Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Forward (+)

40034540 .. 40036725

Gene Structure 2186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G478200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCTTTTGCTTCTGCGCTTAACACTCCCAAGGGGCTTCACTGTTTAACGTTGCCGTCTTCCCGCAACGAACGGCCACCCACTAATCTGATACTGCCACGTCAATTTCCGGCTCGGTTCTCGTCGACACTGGCCTTTGCCCGCCGTCGAAACCAACGCACTGAAGTGGCGTCGTCTAAGCCGAAGATAAATAAGAAAAGCTTGGCGAAAAAGGAAGTGAAGGACGAGGAGGAGGAGGATGTGGATGAGGATGCTATAGATGCACTGTTTAGGCTGCTGGAGGAAGACCTTAAAAACGACGACGAATCGTTAGACGACGAAGATTTAACAGAAGAAGAGCTTGCTAAGCTCGAACAAGAAGTAGCAGAGGCACTGGGGATTGTTGATGATGAGGAGGACGAGGATGAGGACGAGGAAGATGATGATGATGATGACGAGGACGACAAAGATGATGATGATGACGTTGTTATTGAGATCGATGCTCAAGAAGAAGAAGTAGATGATGATGACGATGATGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAAGCCCTGTGAAGCTTAAGACTTGGCAGCTTCGGAGATTGGCTGCTGCTTTAAAAGTTGGTCGCCGCAAAACCAGCATAAAAATTCTTGCAGCTGAGCTTTGTCTCGACAGGCCAGTTGTTCTCGAATTGCTTCGCAACCCCCCTCCAAGTCTTTTGATGATGTGTGCTGCTTTACCTGATGAACCAGCTCCAACAATATCTGTGTCCCAAACGATGCCTGTAGAAACTGTTGTGGAAGCAACTGTAGAAACTGTGGTGGAAACAACTACAGAGTCTTCGGAGGTTGAAACTACAGTGAACAAACCTATTCATGTTATGCAACAAAAGTTTTCTGCTCAAAAAAGACTGAAGAAAGCGCATGTTGAAACCCTTGAAAGTGTTTATAGAAAAACAAAGCGGCCCACTAATGCAATGATCAGCAGCATAGTGCATGTGACAAACCTGCCCCGCAAAAGAGTTGTGAAATGGTTTGAAGACAAACGTTCTGAGGATGGTGTTACTGACTCTCGACTTCCATATCGACGGCCTGCCCCTAATACTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

364

Amino Acids

41.22

Weight (kDa)

4.41

Isoelectric Point (pI)

