Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Forward (+)

10249927 .. 10251492

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTTTCACTTCGGCGCTCAACGCTCCTAACGGCCTTCATCATCTACCGTCTTCCCGCCACGAAATAACCCGAACCGGAACGGCCAGTCTGGTCCTGCGACGTCACCTTCCGGCTCGCTTCTCGTCCACTCTCGCCTTAGCCCGCCGTAAGAACCACCGCGCCGCGGTGACGTCAGCTCAACCGAAGATAAAGAAGAAAAGCGCGGCGAAGAATGAGGAGGAGGATGAAGTGGACGGCGATGCTATAGACGCTTTGTTTTCGCTGCTGGAGGAAGACCTCAGAAACGACGGCGTGTCGTTTGATGATGACGGCGAAGACGACGAGATAAGTGAAGAGGACCTGGCTAGGCTTGAAGAGGAACTGGCGGAGGCTTTTGGTGCGGTTGATGAGGATGAAGATGAAGACGAGGAAGAAGAGGAGGATGACGAAGACGGCGATGTTGATGTTGTTCAGAGCGATGCGACTGAAGAAGAAGAAGTTGAAGTAGCTGTGAAGCTTAAGACTTGGCAATTTCGGAGATTGGCTTCAGCTTTAAAAGTCGGTCGCCGCAAAACCAGTATAAAAGCCCTTGCAGCTGAGCTTTGTCTTGACAGGGCTCTTGTTCTTCAAATGCTTCGTGATCCGCCTCCAAATCTTTTGATGCTCAGTGCTGCTCTACCTGATGTACCTGCTCCTAAAAAATCTGTGCCTGAACCAAAGCCTGTAGAAACTGTTGTGCAAACCACTGTGGAAACTGTTGTGGAACCTACTACAGATGCTGCAGCAGTTGAAACTGCGGTGAAGGTGCCGGTTCATGTCCGGCAACAAAAGTTTTCTGGTCAGAAGAGATTGAAGAAAGTGCATCTTGACACCCTTGAAAGAGTTTATAGAAGAACAAAGCGCCCAACAAATGCAATTGTCAGCAGCATGGTGCATGTGACAAACCTGCCGCGCAAAAGAATTGTGAAATGGTTTGAAGACAAACGTTCTGAAGAGGGGGTTCCTGACTCTCGGCGTCCATATCAACCGTCTGCTCCTACTACTGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

345

Amino Acids

38.36

Weight (kDa)

5.03

Isoelectric Point (pI)

