Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Reverse (-)

58310416 .. 58312384

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG391200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTTTCGCTTCGGCGCTCAACGCTCCTAACGGCCTTCATCGTCTACCGTCTTCCCGCCACGAAATAACCCGAACCGGACCCGCCAGTCTGGTCCTGCCACGTCACCTTCCGGCCCGCTTCTCATCCACGCTCGCCTTCGCCCGCCGTAAGAACCACCGCGCCGCGGTGACGTCAGCTCAGCCGAAGTTAAAGAAGAAAAGCGCGGCGAAGAATGAGGAGGATGAAGTGGACGGCGATGCTATAGACGCTTTGTTTTCGCTGCTGGAGGAAGACCTCAGAAACGACGGCGTGTCGTTTGATGATGACGGCGAAGACGACGAGATAAGCGAAGAGGACCTGGCTAGGCTTGAAGAGGAACTGGCGGAGGCGTTTGGTGCGGTTGATGAGGATGAAGATGAAGAGGAGGATGACGAAGACGGCGATGTTGATGTTGTTCAGAGCGATGCGACTGAAGAAGAAGATGAGGAGGAGGAGGACGACGACGATGAAGTTGAAGTAGCTGTGAAGCTTAAGACTTGGCAATTTCGGAGATTGGCTTCAGCTTTAAAAGTCGGTCGCCGCAAAACCAGTATAAAAGCCCTTGCAGCTGAGCTTTGTCTTGACAGGGCTCTTGTTCTTCAAATGCTTCGTGATCCGCCTCCAAATCTTTTGATGCTCAGTGCTGCTCTACCTGATGTACCTGCTCCTAAAAAATCTGTGCCTGAACCAAAGCCTGTAGAAACTGTTGTGGAAACCACTGTGGAAACTCTTGTGGAACCTACTACAGATGCTGCAGCGGTCGAAACTGCGGTGAAGGTGCCGGTTCATGTCCGGCAACAAAAGTTTTCTGGTCAGAAGAGACTGAAGAAAGTGCATCTTGACACCCTTGAAAGAGTTTATAGAAGAACAAAGCGCCCAACAAATGCAATTGTCAGCAGCATAGTGCATGTGACAAACCTGCCGCGCAAGAGAATTGTGAAATGGTTTGAAGACAAACGTTCTGAAGAGGGGGTTCCTGACTCTCGGCACCCATATCAACCGTCTGCTCCTACTACTGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

348

Amino Acids

38.76

Weight (kDa)

