Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Forward (+)

14811775 .. 14813968

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1147000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTTTCGCTTCCGCGCTCGACACGCCCAAGGGGCTTCACTTTCTACCGTTACCGTCTTCATCCCGCCACGAACGGTCACCCACCAATCTTGTTCTGCCACGGCACTTCCCGACTCGGTTCTCGTCCACCATCGCCTTGGCTCGCCGCCGGAACCACCGCGCCGAAGTGGCGCCCTCAAGAACGAAGATAAAGAAGAGAAGTTTGGGGAATAAGGAAGTGAAGGAGGTGGAGGAGGAGGATGTGGATGAGGATGCGATTGATGCGCTGTTTAGGTTGCTGGAGGAGGATCTCAAGAATGACGACGCGTCATTTGACGACGAGGATTTAACGGAAGAAGAGCTTGCTAAGCTCGAGCAGGAAGTGGCAGAGGCACTGGGAGTTGACGGTGATGATGATGACGATGAGGAAGAGGAGGAGGAGGAGGTTGAAGACGATGACGGTGTTGTTGAGAGCTATGCCGAAGAAGATGAGGAGGTGGAGGAGGAAGAGGAAGAGGAAACTCCGGTGAAGCTGAAGACTTGGCAGATGCGGAGATTGGCTGCTGCTTTGAAAGTTGGTCGGCGCAAAACAAGCATAAAAACTCTTGCAGCTGAGCTTTGTCTTGACAGGGCTGTTGTTCTCGAATTGCTTCGTGAGCCCCCTCCAAGTCTTTTGATCATGTGTGCTGCTTTGCCTGATGAACCTGCGACAGTGGTATCTGTGTCCCAACCAAATTCTGTAGAAACTGTTGTGGAAACAACTGGAGAAACCATGGTGGAAACGACTACAGATTCTGTAGAGCTTGAAAGTGCAGCGAGGGTGCCCGTTCATGCCAGACAACAAAAGTTTTCTGCTCAAAAGAGGCTGAAGAAAGCACAGGTTGAAACCCTTGAAGGCGTTTATAGAAAAACAAAGCGGCCCACTAATGCGATGGTCAGCAGCATAGTGCACGTGACAAACCTGCCCCGCAAAAGAGTTGTGAAATGGTTTGAAGACAAACGTTCGGAGGATAGCGTTCCTGACTCTCGGCAACCATATCAGCGGCCTATCCCCAATACTGTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

350

Amino Acids

39.41

Weight (kDa)

4.7

Isoelectric Point (pI)