61.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	106, 176
Acc36I	ACCTGC	2 cut(s)	679, 936
AccB1I	GGYRCC	1 cut(s)	787
AccII	CGCG	4 cut(s)	162, 167, 206, 934
AclI	AACGTT	1 cut(s)	967
AclWI	GGATC	1 cut(s)	617
AcoI	YGGCCR	1 cut(s)	84
AcuI	CTGAAG	3 cut(s)	489, 513, 993
AcyI	GRCGYC	3 cut(s)	103, 173, 997
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	7 cut(s)	356, 485, 611, 773, 835, 860, 959
AhdI	GACNNNNNGTC	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	6 cut(s)	179, 491, 499, 533, 578, 583
AluI	AGCT	6 cut(s)	179, 491, 499, 533, 578, 583
AlwI	GGATC	1 cut(s)	617
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	2 cut(s)	34, 84
ApeKI	GCWGC	6 cut(s)	265, 575, 653, 761, 764, 906
AspLEI	GCGC	5 cut(s)	19, 164, 206, 885, 936
AspS9I	GGNCC	2 cut(s)	94, 340
AsuHPI	GGTGA	3 cut(s)	98, 181, 793
AvaII	GGWCC	2 cut(s)	94, 340
BanI	GGYRCC	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	601
BbsI	GAAGAC	6 cut(s)	45, 282, 324, 411, 438, 966
BbvI	GCAGC	6 cut(s)	252, 587, 640, 748, 776, 918
BceAI	ACGGC	7 cut(s)	49, 99, 132, 253, 307, 328, 451
BciT130I	CCWGG	1 cut(s)	344
BfaI	CTAG	2 cut(s)	348, 1033
BfmI	CTRYAG	4 cut(s)	246, 705, 753, 762
BfoI	RGCGCY	2 cut(s)	20, 886
BfrI	CTTAAG	1 cut(s)	500
BfuAI	ACCTGC	2 cut(s)	679, 936
BlpI	GCTNAGC	1 cut(s)	579
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	2 cut(s)	94, 340
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	94, 340
BmiI	GGNNCC	3 cut(s)	747, 789, 984
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	5 cut(s)	232, 451, 633, 748, 853
BpiI	GAAGAC	6 cut(s)	45, 282, 324, 411, 438, 966
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	139
Bpu1102I	GCTNAGC	1 cut(s)	579
BsaHI	GRCGYC	3 cut(s)	103, 173, 997
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	790
Bse1I	ACTGG	3 cut(s)	87, 369, 558
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	232, 400, 430
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	3 cut(s)	295, 570, 661
BseNI	ACTGG	3 cut(s)	87, 369, 558
BseRI	GAGGAG	3 cut(s)	233, 236, 434
BseXI	GCAGC	6 cut(s)	252, 587, 640, 748, 776, 918
Bsh1236I	CGCG	4 cut(s)	162, 167, 206, 934
Bsh1285I	CGRYCG	1 cut(s)	547
BshFI	GGCC	2 cut(s)	36, 86
BshNI	GGYRCC	1 cut(s)	787
BsiEI	CGRYCG	1 cut(s)	547
BsiSI	CCGG	4 cut(s)	78, 113, 791, 802
BslI	CCNNNNNNNGG	1 cut(s)	166
BsnI	GGCC	2 cut(s)	36, 86
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	1 cut(s)	622
Bsp1720I	GCTNAGC	1 cut(s)	579
BspANI	GGCC	2 cut(s)	36, 86
BspCNI	CTCAG	3 cut(s)	294, 571, 660
BspFNI	CGCG	4 cut(s)	162, 167, 206, 934
BspLI	GGNNCC	3 cut(s)	747, 789, 984
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	2 cut(s)	679, 936
BspPI	GGATC	1 cut(s)	617
BspT107I	GGYRCC	1 cut(s)	787
BspTI	CTTAAG	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	790
BsrI	ACTGG	3 cut(s)	87, 369, 558
BssAI	RCCGGY	1 cut(s)	790
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	622
BssNI	GRCGYC	3 cut(s)	103, 173, 997
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	6 cut(s)	51, 715, 730, 739, 1011, 1027
Bst6I	CTCTTC	5 cut(s)	330, 351, 411, 821, 969
BstACI	GRCGYC	3 cut(s)	103, 173, 997
BstAFI	CTTAAG	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	118, 145
BstDEI	CTNAG	4 cut(s)	139, 281, 579, 647
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	232, 400, 430
BstFNI	CGCG	4 cut(s)	162, 167, 206, 934
BstH2I	RGCGCY	2 cut(s)	20, 886
BstHHI	GCGC	5 cut(s)	19, 164, 206, 885, 936
BstKTI	GATC	1 cut(s)	625
BstMBI	GATC	1 cut(s)	622
BstMCI	CGRYCG	1 cut(s)	547
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 251, 380, 575
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	920
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	4 cut(s)	246, 705, 753, 762
BstUI	CGCG	4 cut(s)	162, 167, 206, 934
BstV1I	GCAGC	6 cut(s)	252, 587, 640, 748, 776, 918
BstV2I	GAAGAC	6 cut(s)	45, 282, 324, 411, 438, 966
BsuRI	GGCC	2 cut(s)	36, 86
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	3 cut(s)	255, 453, 474
BtsCI	GGATG	3 cut(s)	232, 400, 430
BtsIMutI	CAGTG	2 cut(s)	655, 726
BveI	ACCTGC	2 cut(s)	679, 936
Cac8I	GCNNGC	2 cut(s)	118, 145
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	5 cut(s)	19, 164, 206, 885, 936
Cfr10I	RCCGGY	1 cut(s)	790
Cfr13I	GGNCC	2 cut(s)	94, 340
Cfr42I	CCGCGG	1 cut(s)	168
CseI	GACGC	2 cut(s)	260, 986
Csp6I	GTAC	1 cut(s)	668
CviAII	CATG	3 cut(s)	797, 910, 917
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	4 cut(s)	139, 281, 579, 647
