Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Reverse (-)

58861475 .. 58863038

Gene Structure 1564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG390200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTTTCGCTTCAGCGCTCAACGCTCCTAACGGCCTTCATCGTCTGCCGTCTTCCCGCCACCAAACAACCCGAACCGGACCGGCCAGTCTGGTCCTGCCACGTCACCTTCCGGCTCGCTTCTCGTCCACGCTCGCCTTCGCCCGCCGTAAGAACCACCGCGCCGCGGTGACGTCAGCTCAGCCGAAGTTAAAGAAGAAAAGCGCGGCGGAGAATGAGGAGGATGAAGTGGACGGCGATGCTATAGACGCTTTGTTTTCGCTGCTGGAGGAAGACCTCAGAAACGACGGCGTGTCGTTTGATGATGACGGCGAAGACGACGAGATAAGTGAAGAGGACCTGGCTAGGCTTGAAGAGGAACTGGCGGAGGCGTTTGGTGCGGTTGATGAGGATGAAGATGAAGACGAGGAAGAAGATGAGGAGGATGACGAAGACGGCGACGGCGATGTTAATGCGACTGAAGAAGATGAGGAGGACGACGATGAGGTTGAAGTTGCTGTGAAGCTTAAGACTTGGCAATTTCGGAGATTGGCTTCAGCTTTAAAAGTCGGTCGCCGCAAAACCAGTATAAAAGCCCTTGCAGCTGAGCTTTGTCTTGACAGAGCTCTTGTTCTTCAAATGCTTCGTGATCCGCCTCCAAATCTTTTGATGCTCAGTGCTGCCCTACCTGATGTACCTGCTCCTAAAAAATCTGTGCCTGAACCAAAGCCTGTAGAAACTGTTGTGGAAACCACTGTGGAAACTGTTGTGGAACCTACTACAGATGCTGCGGCGGTCGAAACTGCGGTGAAGGTGCCGGTTCATGTCCGGCAACAAAAGTTTTCTGGTCAGAAGAGACTGAAGAAAGTGCAGCTTGACACCCTTGAAAGAGTTTATAGAAGAACAAAGCGCCCAACAAATGCAATTGTCAGCAGCATAGTGCATGTGACAAACCTGCCGCGCAAAAGAATTGTGAAATGGTTTGAAGACAAACGTTCTGAAGAGGGGGTTCCTGACTCTCGGCGTCCATATCAACCGTCTGCTCCTACTACTGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

346

Amino Acids

38.5

Weight (kDa)