66.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	281 - 329	2.2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	694, 951
AccB1I	GGYRCC	2 cut(s)	172, 802
AccII	CGCG	3 cut(s)	17, 162, 308
AciI	CCGC	8 cut(s)	15, 67, 148, 160, 532, 898, 949, 1024
AclI	AACGTT	1 cut(s)	982
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	715
AcuI	CTGAAG	2 cut(s)	536, 869
AcvI	CACGTG	1 cut(s)	934
AcyI	GRCGYC	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	6 cut(s)	431, 553, 788, 866, 875, 974
AhdI	GACNNNNNGTC	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	7 cut(s)	343, 352, 456, 514, 593, 598, 784
AluI	AGCT	7 cut(s)	343, 352, 456, 514, 593, 598, 784
Alw21I	GWGCWC	1 cut(s)	933
Alw44I	GTGCAC	1 cut(s)	929
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	776
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	899, 1025
ApaLI	GTGCAC	1 cut(s)	929
ApeKI	GCWGC	6 cut(s)	542, 545, 590, 668, 794, 921
ApoI	RAATTY	1 cut(s)	715
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	5 cut(s)	19, 164, 175, 268, 567
AspS9I	GGNCC	1 cut(s)	900
AsuHPI	GGTGA	3 cut(s)	72, 401, 520
AvaI	CYCGRG	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	807, 933
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BanI	GGYRCC	2 cut(s)	172, 802
BanII	GRGCYC	1 cut(s)	642
BbrPI	CACGTG	1 cut(s)	934
BbsI	GAAGAC	4 cut(s)	51, 438, 524, 981
Bbv12I	GWGCWC	1 cut(s)	933
BbvI	GCAGC	6 cut(s)	529, 532, 602, 655, 806, 933
BccI	CCATC	2 cut(s)	140, 907
BceAI	ACGGC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	657
BfmI	CTRYAG	3 cut(s)	720, 768, 777
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	2 cut(s)	694, 951
BglI	GCCNNNNNGGC	2 cut(s)	34, 170
BisI	GCNGC	9 cut(s)	148, 543, 546, 591, 669, 795, 899, 922, 1025
BlpI	GCTNAGC	2 cut(s)	348, 594
BlsI	GCNGC	9 cut(s)	149, 544, 547, 592, 670, 796, 900, 923, 1026
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	900
BmiI	GGNNCC	3 cut(s)	155, 174, 804
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	3 cut(s)	244, 253, 519
BmuI	ACTGGG	1 cut(s)	386
BpiI	GAAGAC	4 cut(s)	51, 438, 524, 981
BpmI	CTGGAG	2 cut(s)	302, 765
Bpu1102I	GCTNAGC	2 cut(s)	348, 594
BpuEI	CTTGAG	2 cut(s)	163, 278
BsaAI	YACGTR	1 cut(s)	934
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	30, 101, 138, 753
BsaWI	WCCGGW	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	381, 748
BseDI	CCNNGG	4 cut(s)	30, 101, 138, 753
BseGI	GGATG	4 cut(s)	62, 247, 253, 259
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	2 cut(s)	381, 748
BseRI	GAGGAG	9 cut(s)	248, 251, 299, 428, 431, 434, 437, 488, 497
BseSI	GKGCMC	2 cut(s)	807, 933
BseXI	GCAGC	6 cut(s)	529, 532, 602, 655, 806, 933
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	3 cut(s)	17, 162, 308
BshFI	GGCC	2 cut(s)	901, 1027
BshNI	GGYRCC	2 cut(s)	172, 802
BsiHKAI	GWGCWC	1 cut(s)	933
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	151, 506
BslFI	GGGAC	1 cut(s)	691
BsmFI	GGGAC	1 cut(s)	691
BsnI	GGCC	2 cut(s)	901, 1027
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	3 cut(s)	642, 807, 933
Bsp143I	GATC	2 cut(s)	289, 657
Bsp1720I	GCTNAGC	2 cut(s)	348, 594
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	8 cut(s)	15, 67, 148, 160, 532, 898, 949, 1024
BspANI	GGCC	2 cut(s)	901, 1027
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	3 cut(s)	17, 162, 308