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
DraI	TTTAAA	1 cut(s)	537
DriI	GACNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	5 cut(s)	330, 351, 411, 821, 969
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	5 cut(s)	330, 351, 411, 821, 969
EciI	GGCGGA	2 cut(s)	383, 615
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	2 cut(s)	94, 340
Eco57I	CTGAAG	3 cut(s)	489, 513, 993
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	3 cut(s)	800, 913, 920
FaiI	YATR	7 cut(s)	248, 563, 798, 870, 911, 918, 1003
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FatI	CATG	3 cut(s)	796, 909, 916
FauI	CCCGC	2 cut(s)	65, 152
FokI	GGATG	3 cut(s)	239, 407, 437
FriOI	GRGCYC	1 cut(s)	601
FspBI	CTAG	2 cut(s)	348, 1033
GlaI	GCGC	5 cut(s)	18, 163, 205, 884, 935
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	2 cut(s)	20, 886
HaeIII	GGCC	2 cut(s)	36, 86
HapII	CCGG	4 cut(s)	78, 113, 791, 802
HgaI	GACGC	2 cut(s)	260, 986
HhaI	GCGC	5 cut(s)	19, 164, 206, 885, 936
Hin1I	GRCGYC	3 cut(s)	103, 173, 997
Hin1II	CATG	3 cut(s)	800, 913, 920
Hin6I	GCGC	5 cut(s)	17, 162, 204, 883, 934
HinP1I	GCGC	5 cut(s)	17, 162, 204, 883, 934
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	1 cut(s)	989
HpaII	CCGG	4 cut(s)	78, 113, 791, 802
HphI	GGTGA	3 cut(s)	98, 181, 793
Hpy166II	GTNNAC	3 cut(s)	129, 235, 1030
Hpy188I	TCNGA	5 cut(s)	284, 456, 519, 825, 973
Hpy188III	TCNNGA	4 cut(s)	590, 620, 848, 986
Hpy8I	GTNNAC	3 cut(s)	129, 235, 1030
Hpy99I	CGWCG	3 cut(s)	105, 293, 326
HpyAV	CCTTC	3 cut(s)	47, 119, 778
HpyCH4III	ACNGT	6 cut(s)	51, 715, 730, 739, 1011, 1027
HpyCH4IV	ACGT	3 cut(s)	103, 173, 967
HpyCH4V	TGCA	6 cut(s)	575, 721, 764, 844, 896, 916
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 251, 380, 575
HpyF3I	CTNAG	4 cut(s)	139, 281, 579, 647
HpySE526I	ACGT	3 cut(s)	103, 173, 967
Hsp92I	GRCGYC	3 cut(s)	103, 173, 997
Hsp92II	CATG	3 cut(s)	800, 913, 920
HspAI	GCGC	5 cut(s)	17, 162, 204, 883, 934
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	3 cut(s)	31, 679, 1021
Lsp1109I	GCAGC	6 cut(s)	252, 587, 640, 748, 776, 918
LweI	GCATC	5 cut(s)	232, 451, 633, 748, 853
MaeI	CTAG	2 cut(s)	348, 1033
MaeII	ACGT	3 cut(s)	103, 173, 967
MaeIII	GTNAC	3 cut(s)	104, 169, 919
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MfeI	CAATTG	1 cut(s)	897
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	3 cut(s)	512, 897, 942
MlyI	GAGTC	1 cut(s)	983
MseI	TTAA	2 cut(s)	501, 536
MspA1I	CMGCKG	2 cut(s)	167, 578
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	4 cut(s)	78, 113, 791, 802
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	897
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	4 cut(s)	162, 167, 206, 934
MwoI	GCNNNNNNNGC	4 cut(s)	23, 251, 380, 575
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	3 cut(s)	800, 913, 920
NlaIV	GGNNCC	3 cut(s)	747, 789, 984
NmeAIII	GCCGAG	1 cut(s)	973
NmuCI	GTSAC	3 cut(s)	104, 169, 919
NspI	RCATGY	1 cut(s)	920
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 435
PleI	GAGTC	1 cut(s)	983
PpsI	GAGTC	1 cut(s)	983
PpuMI	RGGWCCY	1 cut(s)	340
Psp1406I	AACGTT	1 cut(s)	967
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	3 cut(s)	747, 789, 984
PspPI	GGNCC	2 cut(s)	94, 340
PspPPI	RGGWCCY	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	501, 536
Sau3AI	GATC	1 cut(s)	622
Sau96I	GGNCC	2 cut(s)	94, 340
SchI	GAGTC	1 cut(s)	983
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	5 cut(s)	232, 451, 633, 748, 853
SfcI	CTRYAG	4 cut(s)	246, 705, 753, 762
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	2 cut(s)	94, 340
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	512, 897, 942
SspMI	CTAG	2 cut(s)	348, 1033
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	6 cut(s)	51, 715, 730, 739, 1011, 1027
TaiI	ACGT	3 cut(s)	106, 176, 970
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	3 cut(s)	512, 897, 942
TauI	GCSGC	4 cut(s)	167, 209, 552, 934
Tru1I	TTAA	2 cut(s)	501, 536
Tru9I	TTAA	2 cut(s)	501, 536
TscAI	CASTG	2 cut(s)	655, 733
TseFI	GTSAC	3 cut(s)	104, 169, 919
TseI	GCWGC	6 cut(s)	265, 575, 653, 761, 764, 906
Tsp45I	GTSAC	3 cut(s)	104, 169, 919
TspDTI	ATGAA	5 cut(s)	29, 243, 411, 417, 785
TspRI	CASTG	2 cut(s)	655, 733
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	94, 340
XceI	RCATGY	1 cut(s)	920
XspI	CTAG	2 cut(s)	348, 1033
ZraI	GACGTC	2 cut(s)	104, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.