4.83

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
AatII	GACGTC	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	691, 948
AccB1I	GGYRCC	2 cut(s)	799, 1008
AccI	GTMKAC	1 cut(s)	46
AccII	CGCG	4 cut(s)	162, 167, 206, 946
AclI	AACGTT	1 cut(s)	979
AclWI	GGATC	1 cut(s)	629
AcuI	CTGAAG	4 cut(s)	474, 525, 866, 1005
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	681
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	5 cut(s)	353, 497, 623, 872, 971
AhdI	GACNNNNNGTC	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	6 cut(s)	179, 503, 511, 545, 590, 595
AluI	AGCT	6 cut(s)	179, 503, 511, 545, 590, 595
Alw26I	GTCTC	1 cut(s)	835
AlwI	GGATC	1 cut(s)	629
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	34, 114
ApeKI	GCWGC	6 cut(s)	262, 587, 665, 773, 776, 918
AspLEI	GCGC	5 cut(s)	19, 164, 206, 897, 948
AspS9I	GGNCC	4 cut(s)	80, 94, 115, 337
AsuHPI	GGTGA	3 cut(s)	98, 181, 805
AvaII	GGWCC	3 cut(s)	80, 94, 337
BanI	GGYRCC	2 cut(s)	799, 1008
BanII	GRGCYC	1 cut(s)	613
BbsI	GAAGAC	5 cut(s)	45, 279, 321, 423, 978
BbvI	GCAGC	6 cut(s)	249, 599, 652, 760, 788, 930
BceAI	ACGGC	6 cut(s)	49, 132, 250, 304, 325, 436
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	835
BfaI	CTAG	2 cut(s)	345, 1045
BfmI	CTRYAG	4 cut(s)	243, 717, 765, 774
BfoI	RGCGCY	2 cut(s)	20, 898
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	2 cut(s)	691, 948
BlpI	GCTNAGC	2 cut(s)	180, 591
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	3 cut(s)	80, 94, 337
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	80, 94, 115, 337
BmiI	GGNNCC	5 cut(s)	82, 759, 801, 996, 1010
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	5 cut(s)	229, 436, 645, 760, 865
BpiI	GAAGAC	5 cut(s)	45, 279, 321, 423, 978
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	2 cut(s)	180, 591
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	3 cut(s)	87, 366, 570
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	4 cut(s)	125, 229, 397, 415
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	194, 292, 582, 673
BseNI	ACTGG	3 cut(s)	87, 366, 570
BseRI	GAGGAG	5 cut(s)	233, 419, 482, 485, 488
BseXI	GCAGC	6 cut(s)	249, 599, 652, 760, 788, 930
Bsh1236I	CGCG	4 cut(s)	162, 167, 206, 946
Bsh1285I	CGRYCG	2 cut(s)	559, 783
BshFI	GGCC	2 cut(s)	36, 116
BshNI	GGYRCC	2 cut(s)	799, 1008
BsiEI	CGRYCG	2 cut(s)	559, 783
BsiSI	CCGG	4 cut(s)	78, 113, 803, 814
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	835
BsnI	GGCC	2 cut(s)	36, 116
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	1 cut(s)	634
Bsp1720I	GCTNAGC	2 cut(s)	180, 591
BspANI	GGCC	2 cut(s)	36, 116
BspCNI	CTCAG	4 cut(s)	193, 291, 583, 672
BspFNI	CGCG	4 cut(s)	162, 167, 206, 946
BspLI	GGNNCC	5 cut(s)	82, 759, 801, 996, 1010
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	2 cut(s)	691, 948
BspPI	GGATC	1 cut(s)	629
BspT107I	GGYRCC	2 cut(s)	799, 1008
BspTI	CTTAAG	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	3 cut(s)	87, 366, 570
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	634
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	5 cut(s)	51, 727, 742, 1023, 1039
Bst6I	CTCTTC	5 cut(s)	327, 348, 396, 833, 981
BstACI	GRCGYC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	118, 135, 145
BstDEI	CTNAG	4 cut(s)	180, 278, 591, 659
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	4 cut(s)	125, 229, 397, 415
BstFNI	CGCG	4 cut(s)	162, 167, 206, 946
BstH2I	RGCGCY	2 cut(s)	20, 898
BstHHI	GCGC	5 cut(s)	19, 164, 206, 897, 948
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	1 cut(s)	634
BstMCI	CGRYCG	2 cut(s)	559, 783
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 587
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	932
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	4 cut(s)	243, 717, 765, 774
BstUI	CGCG	4 cut(s)	162, 167, 206, 946
BstV1I	GCAGC	6 cut(s)	249, 599, 652, 760, 788, 930
BstV2I	GAAGAC	5 cut(s)	45, 279, 321, 423, 978
BsuRI	GGCC	2 cut(s)	36, 116
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	3 cut(s)	252, 438, 459
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	125, 229, 397, 415
BtsIMutI	CAGTG	2 cut(s)	667, 738
BveI	ACCTGC	2 cut(s)	691, 948
Cac8I	GCNNGC	3 cut(s)	118, 135, 145
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	5 cut(s)	19, 164, 206, 897, 948
Cfr10I	RCCGGY	1 cut(s)	802
Cfr13I	GGNCC	4 cut(s)	80, 94, 115, 337
Cfr42I	CCGCGG	1 cut(s)	168
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	680
CviAII	CATG	2 cut(s)	809, 929
CviQI	GTAC	1 cut(s)	680
DdeI	CTNAG	4 cut(s)	180, 278, 591, 659
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
DraI	TTTAAA	1 cut(s)	549
