Homeodomain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G11270 |
| fragaria_vesca | FvH4_2g29450 |
| malus_domestica | MD08G1147000.v1.1 |
| prunus_persica | Prupe.1G478200_v2.0.a1 |
| pyrus_communis | pycom15g11070 |
| rosa_chinensis | RchiOBHm_Chr6g0298241 |
| rosa_laevigata | RLG00000011521 |
| rosa_roxburghii | Rroxscaffold_7G00169820 |
| rosa_rugosa | Rorug06G0279700 Rorug06G0279800 |
| rosa_samantha | Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200 |
| rosa_wichuraiana | Rw6G034060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 87 |
| AatII | GACGTC | 1 cut(s) | 176 |
| Acc36I | ACCTGC | 2 cut(s) | 706, 963 |
| AccB1I | GGYRCC | 1 cut(s) | 814 |
| AccI | GTMKAC | 2 cut(s) | 46, 798 |
| AccII | CGCG | 4 cut(s) | 162, 167, 206, 961 |
| AclI | AACGTT | 1 cut(s) | 994 |
| AclWI | GGATC | 1 cut(s) | 644 |
| AcoI | YGGCCR | 1 cut(s) | 84 |
| AcuI | CTGAAG | 4 cut(s) | 492, 540, 881, 1020 |
| AcyI | GRCGYC | 2 cut(s) | 173, 1024 |
| AfaI | GTAC | 1 cut(s) | 696 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 166 |
| AflII | CTTAAG | 1 cut(s) | 527 |
| AgsI | TTSAA | 5 cut(s) | 353, 512, 638, 887, 986 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 292 |
| AjiI | CACGTC | 1 cut(s) | 104 |
| AjnI | CCWGG | 1 cut(s) | 339 |
| AleI | CACNNNNGTG | 1 cut(s) | 806 |
| AluBI | AGCT | 6 cut(s) | 179, 518, 526, 560, 605, 610 |
| AluI | AGCT | 6 cut(s) | 179, 518, 526, 560, 605, 610 |
| Alw26I | GTCTC | 1 cut(s) | 850 |
| AlwI | GGATC | 1 cut(s) | 644 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 788 |
| AoxI | GGCC | 2 cut(s) | 34, 84 |
| ApeKI | GCWGC | 5 cut(s) | 262, 602, 680, 791, 933 |
| AspLEI | GCGC | 5 cut(s) | 19, 164, 206, 912, 963 |
| AspS9I | GGNCC | 3 cut(s) | 80, 94, 337 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 181 |
| AvaII | GGWCC | 3 cut(s) | 80, 94, 337 |
| BanI | GGYRCC | 1 cut(s) | 814 |
| BanII | GRGCYC | 1 cut(s) | 628 |
| BbsI | GAAGAC | 5 cut(s) | 45, 279, 321, 408, 435 |
| BbvI | GCAGC | 5 cut(s) | 249, 614, 667, 803, 945 |
| BceAI | ACGGC | 5 cut(s) | 49, 250, 304, 325, 454 |
| BciT130I | CCWGG | 1 cut(s) | 341 |
| BcoDI | GTCTC | 1 cut(s) | 850 |
| BfaI | CTAG | 2 cut(s) | 345, 1060 |
| BfmI | CTRYAG | 5 cut(s) | 243, 732, 780, 789, 804 |
| BfoI | RGCGCY | 2 cut(s) | 20, 913 |
| BfrI | CTTAAG | 1 cut(s) | 527 |
| BfuAI | ACCTGC | 2 cut(s) | 706, 963 |
| BisI | GCNGC | 9 cut(s) | 165, 207, 263, 577, 603, 681, 792, 934, 959 |
| BlpI | GCTNAGC | 2 cut(s) | 180, 606 |
| BlsI | GCNGC | 9 cut(s) | 166, 208, 264, 578, 604, 682, 793, 935, 960 |
| Bme1390I | CCNGG | 1 cut(s) | 341 |
| Bme18I | GGWCC | 3 cut(s) | 80, 94, 337 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 292 |
