RchiOBHm_Chr6g0298241

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
59735519 .. 59738340
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26771

Sequence Viewer

Length: 1062 bp
ATGGCTTTCGCTTCGGCGCTCAACGCTCCTAACGGCCTTCATCGTCTACCGTCTTCCCGCCACGAAACAACCCGAACCGGACCGGCCAGTCTGGTCCTGCCACGTCACCTTCCGGCTCGCTACTCATCCACGCTCGCCTTCGCCCTCCGTAAGAACCACCGCGCCGCGGTGACGTCAGCTCAGCCGAAGTTAAAGAAGAAAAGCGCGGCGAAGAATGAGGAGGATGAAGTGGACGGCGATGCTATAGACGCTTTGTTTTCGCTGCTGGAGGAAGACCTCAGAAACGACGGCGTGTCGTTTGATGATGACGGCGAAGACGACGAGATAAGTGAAGAGGACCTGGCTAGGCTTGAAGAGGAACTGGCGGAGGCGTTTGGTGCGGTTGATGAGGATGAAGATGAAGACGAGGAAGAAGAGGAGGATGACGAAGACGGGGACGGCGATGTTGATGTTGTTCAGAGCGATGCGACTGAAGAAGAAGAAGAAGATGAGGAGGAGGACGATGAGGTTGAAGTAGCTGTGAAGCTTAAGACTTGGCAATTTCGGAGATTGGCTTCAGCTTTAAAAGTCGGTCGCCGCAAAACCAGTATAAAAGCCCTTGCAGCTGAGCTTTGTCTTGACAGGGCTCTTGTTCTTCAAATGCTTCGTGATCCGCCTCCAAATCTTTTGATGCTCAGTGCTGCTCTACCTGATGTACCTGCTCTTAAAAAATCTCTGCCTGAACCAAAGCCTGTAGAAACTGTTGTGGAAACCACTGTGGAAACTGGTGTGGAACCTACTACAGATACTGCAGCGGTCGACACTGCAGTGAAGGTGCCGGTTCATGTCCGGCAACAAAAGTTTTCTGGTCAGAAGAGACTGAAGAAAGTGCATCTTGACACCCTTGAAAGAGTTTATAGAAGAACAAAGCGCCCAACAAATGCAATTGTCAGCAGCATAGTGCATGTGACAAACCTGCCGCGCAAAAGAATTGTGAAATGGTTTGAAGAAAAACGTTCTGAAGAGGGGGTTCCTGACTCTCGGCGTCCATATCAACCGTCTGCTCCTACTACTGTCAACTAG

Protein Analysis

353

Amino Acids

39.31

Weight (kDa)