69.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	996
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	5 cut(s)	64, 142, 610, 943, 994
AclI	AACGTT	2 cut(s)	50, 1027
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	183, 914
AcyI	GRCGYC	1 cut(s)	170
AflII	CTTAAG	1 cut(s)	560
AgsI	TTSAA	4 cut(s)	833, 911, 920, 1019
AjiI	CACGTC	1 cut(s)	101
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	8 cut(s)	201, 340, 349, 559, 574, 638, 643, 734
AluI	AGCT	8 cut(s)	201, 340, 349, 559, 574, 638, 643, 734
Alw26I	GTCTC	1 cut(s)	653
AoxI	GGCC	5 cut(s)	74, 132, 656, 944, 1070
ApeKI	GCWGC	7 cut(s)	274, 571, 587, 590, 635, 713, 966
ApoI	RAATTY	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	2 cut(s)	19, 904
AspS9I	GGNCC	1 cut(s)	945
BbsI	GAAGAC	4 cut(s)	51, 291, 813, 1026
BbvI	GCAGC	7 cut(s)	261, 574, 577, 583, 647, 700, 978
BccI	CCATC	1 cut(s)	1031
BceAI	ACGGC	4 cut(s)	40, 89, 129, 1085
BclI	TGATCA	1 cut(s)	960
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	1090
BfmI	CTRYAG	5 cut(s)	255, 765, 789, 813, 837
BfrI	CTTAAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	996
BisI	GCNGC	9 cut(s)	275, 572, 588, 591, 610, 636, 714, 944, 967
BlpI	GCTNAGC	2 cut(s)	345, 639
BlsI	GCNGC	9 cut(s)	276, 573, 589, 592, 611, 637, 715, 945, 968
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	945
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	4 cut(s)	241, 250, 469, 750
BmuI	ACTGGG	1 cut(s)	383
BpiI	GAAGAC	4 cut(s)	51, 291, 813, 1026
BpmI	CTGGAG	1 cut(s)	299
Bpu1102I	GCTNAGC	2 cut(s)	345, 639
BpuEI	CTTGAG	1 cut(s)	468
Bsa29I	ATCGAT	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	30
Bse1I	ACTGG	3 cut(s)	135, 378, 659
Bse3DI	GCAATG	1 cut(s)	963
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	5 cut(s)	244, 250, 256, 409, 1042
BseMI	GCAATG	1 cut(s)	963
BseMII	CTCAG	2 cut(s)	630, 1023
BseNI	ACTGG	3 cut(s)	135, 378, 659
BseRI	GAGGAG	9 cut(s)	242, 245, 248, 407, 536, 539, 542, 545, 548
BseXI	GCAGC	7 cut(s)	261, 574, 577, 583, 647, 700, 978
BshFI	GGCC	5 cut(s)	76, 134, 658, 946, 1072
BshVI	ATCGAT	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	736
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	5 cut(s)	76, 134, 658, 946, 1072
Bsp143I	GATC	2 cut(s)	474, 960
Bsp1720I	GCTNAGC	2 cut(s)	345, 639
BspACI	CCGC	5 cut(s)	64, 142, 610, 943, 994
BspANI	GGCC	5 cut(s)	76, 134, 658, 946, 1072
BspCNI	CTCAG	2 cut(s)	631, 1024
BspDI	ATCGAT	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	996
BspQI	GCTCTTC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	963
BsrI	ACTGG	3 cut(s)	135, 378, 659
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	474, 960
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	6 cut(s)	44, 267, 775, 790, 799, 841
Bst6I	CTCTTC	3 cut(s)	330, 513, 534
BstACI	GRCGYC	1 cut(s)	170
BstAFI	CTTAAG	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	142, 342, 1074
BstDEI	CTNAG	4 cut(s)	177, 345, 639, 1032
BstF5I	GGATG	5 cut(s)	244, 250, 256, 409, 1042
BstHHI	GCGC	2 cut(s)	19, 904
BstKTI	GATC	2 cut(s)	477, 963
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	2 cut(s)	474, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 346, 618
BstNSI	RCATGY	2 cut(s)	908, 980
BstSFI	CTRYAG	5 cut(s)	255, 765, 789, 813, 837
BstV1I	GCAGC	7 cut(s)	261, 574, 577, 583, 647, 700, 978
BstV2I	GAAGAC	4 cut(s)	51, 291, 813, 1026
Bsu15I	ATCGAT	1 cut(s)	477
BsuRI	GGCC	5 cut(s)	76, 134, 658, 946, 1072
BsuTUI	ATCGAT	1 cut(s)	477
BtrI	CACGTC	1 cut(s)	101
BtsCI	GGATG	5 cut(s)	244, 250, 256, 409, 1042
BtsIMutI	CAGTG	6 cut(s)	40, 128, 159, 263, 371, 846
BveI	ACCTGC	1 cut(s)	996
Cac8I	GCNNGC	3 cut(s)	142, 342, 1074
CfoI	GCGC	2 cut(s)	19, 904
Cfr13I	GGNCC	1 cut(s)	945
ClaI	ATCGAT	1 cut(s)	477
CseI	GACGC	1 cut(s)	159
CviAII	CATG	3 cut(s)	857, 905, 977
DdeI	CTNAG	4 cut(s)	177, 345, 639, 1032
DpnI	GATC	2 cut(s)	476, 962
DpnII	GATC	2 cut(s)	474, 960
DraI	TTTAAA	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	3 cut(s)	330, 513, 534
EarI	CTCTTC	3 cut(s)	330, 513, 534
Eco130I	CCWWGG	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	183, 914