| BmgBI | CACGTC | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 3 cut(s) | 80, 94, 337 |
| BmiI | GGNNCC | 3 cut(s) | 774, 816, 1011 |
| BmrFI | CCNGG | 1 cut(s) | 341 |
| BmsI | GCATC | 4 cut(s) | 229, 454, 660, 880 |
| BpiI | GAAGAC | 5 cut(s) | 45, 279, 321, 408, 435 |
| BpmI | CTGGAG | 1 cut(s) | 287 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 180, 606 |
| BsaHI | GRCGYC | 2 cut(s) | 173, 1024 |
| BsaJI | CCNNGG | 1 cut(s) | 165 |
| BsaWI | WCCGGW | 1 cut(s) | 77 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 166 |
| Bse118I | RCCGGY | 2 cut(s) | 82, 817 |
| Bse1I | ACTGG | 4 cut(s) | 87, 366, 585, 769 |
| BseBI | CCWGG | 1 cut(s) | 341 |
| BseDI | CCNNGG | 1 cut(s) | 165 |
| BseGI | GGATG | 4 cut(s) | 125, 229, 397, 427 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BseMII | CTCAG | 4 cut(s) | 194, 292, 597, 688 |
| BseNI | ACTGG | 4 cut(s) | 87, 366, 585, 769 |
| BseRI | GAGGAG | 4 cut(s) | 233, 431, 506, 509 |
| BseXI | GCAGC | 5 cut(s) | 249, 614, 667, 803, 945 |
| Bsh1236I | CGCG | 4 cut(s) | 162, 167, 206, 961 |
| Bsh1285I | CGRYCG | 2 cut(s) | 574, 798 |
| BshFI | GGCC | 2 cut(s) | 36, 86 |
| BshNI | GGYRCC | 1 cut(s) | 814 |
| BsiEI | CGRYCG | 2 cut(s) | 574, 798 |
| BsiSI | CCGG | 5 cut(s) | 78, 83, 113, 818, 829 |
| BslFI | GGGAC | 1 cut(s) | 449 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BsmAI | GTCTC | 1 cut(s) | 850 |
| BsmFI | GGGAC | 1 cut(s) | 449 |
| BsnI | GGCC | 2 cut(s) | 36, 86 |
| Bsp1286I | GDGCHC | 1 cut(s) | 628 |
| Bsp143I | GATC | 1 cut(s) | 649 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 180, 606 |
| BspANI | GGCC | 2 cut(s) | 36, 86 |
| BspCNI | CTCAG | 4 cut(s) | 193, 291, 598, 687 |
| BspFNI | CGCG | 4 cut(s) | 162, 167, 206, 961 |
| BspLI | GGNNCC | 3 cut(s) | 774, 816, 1011 |
| BspMAI | CTGCAG | 2 cut(s) | 793, 808 |
| BspMI | ACCTGC | 2 cut(s) | 706, 963 |
| BspPI | GGATC | 1 cut(s) | 644 |
| BspT107I | GGYRCC | 1 cut(s) | 814 |
| BspTI | CTTAAG | 1 cut(s) | 527 |
| BsrFI | RCCGGY | 2 cut(s) | 82, 817 |
| BsrI | ACTGG | 4 cut(s) | 87, 366, 585, 769 |
| BssAI | RCCGGY | 2 cut(s) | 82, 817 |
| BssECI | CCNNGG | 1 cut(s) | 165 |
| BssMI | GATC | 1 cut(s) | 649 |
| BssNI | GRCGYC | 2 cut(s) | 173, 1024 |
| Bst2UI | CCWGG | 1 cut(s) | 341 |
| Bst4CI | ACNGT | 5 cut(s) | 51, 742, 757, 1038, 1054 |
| Bst6I | CTCTTC | 5 cut(s) | 327, 348, 408, 848, 996 |
| BstACI | GRCGYC | 2 cut(s) | 173, 1024 |
| BstAFI | CTTAAG | 1 cut(s) | 527 |
| BstC8I | GCNNGC | 2 cut(s) | 118, 135 |
| BstDEI | CTNAG | 4 cut(s) | 180, 278, 606, 674 |
| BstDSI | CCRYGG | 1 cut(s) | 165 |
| BstF5I | GGATG | 4 cut(s) | 125, 229, 397, 427 |
| BstFNI | CGCG | 4 cut(s) | 162, 167, 206, 961 |
| BstH2I | RGCGCY | 2 cut(s) | 20, 913 |
| BstHHI | GCGC | 5 cut(s) | 19, 164, 206, 912, 963 |
