(s)	167, 209, 579, 961
Tru1I	TTAA	3 cut(s)	191, 528, 563
Tru9I	TTAA	3 cut(s)	191, 528, 563
TscAI	CASTG	2 cut(s)	682, 760
TseFI	GTSAC	3 cut(s)	104, 169, 946
TseI	GCWGC	6 cut(s)	262, 602, 680, 788, 791, 933
Tsp45I	GTSAC	3 cut(s)	104, 169, 946
TspDTI	ATGAA	6 cut(s)	29, 240, 408, 414, 519, 812
TspRI	CASTG	2 cut(s)	682, 760
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	3 cut(s)	80, 94, 337
XceI	RCATGY	1 cut(s)	947
XmiI	GTMKAC	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	1008
XspI	CTAG	2 cut(s)	345, 1060
ZraI	GACGTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.