BspLI	GGNNCC	3 cut(s)	155, 174, 804
BspMI	ACCTGC	2 cut(s)	694, 951
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	333
BspT107I	GGYRCC	2 cut(s)	172, 802
BsrI	ACTGG	2 cut(s)	381, 748
BssECI	CCNNGG	4 cut(s)	30, 101, 138, 753
BssMI	GATC	2 cut(s)	289, 657
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	3 cut(s)	30, 138, 753
Bst4CI	ACNGT	8 cut(s)	51, 57, 78, 389, 443, 694, 730, 1042
Bst6I	CTCTTC	5 cut(s)	191, 333, 405, 483, 489
BstACI	GRCGYC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	934
BstC8I	GCNNGC	2 cut(s)	145, 345
BstDEI	CTNAG	2 cut(s)	348, 594
BstDSI	CCRYGG	2 cut(s)	101, 753
BstEII	GGTNACC	1 cut(s)	78
BstF5I	GGATG	4 cut(s)	62, 247, 253, 259
BstFNI	CGCG	3 cut(s)	17, 162, 308
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	5 cut(s)	19, 164, 175, 268, 567
BstKTI	GATC	2 cut(s)	292, 660
BstMBI	GATC	2 cut(s)	289, 657
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 34, 170, 263, 349, 573, 637
BstPI	GGTNACC	1 cut(s)	78
BstSFI	CTRYAG	3 cut(s)	720, 768, 777
BstSLI	GKGCMC	2 cut(s)	807, 933
BstUI	CGCG	3 cut(s)	17, 162, 308
BstV1I	GCAGC	6 cut(s)	529, 532, 602, 655, 806, 933
BstV2I	GAAGAC	4 cut(s)	51, 438, 524, 981
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	901, 1027
BtgI	CCRYGG	2 cut(s)	101, 753
BtgZI	GCGATG	2 cut(s)	118, 926
BtsCI	GGATG	4 cut(s)	62, 247, 253, 259
BtsIMutI	CAGTG	2 cut(s)	374, 699
BveI	ACCTGC	2 cut(s)	694, 951
Cac8I	GCNNGC	2 cut(s)	145, 345
CaiI	CAGNNNCTG	1 cut(s)	776
CfoI	GCGC	5 cut(s)	19, 164, 175, 268, 567
Cfr13I	GGNCC	1 cut(s)	900
CseI	GACGC	2 cut(s)	297, 314
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	3 cut(s)	661, 754, 812
DdeI	CTNAG	2 cut(s)	348, 594
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	2 cut(s)	291, 659
DpnII	GATC	2 cut(s)	289, 657
DriI	GACNNNNNGTC	1 cut(s)	307
Eam1104I	CTCTTC	5 cut(s)	191, 333, 405, 483, 489
Eam1105I	GACNNNNNGTC	1 cut(s)	307
EarI	CTCTTC	5 cut(s)	191, 333, 405, 483, 489
Eco130I	CCWWGG	3 cut(s)	30, 138, 753
Eco24I	GRGCYC	1 cut(s)	642
Eco57I	CTGAAG	2 cut(s)	536, 869
Eco72I	CACGTG	1 cut(s)	934
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	78
EcoO65I	GGTNACC	1 cut(s)	78
EcoT14I	CCWWGG	3 cut(s)	30, 138, 753
EcoT38I	GRGCYC	1 cut(s)	642
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
ErhI	CCWWGG	3 cut(s)	30, 138, 753
FaeI	CATG	3 cut(s)	664, 757, 815
FaiI	YATR	8 cut(s)	459, 578, 662, 755, 813, 885, 926, 1018
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	3 cut(s)	660, 753, 811
FauI	CCCGC	2 cut(s)	74, 956
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	9 cut(s)	148, 543, 546, 591, 669, 795, 899, 922, 1025
FokI	GGATG	4 cut(s)	49, 254, 260, 266
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	9 cut(s)	148, 543, 546, 591, 669, 795, 899, 922, 1025
GlaI	GCGC	5 cut(s)	18, 163, 174, 267, 566
GluI	GCNGC	9 cut(s)	148, 543, 546, 591, 669, 795, 899, 922, 1025
GsuI	CTGGAG	2 cut(s)	302, 765
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	901, 1027
HapII	CCGG	2 cut(s)	151, 506
HgaI	GACGC	2 cut(s)	297, 314
HhaI	GCGC	5 cut(s)	19, 164, 175, 268, 567
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	664, 757, 815
Hin6I	GCGC	5 cut(s)	17, 162, 173, 266, 565
HinP1I	GCGC	5 cut(s)	17, 162, 173, 266, 565
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	115, 773, 1004
HpaII	CCGG	2 cut(s)	151, 506
HphI	GGTGA	3 cut(s)	72, 401, 520