| BstKTI | GATC | 1 cut(s) | 652 |
| BstMAI | GTCTC | 1 cut(s) | 850 |
| BstMBI | GATC | 1 cut(s) | 649 |
| BstMCI | CGRYCG | 2 cut(s) | 574, 798 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 23, 248, 377, 602 |
| BstNI | CCWGG | 1 cut(s) | 341 |
| BstNSI | RCATGY | 1 cut(s) | 947 |
| BstSCI | CCNGG | 1 cut(s) | 339 |
| BstSFI | CTRYAG | 5 cut(s) | 243, 732, 780, 789, 804 |
| BstUI | CGCG | 4 cut(s) | 162, 167, 206, 961 |
| BstV1I | GCAGC | 5 cut(s) | 249, 614, 667, 803, 945 |
| BstV2I | GAAGAC | 5 cut(s) | 45, 279, 321, 408, 435 |
| BsuRI | GGCC | 2 cut(s) | 36, 86 |
| BtgI | CCRYGG | 1 cut(s) | 165 |
| BtgZI | GCGATG | 3 cut(s) | 252, 456, 477 |
| BtrI | CACGTC | 1 cut(s) | 104 |
| BtsCI | GGATG | 4 cut(s) | 125, 229, 397, 427 |
| BtsI | GCAGTG | 2 cut(s) | 801, 813 |
| BtsIMutI | CAGTG | 4 cut(s) | 682, 753, 801, 813 |
| BveI | ACCTGC | 2 cut(s) | 706, 963 |
| Cac8I | GCNNGC | 2 cut(s) | 118, 135 |
| CaiI | CAGNNNCTG | 1 cut(s) | 788 |
| CfoI | GCGC | 5 cut(s) | 19, 164, 206, 912, 963 |
| Cfr10I | RCCGGY | 2 cut(s) | 82, 817 |
| Cfr13I | GGNCC | 3 cut(s) | 80, 94, 337 |
| Cfr42I | CCGCGG | 1 cut(s) | 168 |
| CpoI | CGGWCCG | 1 cut(s) | 80 |
| CseI | GACGC | 2 cut(s) | 257, 1013 |
| Csp6I | GTAC | 1 cut(s) | 695 |
| CspI | CGGWCCG | 1 cut(s) | 80 |
| CviAII | CATG | 2 cut(s) | 824, 944 |
| CviQI | GTAC | 1 cut(s) | 695 |
| DdeI | CTNAG | 4 cut(s) | 180, 278, 606, 674 |
| DpnI | GATC | 1 cut(s) | 651 |
| DpnII | GATC | 1 cut(s) | 649 |
| DraI | TTTAAA | 1 cut(s) | 564 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 87 |
| DriI | GACNNNNNGTC | 1 cut(s) | 292 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 87 |
| EaeI | YGGCCR | 1 cut(s) | 84 |
| Eam1104I | CTCTTC | 5 cut(s) | 327, 348, 408, 848, 996 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 292 |
| EarI | CTCTTC | 5 cut(s) | 327, 348, 408, 848, 996 |
| EciI | GGCGGA | 2 cut(s) | 380, 642 |
| Eco24I | GRGCYC | 1 cut(s) | 628 |
| Eco47I | GGWCC | 3 cut(s) | 80, 94, 337 |
| Eco57I | CTGAAG | 4 cut(s) | 492, 540, 881, 1020 |
| EcoO109I | RGGNCCY | 1 cut(s) | 337 |
| EcoRII | CCWGG | 1 cut(s) | 339 |
| EcoT38I | GRGCYC | 1 cut(s) | 628 |
| FaeI | CATG | 2 cut(s) | 827, 947 |
| FaiI | YATR | 7 cut(s) | 245, 590, 825, 897, 938, 945, 1030 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 858, 890 |
| FaqI | GGGAC | 1 cut(s) | 449 |
| FatI | CATG | 2 cut(s) | 823, 943 |
| FauI | CCCGC | 1 cut(s) | 65 |
| FblI | GTMKAC | 2 cut(s) | 46, 798 |
| Fnu4HI | GCNGC | 9 cut(s) | 165, 207, 263, 577, 603, 681, 792, 934, 959 |
| FokI | GGATG | 4 cut(s) | 112, 236, 404, 434 |
| FriOI | GRGCYC | 1 cut(s) | 628 |
| Fsp4HI | GCNGC | 9 cut(s) | 165, 207, 263, 577, 603, 681, 792, 934, 959 |
| FspBI | CTAG | 2 cut(s) | 345, 1060 |