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	860, 908, 980
FaiI	YATR	9 cut(s)	257, 623, 858, 863, 906, 930, 971, 978, 1063
FalI	AAGNNNNNCTT	4 cut(s)	185, 217, 324, 356
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	3 cut(s)	856, 904, 976
FauI	CCCGC	3 cut(s)	71, 149, 1001
FbaI	TGATCA	1 cut(s)	960
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	9 cut(s)	275, 572, 588, 591, 610, 636, 714, 944, 967
FokI	GGATG	5 cut(s)	251, 257, 263, 416, 1049
Fsp4HI	GCNGC	9 cut(s)	275, 572, 588, 591, 610, 636, 714, 944, 967
FspBI	CTAG	1 cut(s)	1090
GlaI	GCGC	2 cut(s)	18, 903
GluI	GCNGC	9 cut(s)	275, 572, 588, 591, 610, 636, 714, 944, 967
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	5 cut(s)	76, 134, 658, 946, 1072
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	2 cut(s)	19, 904
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	860, 908, 980
Hin6I	GCGC	2 cut(s)	17, 902
HinP1I	GCGC	2 cut(s)	17, 902
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HindIII	AAGCTT	2 cut(s)	199, 557
HinfI	GANTC	3 cut(s)	305, 818, 1049
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	126, 844
Hpy188I	TCNGA	4 cut(s)	90, 579, 826, 1033
Hpy188III	TCNNGA	4 cut(s)	485, 650, 668, 1053
Hpy8I	GTNNAC	2 cut(s)	126, 844
Hpy99I	CGWCG	7 cut(s)	127, 150, 175, 302, 305, 320, 1071
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	6 cut(s)	44, 267, 775, 790, 799, 841
HpyCH4IV	ACGT	4 cut(s)	50, 100, 462, 1027
HpyCH4V	TGCA	5 cut(s)	263, 635, 865, 956, 976
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 346, 618
HpyF3I	CTNAG	4 cut(s)	177, 345, 639, 1032
HpySE526I	ACGT	4 cut(s)	50, 100, 462, 1027
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	860, 908, 980
HspAI	GCGC	2 cut(s)	17, 902
Ksp22I	TGATCA	1 cut(s)	960
Kzo9I	GATC	2 cut(s)	474, 960
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	7 cut(s)	261, 574, 577, 583, 647, 700, 978
LweI	GCATC	4 cut(s)	241, 250, 469, 750
MaeI	CTAG	1 cut(s)	1090
MaeII	ACGT	4 cut(s)	50, 100, 462, 1027
MaeIII	GTNAC	2 cut(s)	979, 1042
MalI	GATC	2 cut(s)	476, 962
MboI	GATC	2 cut(s)	474, 960
MluCI	AATT	3 cut(s)	104, 627, 671
MlyI	GAGTC	2 cut(s)	827, 1043
MmeI	TCCRAC	1 cut(s)	761
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	6 cut(s)	21, 47, 291, 326, 561, 596
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	638
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	260, 346, 618
NdeII	GATC	2 cut(s)	474, 960
NlaIII	CATG	3 cut(s)	860, 908, 980
NmuCI	GTSAC	1 cut(s)	979
NspI	RCATGY	2 cut(s)	908, 980
OliI	CACNNNNGTG	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	9 cut(s)	276, 573, 589, 592, 611, 637, 715, 945, 968
PleI	GAGTC	2 cut(s)	826, 1043
PpsI	GAGTC	2 cut(s)	826, 1043
Psp1406I	AACGTT	2 cut(s)	50, 1027
PspPI	GGNCC	1 cut(s)	945
PvuII	CAGCTG	1 cut(s)	638
RseI	CAYNNNNRTG	1 cut(s)	164
SalI	GTCGAC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	6 cut(s)	21, 47, 291, 326, 561, 596
SatI	GCNGC	9 cut(s)	275, 572, 588, 591, 610, 636, 714, 944, 967
Sau3AI	GATC	2 cut(s)	474, 960
Sau96I	GGNCC	1 cut(s)	945
SchI	GAGTC	2 cut(s)	827, 1043
SfaNI	GCATC	4 cut(s)	241, 250, 469, 750
SfcI	CTRYAG	5 cut(s)	255, 765, 789, 813, 837
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	483, 560
SmoI	CTYRAG	2 cut(s)	483, 560
Sse9I	AATT	3 cut(s)	104, 627, 671
SsiI	CCGC	5 cut(s)	64, 142, 610, 943, 994
SspMI	CTAG	1 cut(s)	1090
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	6 cut(s)	44, 267, 775, 790, 799, 841
TaiI	ACGT	4 cut(s)	53, 103, 465, 1030
TaqI	TCGA	8 cut(s)	125, 148, 351, 477, 651, 669, 1054, 1066
TasI	AATT	3 cut(s)	104, 627, 671
TauI	GCSGC	2 cut(s)	612, 946
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	6 cut(s)	21, 47, 291, 326, 561, 596
Tru9I	TTAA	6 cut(s)	21, 47, 291, 326, 561, 596
TscAI	CASTG	6 cut(s)	47, 135, 166, 270, 378, 846
TseFI	GTSAC	1 cut(s)	979
TseI	GCWGC	7 cut(s)	274, 571, 587, 590, 635, 713, 966
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	3 cut(s)	531, 741, 845
TspRI	CASTG	6 cut(s)	47, 135, 166, 270, 378, 846
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	2 cut(s)	908, 980
XmiI	GTMKAC	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.