4.77

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	279 - 326	8.3e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
AatII	GACGTC	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	685, 942
AccB1I	GGYRCC	1 cut(s)	793
AccII	CGCG	4 cut(s)	162, 167, 206, 940
AclI	AACGTT	1 cut(s)	973
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	1 cut(s)	84
AcuI	CTGAAG	4 cut(s)	480, 519, 860, 999
AcyI	GRCGYC	2 cut(s)	173, 1003
AfaI	GTAC	1 cut(s)	675
AfeI	AGCGCT	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	5 cut(s)	353, 491, 617, 866, 965
AhdI	GACNNNNNGTC	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	7 cut(s)	179, 505, 539, 584, 589, 605, 853
AluI	AGCT	7 cut(s)	179, 505, 539, 584, 589, 605, 853
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	767
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	2 cut(s)	34, 84
ApeKI	GCWGC	6 cut(s)	262, 581, 659, 767, 850, 912
AspLEI	GCGC	5 cut(s)	19, 164, 206, 891, 942
AspS9I	GGNCC	3 cut(s)	80, 94, 337
AsuHPI	GGTGA	3 cut(s)	98, 181, 799
AvaII	GGWCC	3 cut(s)	80, 94, 337
BanI	GGYRCC	1 cut(s)	793
BanII	GRGCYC	1 cut(s)	607
BbsI	GAAGAC	6 cut(s)	45, 279, 321, 408, 438, 972
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	6 cut(s)	249, 593, 646, 754, 862, 924
BceAI	ACGGC	8 cut(s)	34, 49, 132, 250, 304, 325, 451, 457
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	2 cut(s)	345, 1039
BfmI	CTRYAG	3 cut(s)	243, 711, 759
BfoI	RGCGCY	2 cut(s)	20, 892
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	2 cut(s)	685, 942
BlpI	GCTNAGC	2 cut(s)	180, 585
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	3 cut(s)	80, 94, 337
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	3 cut(s)	80, 94, 337
BmiI	GGNNCC	3 cut(s)	753, 795, 990
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	3 cut(s)	229, 639, 754
BpiI	GAAGAC	6 cut(s)	45, 279, 321, 408, 438, 972
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	2 cut(s)	180, 585
BsaHI	GRCGYC	2 cut(s)	173, 1003
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	2 cut(s)	82, 796
Bse1I	ACTGG	3 cut(s)	87, 366, 564
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	229, 397, 430
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	194, 292, 576, 667
BseNI	ACTGG	3 cut(s)	87, 366, 564
BseRI	GAGGAG	3 cut(s)	233, 434, 485
BseXI	GCAGC	6 cut(s)	249, 593, 646, 754, 862, 924
BsgI	GTGCAG	1 cut(s)	869
Bsh1236I	CGCG	4 cut(s)	162, 167, 206, 940
Bsh1285I	CGRYCG	2 cut(s)	553, 777
BshFI	GGCC	2 cut(s)	36, 86
BshNI	GGYRCC	1 cut(s)	793
BsiEI	CGRYCG	2 cut(s)	553, 777
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	5 cut(s)	78, 83, 113, 797, 808
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	829
BsnI	GGCC	2 cut(s)	36, 86
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	1 cut(s)	628
Bsp1720I	GCTNAGC	2 cut(s)	180, 585
BspANI	GGCC	2 cut(s)	36, 86
BspCNI	CTCAG	4 cut(s)	193, 291, 577, 666
BspFNI	CGCG	4 cut(s)	162, 167, 206, 940
BspLI	GGNNCC	3 cut(s)	753, 795, 990
BspMI	ACCTGC	2 cut(s)	685, 942
BspPI	GGATC	1 cut(s)	623
BspT107I	GGYRCC	1 cut(s)	793
BspTI	CTTAAG	1 cut(s)	506
BsrFI	RCCGGY	2 cut(s)	82, 796
BsrI	ACTGG	3 cut(s)	87, 366, 564
BssAI	RCCGGY	2 cut(s)	82, 796
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	628
BssNI	GRCGYC	2 cut(s)	173, 1003
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	5 cut(s)	721, 736, 745, 1017, 1033
Bst6I	CTCTTC	4 cut(s)	327, 348, 827, 975
BstACI	GRCGYC	2 cut(s)	173, 1003
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	118, 135, 145
BstDEI	CTNAG	4 cut(s)	180, 278, 585, 653
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	229, 397, 430
BstFNI	CGCG	4 cut(s)	162, 167, 206, 940
BstH2I	RGCGCY	2 cut(s)	20, 892
BstHHI	GCGC	5 cut(s)	19, 164, 206, 891, 942
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	1 cut(s)	628
BstMCI	CGRYCG	2 cut(s)	553, 777
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 581
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	926
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	3 cut(s)	243, 711, 759
BstUI	CGCG	4 cut(s)	162, 167, 206, 940
BstV1I	GCAGC	6 cut(s)	249, 593, 646, 754, 862, 924
BstV2I	GAAGAC	6 cut(s)	45, 279, 321, 408, 438, 972
BsuRI	GGCC	2 cut(s)	36, 86
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	2 cut(s)	252, 459
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	229, 397, 430
BtsIMutI	CAGTG	2 cut(s)	661, 732
BveI	ACCTGC	2 cut(s)	685, 942
Cac8I	GCNNGC	3 cut(s)	118, 135, 145
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	5 cut(s)	19, 164, 206, 891, 942
Cfr10I	RCCGGY	2 cut(s)	82, 796
Cfr13I	GGNCC	3 cut(s)	80, 94, 337
Cfr42I	CCGCGG	1 cut(s)	168
CpoI	CGGWCCG	1 cut(s)	80
CseI	GACGC	2 cut(s)	257, 992
Csp6I	GTAC	1 cut(s)	674
CspI	CGGWCCG	1 cut(s)	80
CviAII	CATG	2 cut(s)	803, 923
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	4 cut(s)	180, 278, 585, 653