| GlaI | GCGC | 5 cut(s) | 18, 163, 205, 911, 962 |
| GluI | GCNGC | 9 cut(s) | 165, 207, 263, 577, 603, 681, 792, 934, 959 |
| GsuI | CTGGAG | 1 cut(s) | 287 |
| HaeII | RGCGCY | 2 cut(s) | 20, 913 |
| HaeIII | GGCC | 2 cut(s) | 36, 86 |
| HapII | CCGG | 5 cut(s) | 78, 83, 113, 818, 829 |
| HgaI | GACGC | 2 cut(s) | 257, 1013 |
| HhaI | GCGC | 5 cut(s) | 19, 164, 206, 912, 963 |
| Hin1I | GRCGYC | 2 cut(s) | 173, 1024 |
| Hin1II | CATG | 2 cut(s) | 827, 947 |
| Hin6I | GCGC | 5 cut(s) | 17, 162, 204, 910, 961 |
| HinP1I | GCGC | 5 cut(s) | 17, 162, 204, 910, 961 |
| HincII | GTYRAC | 2 cut(s) | 799, 1057 |
| HindII | GTYRAC | 2 cut(s) | 799, 1057 |
| HindIII | AAGCTT | 1 cut(s) | 524 |
| HinfI | GANTC | 1 cut(s) | 1016 |
| HpaII | CCGG | 5 cut(s) | 78, 83, 113, 818, 829 |
| HphI | GGTGA | 2 cut(s) | 98, 181 |
| Hpy166II | GTNNAC | 4 cut(s) | 47, 232, 799, 1057 |
| Hpy188I | TCNGA | 5 cut(s) | 281, 459, 546, 852, 1000 |
| Hpy188III | TCNNGA | 4 cut(s) | 617, 647, 875, 1013 |
| Hpy8I | GTNNAC | 4 cut(s) | 47, 232, 799, 1057 |
| Hpy99I | CGWCG | 2 cut(s) | 290, 323 |
| HpyAV | CCTTC | 4 cut(s) | 47, 119, 148, 805 |
| HpyCH4III | ACNGT | 5 cut(s) | 51, 742, 757, 1038, 1054 |
| HpyCH4IV | ACGT | 3 cut(s) | 103, 173, 994 |
| HpyCH4V | TGCA | 6 cut(s) | 602, 791, 806, 871, 923, 943 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 23, 248, 377, 602 |
| HpyF3I | CTNAG | 4 cut(s) | 180, 278, 606, 674 |
| HpySE526I | ACGT | 3 cut(s) | 103, 173, 994 |
| Hsp92I | GRCGYC | 2 cut(s) | 173, 1024 |
| Hsp92II | CATG | 2 cut(s) | 827, 947 |
| HspAI | GCGC | 5 cut(s) | 17, 162, 204, 910, 961 |
| KspI | CCGCGG | 1 cut(s) | 168 |
| Kzo9I | GATC | 1 cut(s) | 649 |
| LmnI | GCTCC | 2 cut(s) | 31, 1048 |
| Lsp1109I | GCAGC | 5 cut(s) | 249, 614, 667, 803, 945 |
| LweI | GCATC | 4 cut(s) | 229, 454, 660, 880 |
| MaeI | CTAG | 2 cut(s) | 345, 1060 |
| MaeII | ACGT | 3 cut(s) | 103, 173, 994 |
| MaeIII | GTNAC | 3 cut(s) | 104, 169, 946 |
| MalI | GATC | 1 cut(s) | 651 |
| MboI | GATC | 1 cut(s) | 649 |
| MfeI | CAATTG | 1 cut(s) | 924 |
| MhlI | GDGCHC | 1 cut(s) | 628 |
| MluCI | AATT | 3 cut(s) | 539, 924, 969 |
| MlyI | GAGTC | 1 cut(s) | 1010 |
| MseI | TTAA | 4 cut(s) | 191, 528, 563, 705 |
| MslI | CAYNNNNRTG | 1 cut(s) | 806 |
| MspA1I | CMGCKG | 3 cut(s) | 167, 605, 794 |
| MspCI | CTTAAG | 1 cut(s) | 527 |
| MspI | CCGG | 5 cut(s) | 78, 83, 113, 818, 829 |
| MspR9I | CCNGG | 1 cut(s) | 341 |
| MunI | CAATTG | 1 cut(s) | 924 |
| MvaI | CCWGG | 1 cut(s) | 341 |
| MvnI | CGCG | 4 cut(s) | 162, 167, 206, 961 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 23, 248, 377, 602 |
| NdeII | GATC | 1 cut(s) | 649 |
| NlaIII | CATG | 2 cut(s) | 827, 947 |
| NlaIV | GGNNCC | 3 cut(s) | 774, 816, 1011 |