DrdI	GACNNNNNNGTC	1 cut(s)	87
DriI	GACNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	87
Eam1104I	CTCTTC	5 cut(s)	327, 348, 396, 833, 981
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	5 cut(s)	327, 348, 396, 833, 981
EciI	GGCGGA	2 cut(s)	380, 627
Eco24I	GRGCYC	1 cut(s)	613
Eco47I	GGWCC	3 cut(s)	80, 94, 337
Eco57I	CTGAAG	4 cut(s)	474, 525, 866, 1005
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	613
FaeI	CATG	2 cut(s)	812, 932
FaiI	YATR	7 cut(s)	245, 575, 810, 882, 923, 930, 1015
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FatI	CATG	2 cut(s)	808, 928
FauI	CCCGC	4 cut(s)	65, 91, 125, 152
FblI	GTMKAC	1 cut(s)	46
FokI	GGATG	4 cut(s)	112, 236, 404, 422
FriOI	GRGCYC	1 cut(s)	613
FspBI	CTAG	2 cut(s)	345, 1045
GlaI	GCGC	5 cut(s)	18, 163, 205, 896, 947
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	20, 898
HaeIII	GGCC	2 cut(s)	36, 116
HapII	CCGG	4 cut(s)	78, 113, 803, 814
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	5 cut(s)	19, 164, 206, 897, 948
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	812, 932
Hin6I	GCGC	5 cut(s)	17, 162, 204, 895, 946
HinP1I	GCGC	5 cut(s)	17, 162, 204, 895, 946
HincII	GTYRAC	1 cut(s)	1042
HindII	GTYRAC	1 cut(s)	1042
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	1001
HpaII	CCGG	4 cut(s)	78, 113, 803, 814
HphI	GGTGA	3 cut(s)	98, 181, 805
Hpy166II	GTNNAC	3 cut(s)	47, 232, 1042
Hpy188I	TCNGA	5 cut(s)	281, 441, 531, 837, 985
Hpy188III	TCNNGA	4 cut(s)	602, 632, 860, 998
Hpy8I	GTNNAC	3 cut(s)	47, 232, 1042
Hpy99I	CGWCG	4 cut(s)	290, 323, 485, 488
HpyAV	CCTTC	4 cut(s)	47, 119, 148, 790
HpyCH4III	ACNGT	5 cut(s)	51, 727, 742, 1023, 1039
HpyCH4IV	ACGT	3 cut(s)	103, 173, 979
HpyCH4V	TGCA	5 cut(s)	587, 776, 856, 908, 928
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 587
HpyF3I	CTNAG	4 cut(s)	180, 278, 591, 659
HpySE526I	ACGT	3 cut(s)	103, 173, 979
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	812, 932
HspAI	GCGC	5 cut(s)	17, 162, 204, 895, 946
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	3 cut(s)	31, 691, 1033
Lsp1109I	GCAGC	6 cut(s)	249, 599, 652, 760, 788, 930
LweI	GCATC	5 cut(s)	229, 436, 645, 760, 865
MaeI	CTAG	2 cut(s)	345, 1045
MaeII	ACGT	3 cut(s)	103, 173, 979
MaeIII	GTNAC	3 cut(s)	104, 169, 931
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MfeI	CAATTG	1 cut(s)	909
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	3 cut(s)	524, 909, 954
MlyI	GAGTC	1 cut(s)	995
MseI	TTAA	3 cut(s)	191, 513, 548
MspA1I	CMGCKG	3 cut(s)	167, 590, 779
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	4 cut(s)	78, 113, 803, 814
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	4 cut(s)	162, 167, 206, 946
MwoI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 587
NdeII	GATC	1 cut(s)	634
NlaIII	CATG	2 cut(s)	812, 932
NlaIV	GGNNCC	5 cut(s)	82, 759, 801, 996, 1010
NmeAIII	GCCGAG	1 cut(s)	985
NmuCI	GTSAC	3 cut(s)	104, 169, 931
NspI	RCATGY	1 cut(s)	932
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 327, 420
PleI	GAGTC	1 cut(s)	995
PpsI	GAGTC	1 cut(s)	995
PpuMI	RGGWCCY	1 cut(s)	337
Psp1406I	AACGTT	1 cut(s)	979
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	5 cut(s)	82, 759, 801, 996, 1010
PspPI	GGNCC	4 cut(s)	80, 94, 115, 337
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	773
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	681
RsaNI	GTAC	1 cut(s)	680
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	191, 513, 548
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	4 cut(s)	80, 94, 115, 337
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	5 cut(s)	229, 436, 645, 760, 865
SfcI	CTRYAG	4 cut(s)	243, 717, 765, 774
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	80, 94, 337
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	3 cut(s)	524, 909, 954
SspMI	CTAG	2 cut(s)	345, 1045
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	5 cut(s)	51, 727, 742, 1023, 1039
TaiI	ACGT	3 cut(s)	106, 176, 982
TaqI	TCGA	1 cut(s)	783
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	524, 909, 954
TauI	GCSGC	4 cut(s)	167, 209, 564, 946
Tru1I	TTAA	3 cut(s)	191, 513, 548
Tru9I	TTAA	3 cut(s)	191, 513, 548
TscAI	CASTG	2 cut(s)	667, 745
TseFI	GTSAC	3 cut(s)	104, 169, 931
TseI	GCWGC	6 cut(s)	262, 587, 665, 773, 776, 918
Tsp45I	GTSAC	3 cut(s)	104, 169, 931
TspDTI	ATGAA	6 cut(s)	29, 240, 408, 414, 504, 797
TspRI	CASTG	2 cut(s)	667, 745
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	3 cut(s)	80, 94, 337
XceI	RCATGY	1 cut(s)	932
XmiI	GTMKAC	1 cut(s)	46
XspI	CTAG	2 cut(s)	345, 1045
ZraI	GACGTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.