4.72

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11270
fragaria_vesca FvH4_2g29450
malus_domestica MD08G1147000.v1.1
prunus_persica Prupe.1G478200_v2.0.a1
pyrus_communis pycom15g11070
rosa_chinensis RchiOBHm_Chr6g0298241
rosa_laevigata RLG00000011521
rosa_roxburghii Rroxscaffold_7G00169820
rosa_rugosa Rorug06G0279700 Rorug06G0279800
rosa_samantha Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana Rw6G034060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 87
AatII GACGTC 1 cut(s) 176
Acc36I ACCTGC 2 cut(s) 706, 963
AccB1I GGYRCC 1 cut(s) 814
AccI GTMKAC 2 cut(s) 46, 798
AccII CGCG 4 cut(s) 162, 167, 206, 961
AclI AACGTT 1 cut(s) 994
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 4 cut(s) 492, 540, 881, 1020
AcyI GRCGYC 2 cut(s) 173, 1024
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 1 cut(s) 166
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 5 cut(s) 353, 512, 638, 887, 986
AhdI GACNNNNNGTC 1 cut(s) 292
AjiI CACGTC 1 cut(s) 104
AjnI CCWGG 1 cut(s) 339
AleI CACNNNNGTG 1 cut(s) 806
AluBI AGCT 6 cut(s) 179, 518, 526, 560, 605, 610
AluI AGCT 6 cut(s) 179, 518, 526, 560, 605, 610
Alw26I GTCTC 1 cut(s) 850
AlwI GGATC 1 cut(s) 644
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 2 cut(s) 34, 84
ApeKI GCWGC 5 cut(s) 262, 602, 680, 791, 933
AspLEI GCGC 5 cut(s) 19, 164, 206, 912, 963
AspS9I GGNCC 3 cut(s) 80, 94, 337
AsuHPI GGTGA 2 cut(s) 98, 181
AvaII GGWCC 3 cut(s) 80, 94, 337
BanI GGYRCC 1 cut(s) 814
BanII GRGCYC 1 cut(s) 628
BbsI GAAGAC 5 cut(s) 45, 279, 321, 408, 435
BbvI GCAGC 5 cut(s) 249, 614, 667, 803, 945
BceAI ACGGC 5 cut(s) 49, 250, 304, 325, 454
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 2 cut(s) 345, 1060
BfmI CTRYAG 5 cut(s) 243, 732, 780, 789, 804
BfoI RGCGCY 2 cut(s) 20, 913
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 2 cut(s) 706, 963
BisI GCNGC 9 cut(s) 165, 207, 263, 577, 603, 681, 792, 934, 959
BlpI GCTNAGC 2 cut(s) 180, 606
BlsI GCNGC 9 cut(s) 166, 208, 264, 578, 604, 682, 793, 935, 960
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 3 cut(s) 80, 94, 337
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 104
BmgT120I GGNCC 3 cut(s) 80, 94, 337
BmiI GGNNCC 3 cut(s) 774, 816, 1011
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 4 cut(s) 229, 454, 660, 880
BpiI GAAGAC 5 cut(s) 45, 279, 321, 408, 435
BpmI CTGGAG 1 cut(s) 287
Bpu1102I GCTNAGC 2 cut(s) 180, 606
BsaHI GRCGYC 2 cut(s) 173, 1024
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 2 cut(s) 82, 817
Bse1I ACTGG 4 cut(s) 87, 366, 585, 769
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 4 cut(s) 125, 229, 397, 427
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 4 cut(s) 194, 292, 597, 688
BseNI ACTGG 4 cut(s) 87, 366, 585, 769
BseRI GAGGAG 4 cut(s) 233, 431, 506, 509
BseXI GCAGC 5 cut(s) 249, 614, 667, 803, 945
Bsh1236I CGCG 4 cut(s) 162, 167, 206, 961
Bsh1285I CGRYCG 2 cut(s) 574, 798
BshFI GGCC 2 cut(s) 36, 86
BshNI GGYRCC 1 cut(s) 814
BsiEI CGRYCG 2 cut(s) 574, 798
BsiSI CCGG 5 cut(s) 78, 83, 113, 818, 829
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 850
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 2 cut(s) 36, 86
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 1 cut(s) 649
Bsp1720I GCTNAGC 2 cut(s) 180, 606
BspANI GGCC 2 cut(s) 36, 86
BspCNI CTCAG 4 cut(s) 193, 291, 598, 687
BspFNI CGCG 4 cut(s) 162, 167, 206, 961
BspLI GGNNCC 3 cut(s) 774, 816, 1011
BspMAI CTGCAG 2 cut(s) 793, 808
BspMI ACCTGC 2 cut(s) 706, 963
BspPI GGATC 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 814
BspTI CTTAAG 1 cut(s) 527