| NmeAIII | GCCGAG | 1 cut(s) | 1000 |
| NmuCI | GTSAC | 3 cut(s) | 104, 169, 946 |
| NspI | RCATGY | 1 cut(s) | 947 |
| OliI | CACNNNNGTG | 1 cut(s) | 806 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 315, 438 |
| PkrI | GCNGC | 9 cut(s) | 166, 208, 264, 578, 604, 682, 793, 935, 960 |
| PleI | GAGTC | 1 cut(s) | 1010 |
| PpsI | GAGTC | 1 cut(s) | 1010 |
| PpuMI | RGGWCCY | 1 cut(s) | 337 |
| Psp1406I | AACGTT | 1 cut(s) | 994 |
| Psp5II | RGGWCCY | 1 cut(s) | 337 |
| Psp6I | CCWGG | 1 cut(s) | 339 |
| PspGI | CCWGG | 1 cut(s) | 339 |
| PspN4I | GGNNCC | 3 cut(s) | 774, 816, 1011 |
| PspPI | GGNCC | 3 cut(s) | 80, 94, 337 |
| PspPPI | RGGWCCY | 1 cut(s) | 337 |
| PstI | CTGCAG | 2 cut(s) | 793, 808 |
| PstNI | CAGNNNCTG | 1 cut(s) | 788 |
| PvuII | CAGCTG | 1 cut(s) | 605 |
| RsaI | GTAC | 1 cut(s) | 696 |
| RsaNI | GTAC | 1 cut(s) | 695 |
| RseI | CAYNNNNRTG | 1 cut(s) | 806 |
| Rsr2I | CGGWCCG | 1 cut(s) | 80 |
| RsrII | CGGWCCG | 1 cut(s) | 80 |
| SacII | CCGCGG | 1 cut(s) | 168 |
| SalI | GTCGAC | 1 cut(s) | 797 |
| SaqAI | TTAA | 4 cut(s) | 191, 528, 563, 705 |
| SatI | GCNGC | 9 cut(s) | 165, 207, 263, 577, 603, 681, 792, 934, 959 |
| Sau3AI | GATC | 1 cut(s) | 649 |
| Sau96I | GGNCC | 3 cut(s) | 80, 94, 337 |
| SchI | GAGTC | 1 cut(s) | 1010 |
| ScrFI | CCNGG | 1 cut(s) | 341 |
| SduI | GDGCHC | 1 cut(s) | 628 |
| SfaNI | GCATC | 4 cut(s) | 229, 454, 660, 880 |
| SfcI | CTRYAG | 5 cut(s) | 243, 732, 780, 789, 804 |
| Sfr303I | CCGCGG | 1 cut(s) | 168 |
| SgrBI | CCGCGG | 1 cut(s) | 168 |
| SinI | GGWCC | 3 cut(s) | 80, 94, 337 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 806 |
| SmlI | CTYRAG | 1 cut(s) | 527 |
| SmoI | CTYRAG | 1 cut(s) | 527 |
| Sse9I | AATT | 3 cut(s) | 539, 924, 969 |
| SspMI | CTAG | 2 cut(s) | 345, 1060 |
| StyD4I | CCNGG | 1 cut(s) | 339 |
| TaaI | ACNGT | 5 cut(s) | 51, 742, 757, 1038, 1054 |
| TaiI | ACGT | 3 cut(s) | 106, 176, 997 |
| TaqI | TCGA | 1 cut(s) | 798 |
| TaqII | GACCGA | 1 cut(s) | 560 |
| TasI | AATT | 3 cut(s) | 539, 924, 969 |
| TauI | GCSGC | 4 cut(s) | 167, 209, 579, 961 |
| Tru1I | TTAA | 4 cut(s) | 191, 528, 563, 705 |
| Tru9I | TTAA | 4 cut(s) | 191, 528, 563, 705 |
| TscAI | CASTG | 4 cut(s) | 682, 760, 808, 813 |
| TseFI | GTSAC | 3 cut(s) | 104, 169, 946 |
| TseI | GCWGC | 5 cut(s) | 262, 602, 680, 791, 933 |
| Tsp45I | GTSAC | 3 cut(s) | 104, 169, 946 |
| TspDTI | ATGAA | 5 cut(s) | 29, 240, 408, 414, 812 |
| TspGWI | ACGGA | 1 cut(s) | 137 |
| TspRI | CASTG | 4 cut(s) | 682, 760, 808, 813 |
| Vha464I | CTTAAG | 1 cut(s) | 527 |
| VpaK11BI | GGWCC | 3 cut(s) | 80, 94, 337 |
| XceI | RCATGY | 1 cut(s) | 947 |
| XmiI | GTMKAC | 2 cut(s) | 46, 798 |
| XspI | CTAG | 2 cut(s) | 345, 1060 |
| ZraI | GACGTC | 1 cut(s) | 174 |