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
DraI	TTTAAA	1 cut(s)	543
DrdI	GACNNNNNNGTC	1 cut(s)	87
DriI	GACNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	4 cut(s)	327, 348, 827, 975
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	4 cut(s)	327, 348, 827, 975
EciI	GGCGGA	3 cut(s)	224, 380, 621
Ecl136II	GAGCTC	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	3 cut(s)	80, 94, 337
Eco47III	AGCGCT	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	4 cut(s)	480, 519, 860, 999
EcoICRI	GAGCTC	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	607
FaeI	CATG	2 cut(s)	806, 926
FaiI	YATR	7 cut(s)	245, 569, 804, 876, 917, 924, 1009
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FatI	CATG	2 cut(s)	802, 922
FauI	CCCGC	2 cut(s)	65, 152
FokI	GGATG	3 cut(s)	236, 404, 437
FriOI	GRGCYC	1 cut(s)	607
FspBI	CTAG	2 cut(s)	345, 1039
GlaI	GCGC	5 cut(s)	18, 163, 205, 890, 941
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	20, 892
HaeIII	GGCC	2 cut(s)	36, 86
HapII	CCGG	5 cut(s)	78, 83, 113, 797, 808
HgaI	GACGC	2 cut(s)	257, 992
HhaI	GCGC	5 cut(s)	19, 164, 206, 891, 942
Hin1I	GRCGYC	2 cut(s)	173, 1003
Hin1II	CATG	2 cut(s)	806, 926
Hin6I	GCGC	5 cut(s)	17, 162, 204, 889, 940
HinP1I	GCGC	5 cut(s)	17, 162, 204, 889, 940
HincII	GTYRAC	1 cut(s)	1036
HindII	GTYRAC	1 cut(s)	1036
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	995
HpaII	CCGG	5 cut(s)	78, 83, 113, 797, 808
HphI	GGTGA	3 cut(s)	98, 181, 799
Hpy166II	GTNNAC	3 cut(s)	129, 232, 1036
Hpy188I	TCNGA	4 cut(s)	281, 525, 831, 979
Hpy188III	TCNNGA	3 cut(s)	596, 626, 992
Hpy8I	GTNNAC	3 cut(s)	129, 232, 1036
Hpy99I	CGWCG	4 cut(s)	290, 323, 443, 482
HpyAV	CCTTC	4 cut(s)	47, 119, 148, 784
HpyCH4III	ACNGT	5 cut(s)	721, 736, 745, 1017, 1033
HpyCH4IV	ACGT	3 cut(s)	103, 173, 973
HpyCH4V	TGCA	4 cut(s)	581, 850, 902, 922
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 581
HpyF3I	CTNAG	4 cut(s)	180, 278, 585, 653
HpySE526I	ACGT	3 cut(s)	103, 173, 973
Hsp92I	GRCGYC	2 cut(s)	173, 1003
Hsp92II	CATG	2 cut(s)	806, 926
HspAI	GCGC	5 cut(s)	17, 162, 204, 889, 940
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	3 cut(s)	31, 685, 1027
Lsp1109I	GCAGC	6 cut(s)	249, 593, 646, 754, 862, 924
LweI	GCATC	3 cut(s)	229, 639, 754
MaeI	CTAG	2 cut(s)	345, 1039
MaeII	ACGT	3 cut(s)	103, 173, 973
MaeIII	GTNAC	3 cut(s)	104, 169, 925
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MfeI	CAATTG	1 cut(s)	903
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	3 cut(s)	518, 903, 948
MlyI	GAGTC	1 cut(s)	989
MseI	TTAA	4 cut(s)	191, 450, 507, 542
MspA1I	CMGCKG	2 cut(s)	167, 584
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	5 cut(s)	78, 83, 113, 797, 808
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	903
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	4 cut(s)	162, 167, 206, 940
MwoI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 581
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	2 cut(s)	806, 926
NlaIV	GGNNCC	3 cut(s)	753, 795, 990
NmeAIII	GCCGAG	1 cut(s)	979
NmuCI	GTSAC	3 cut(s)	104, 169, 925
NspI	RCATGY	1 cut(s)	926
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 435, 441
PleI	GAGTC	1 cut(s)	989
PpsI	GAGTC	1 cut(s)	989
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	607
Psp1406I	AACGTT	1 cut(s)	973
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	3 cut(s)	753, 795, 990
PspPI	GGNCC	3 cut(s)	80, 94, 337
PspPPI	RGGWCCY	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
Rsr2I	CGGWCCG	1 cut(s)	80
RsrII	CGGWCCG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	607
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	191, 450, 507, 542
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	3 cut(s)	80, 94, 337
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	3 cut(s)	229, 639, 754
SfcI	CTRYAG	3 cut(s)	243, 711, 759
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	80, 94, 337
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	518, 903, 948
SspMI	CTAG	2 cut(s)	345, 1039
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	5 cut(s)	721, 736, 745, 1017, 1033
TaiI	ACGT	3 cut(s)	106, 176, 976
TaqI	TCGA	1 cut(s)	777
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	3 cut(s)	518, 903, 948
TauI	GCSGC	5 cut(s)	167, 209, 558, 773, 940
Tru1I	TTAA	4 cut(s)	191, 450, 507, 542
Tru9I	TTAA	4 cut(s)	191, 450, 507, 542
TscAI	CASTG	2 cut(s)	661, 739
TseFI	GTSAC	3 cut(s)	104, 169, 925
TseI	GCWGC	6 cut(s)	262, 581, 659, 767, 850, 912
Tsp45I	GTSAC	3 cut(s)	104, 169, 925
TspDTI	ATGAA	5 cut(s)	29, 240, 408, 414, 791
TspRI	CASTG	2 cut(s)	661, 739
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	80, 94, 337
XceI	RCATGY	1 cut(s)	926
XspI	CTAG	2 cut(s)	345, 1039
ZraI	GACGTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.