Hpy166II	GTNNAC	3 cut(s)	129, 385, 931
Hpy188I	TCNGA	1 cut(s)	988
Hpy188III	TCNNGA	7 cut(s)	112, 180, 295, 605, 623, 635, 1001
Hpy8I	GTNNAC	3 cut(s)	129, 385, 931
Hpy99I	CGWCG	2 cut(s)	308, 323
HpyAV	CCTTC	2 cut(s)	217, 869
HpyCH4III	ACNGT	8 cut(s)	51, 57, 78, 389, 443, 694, 730, 1042
HpyCH4IV	ACGT	2 cut(s)	933, 982
HpyCH4V	TGCA	3 cut(s)	590, 794, 931
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 34, 170, 263, 349, 573, 637
HpyF3I	CTNAG	2 cut(s)	348, 594
HpySE526I	ACGT	2 cut(s)	933, 982
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	664, 757, 815
HspAI	GCGC	5 cut(s)	17, 162, 173, 266, 565
KasI	GGCGCC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	2 cut(s)	289, 657
LguI	GCTCTTC	1 cut(s)	333
Lsp1109I	GCAGC	6 cut(s)	529, 532, 602, 655, 806, 933
LweI	GCATC	3 cut(s)	244, 253, 519
MaeII	ACGT	2 cut(s)	933, 982
MaeIII	GTNAC	3 cut(s)	51, 78, 934
MalI	GATC	2 cut(s)	291, 659
MboI	GATC	2 cut(s)	289, 657
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	3 cut(s)	642, 807, 933
MluCI	AATT	2 cut(s)	626, 715
MluI	ACGCGT	1 cut(s)	306
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	109, 998
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	1 cut(s)	329
MspA1I	CMGCKG	2 cut(s)	593, 1024
MspI	CCGG	2 cut(s)	151, 506
MvnI	CGCG	3 cut(s)	17, 162, 308
MwoI	GCNNNNNNNGC	7 cut(s)	25, 34, 170, 263, 349, 573, 637
NarI	GGCGCC	1 cut(s)	173
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	2 cut(s)	289, 657
NlaIII	CATG	3 cut(s)	664, 757, 815
NlaIV	GGNNCC	3 cut(s)	155, 174, 804
NmeAIII	GCCGAG	1 cut(s)	988
NmuCI	GTSAC	2 cut(s)	78, 934
PaeR7I	CTCGAG	1 cut(s)	353
PciSI	GCTCTTC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	773
PkrI	GCNGC	9 cut(s)	149, 544, 547, 592, 670, 796, 900, 923, 1026
PleI	GAGTC	2 cut(s)	109, 998
PluTI	GGCGCC	1 cut(s)	176
PmaCI	CACGTG	1 cut(s)	934
PmlI	CACGTG	1 cut(s)	934
PpsI	GAGTC	2 cut(s)	109, 998
Ppu21I	YACGTR	1 cut(s)	934
Psp1406I	AACGTT	1 cut(s)	982
PspCI	CACGTG	1 cut(s)	934
PspEI	GGTNACC	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	155, 174, 804
PspPI	GGNCC	1 cut(s)	900
PspXI	VCTCGAGB	1 cut(s)	353
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	9 cut(s)	148, 543, 546, 591, 669, 795, 899, 922, 1025
Sau3AI	GATC	2 cut(s)	289, 657
Sau96I	GGNCC	1 cut(s)	900
SchI	GAGTC	2 cut(s)	109, 998
SduI	GDGCHC	3 cut(s)	642, 807, 933
SfaNI	GCATC	3 cut(s)	244, 253, 519
SfcI	CTRYAG	3 cut(s)	720, 768, 777
SfoI	GGCGCC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	353
SmlI	CTYRAG	3 cut(s)	178, 293, 353
SmoI	CTYRAG	3 cut(s)	178, 293, 353
Sse9I	AATT	2 cut(s)	626, 715
SsiI	CCGC	8 cut(s)	15, 67, 148, 160, 532, 898, 949, 1024
SspDI	GGCGCC	1 cut(s)	172
StyI	CCWWGG	3 cut(s)	30, 138, 753
TaaI	ACNGT	8 cut(s)	51, 57, 78, 389, 443, 694, 730, 1042
TaiI	ACGT	2 cut(s)	936, 985
TaqI	TCGA	3 cut(s)	21, 354, 624
TasI	AATT	2 cut(s)	626, 715
TauI	GCSGC	3 cut(s)	150, 901, 1027
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	381, 699
TseFI	GTSAC	2 cut(s)	78, 934
TseI	GCWGC	6 cut(s)	542, 545, 590, 668, 794, 921
Tsp45I	GTSAC	2 cut(s)	78, 934
TspDTI	ATGAA	3 cut(s)	51, 696, 800
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	381, 699
VneI	GTGCAC	1 cut(s)	929
XapI	RAATTY	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	2 cut(s)	136, 910
XhoI	CTCGAG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.