BsrFI RCCGGY 2 cut(s) 82, 817
BsrI ACTGG 4 cut(s) 87, 366, 585, 769
BssAI RCCGGY 2 cut(s) 82, 817
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 649
BssNI GRCGYC 2 cut(s) 173, 1024
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 5 cut(s) 51, 742, 757, 1038, 1054
Bst6I CTCTTC 5 cut(s) 327, 348, 408, 848, 996
BstACI GRCGYC 2 cut(s) 173, 1024
BstAFI CTTAAG 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 118, 135
BstDEI CTNAG 4 cut(s) 180, 278, 606, 674
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 4 cut(s) 125, 229, 397, 427
BstFNI CGCG 4 cut(s) 162, 167, 206, 961
BstH2I RGCGCY 2 cut(s) 20, 913
BstHHI GCGC 5 cut(s) 19, 164, 206, 912, 963
BstKTI GATC 1 cut(s) 652
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 1 cut(s) 649
BstMCI CGRYCG 2 cut(s) 574, 798
BstMWI GCNNNNNNNGC 4 cut(s) 23, 248, 377, 602
BstNI CCWGG 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 947
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 5 cut(s) 243, 732, 780, 789, 804
BstUI CGCG 4 cut(s) 162, 167, 206, 961
BstV1I GCAGC 5 cut(s) 249, 614, 667, 803, 945
BstV2I GAAGAC 5 cut(s) 45, 279, 321, 408, 435
BsuRI GGCC 2 cut(s) 36, 86
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 3 cut(s) 252, 456, 477
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 4 cut(s) 125, 229, 397, 427
BtsI GCAGTG 2 cut(s) 801, 813
BtsIMutI CAGTG 4 cut(s) 682, 753, 801, 813
BveI ACCTGC 2 cut(s) 706, 963
Cac8I GCNNGC 2 cut(s) 118, 135
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 5 cut(s) 19, 164, 206, 912, 963
Cfr10I RCCGGY 2 cut(s) 82, 817
Cfr13I GGNCC 3 cut(s) 80, 94, 337
Cfr42I CCGCGG 1 cut(s) 168
CpoI CGGWCCG 1 cut(s) 80
CseI GACGC 2 cut(s) 257, 1013
Csp6I GTAC 1 cut(s) 695
CspI CGGWCCG 1 cut(s) 80
CviAII CATG 2 cut(s) 824, 944
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 4 cut(s) 180, 278, 606, 674
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
DraI TTTAAA 1 cut(s) 564
DrdI GACNNNNNNGTC 1 cut(s) 87
DriI GACNNNNNGTC 1 cut(s) 292
DseDI GACNNNNNNGTC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 5 cut(s) 327, 348, 408, 848, 996
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 5 cut(s) 327, 348, 408, 848, 996
EciI GGCGGA 2 cut(s) 380, 642
Eco24I GRGCYC 1 cut(s) 628
Eco47I GGWCC 3 cut(s) 80, 94, 337
Eco57I CTGAAG 4 cut(s) 492, 540, 881, 1020
EcoO109I RGGNCCY 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 628
FaeI CATG 2 cut(s) 827, 947
FaiI YATR 7 cut(s) 245, 590, 825, 897, 938, 945, 1030
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 1 cut(s) 449
FatI CATG 2 cut(s) 823, 943
FauI CCCGC 1 cut(s) 65
FblI GTMKAC 2 cut(s) 46, 798
Fnu4HI GCNGC 9 cut(s) 165, 207, 263, 577, 603, 681, 792, 934, 959
FokI GGATG 4 cut(s) 112, 236, 404, 434
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 9 cut(s) 165, 207, 263, 577, 603, 681, 792, 934, 959
FspBI CTAG 2 cut(s) 345, 1060
GlaI GCGC 5 cut(s) 18, 163, 205, 911, 962
GluI GCNGC 9 cut(s) 165, 207, 263, 577, 603, 681, 792, 934, 959
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 2 cut(s) 20, 913
HaeIII GGCC 2 cut(s) 36, 86
HapII CCGG 5 cut(s) 78, 83, 113, 818, 829
HgaI GACGC 2 cut(s) 257, 1013
HhaI GCGC 5 cut(s) 19, 164, 206, 912, 963
Hin1I GRCGYC 2 cut(s) 173, 1024
Hin1II CATG 2 cut(s) 827, 947
Hin6I GCGC 5 cut(s) 17, 162, 204, 910, 961
HinP1I GCGC 5 cut(s) 17, 162, 204, 910, 961
HincII GTYRAC 2 cut(s) 799, 1057
HindII GTYRAC 2 cut(s) 799, 1057
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 1 cut(s) 1016
HpaII CCGG 5 cut(s) 78, 83, 113, 818, 829
HphI GGTGA 2 cut(s) 98, 181
Hpy166II GTNNAC 4 cut(s) 47, 232, 799, 1057
Hpy188I TCNGA 5 cut(s) 281, 459, 546, 852, 1000
Hpy188III TCNNGA 4 cut(s) 617, 647, 875, 1013
Hpy8I GTNNAC 4 cut(s) 47, 232, 799, 1057
Hpy99I CGWCG 2 cut(s) 290, 323
HpyAV CCTTC 4 cut(s) 47, 119, 148, 805
HpyCH4III ACNGT 5 cut(s) 51, 742, 757, 1038, 1054
HpyCH4IV ACGT 3 cut(s) 103, 173, 994
HpyCH4V TGCA 6 cut(s) 602, 791, 806, 871, 923, 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 248, 377, 602
HpyF3I CTNAG 4 cut(s) 180, 278, 606, 674
HpySE526I ACGT 3 cut(s) 103, 173, 994
Hsp92I GRCGYC 2 cut(s) 173, 1024
Hsp92II CATG 2 cut(s) 827, 947
HspAI GCGC 5 cut(s) 17, 162, 204, 910, 961
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 1 cut(s) 649
LmnI GCTCC 2 cut(s) 31, 1048
Lsp1109I GCAGC 5 cut(s) 249, 614, 667, 803, 945
LweI GCATC 4 cut(s) 229, 454, 660, 880
MaeI CTAG 2 cut(s) 345, 1060
MaeII ACGT 3 cut(s) 103, 173, 994
MaeIII GTNAC 3 cut(s) 104, 169, 946
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MfeI CAATTG 1 cut(s) 924
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 3 cut(s) 539, 924, 969
MlyI GAGTC 1 cut(s) 1010
MseI TTAA 4 cut(s) 191, 528, 563, 705
MslI CAYNNNNRTG 1 cut(s) 806
MspA1I CMGCKG 3 cut(s) 167, 605, 794
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 5 cut(s) 78, 83, 113, 818, 829
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 924
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 4 cut(s) 162, 167, 206, 961
MwoI GCNNNNNNNGC 4 cut(s) 23, 248, 377, 602
NdeII GATC 1 cut(s) 649
NlaIII CATG 2 cut(s) 827, 947
NlaIV GGNNCC 3 cut(s) 774, 816, 1011
NmeAIII GCCGAG 1 cut(s) 1000
NmuCI GTSAC 3 cut(s) 104, 169, 946
NspI RCATGY 1 cut(s) 947
OliI CACNNNNGTG 1 cut(s) 806
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 438
PkrI GCNGC 9 cut(s) 166, 208, 264, 578, 604, 682, 793, 935, 960
PleI GAGTC 1 cut(s) 1010
PpsI GAGTC 1 cut(s) 1010
PpuMI RGGWCCY 1 cut(s) 337
Psp1406I AACGTT 1 cut(s) 994
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 774, 816, 1011
PspPI GGNCC 3 cut(s) 80, 94, 337
PspPPI RGGWCCY 1 cut(s) 337
PstI CTGCAG 2 cut(s) 793, 808
PstNI CAGNNNCTG 1 cut(s) 788
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
RseI CAYNNNNRTG 1 cut(s) 806
Rsr2I CGGWCCG 1 cut(s) 80
RsrII CGGWCCG 1 cut(s) 80
SacII CCGCGG 1 cut(s) 168
SalI GTCGAC 1 cut(s) 797
SaqAI TTAA 4 cut(s) 191, 528, 563, 705
SatI GCNGC 9 cut(s) 165, 207, 263, 577, 603, 681, 792, 934, 959
Sau3AI GATC 1 cut(s) 649
Sau96I GGNCC 3 cut(s) 80, 94, 337
SchI GAGTC 1 cut(s) 1010
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 4 cut(s) 229, 454, 660, 880
SfcI CTRYAG 5 cut(s) 243, 732, 780, 789, 804
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SinI GGWCC 3 cut(s) 80, 94, 337
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 3 cut(s) 539, 924, 969
SspMI CTAG 2 cut(s) 345, 1060
StyD4I CCNGG 1 cut(s) 339
TaaI ACNGT 5 cut(s) 51, 742, 757, 1038, 1054
TaiI ACGT 3 cut(s) 106, 176, 997
TaqI TCGA 1 cut(s) 798
TaqII GACCGA 1 cut(s) 560
TasI AATT 3 cut(s) 539, 924, 969
TauI GCSGC 4 cut(s) 167, 209, 579, 961
Tru1I TTAA 4 cut(s) 191, 528, 563, 705
Tru9I TTAA 4 cut(s) 191, 528, 563, 705
TscAI CASTG 4 cut(s) 682, 760, 808, 813
TseFI GTSAC 3 cut(s) 104, 169, 946
TseI GCWGC 5 cut(s) 262, 602, 680, 791, 933
Tsp45I GTSAC 3 cut(s) 104, 169, 946
TspDTI ATGAA 5 cut(s) 29, 240, 408, 414, 812
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 4 cut(s) 682, 760, 808, 813
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 3 cut(s) 80, 94, 337
XceI RCATGY 1 cut(s) 947
XmiI GTMKAC 2 cut(s) 46, 798
XspI CTAG 2 cut(s) 345, 1060
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.