Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Forward (+)

10352741 .. 10355658

Gene Structure 2918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTTTCGCTTCGGCGCTCAACGCTCCTAACGGCCTTCATCGTCTACCGTCTTCCCGCCACGAAATAACCCGAACCGGACCCGCCAGTCTGGTCCTGCCACGTCACCTTCCGGCTCGCTTCTCGTCCACGCTCGCCTTCTCCCGCCGTAAGAACCACCGCGCCGCGGTGACATCAGCTCAGCCGAAGATAAAGAAGAAAAGCGCGGCGAAGAATGAGGAGGATGAAGTGGACGGCGATGCTATAGACGCTTTGTTTTCGCTGCTGGAGGAAGACCTCAGAAACGACGGCGTGTCGTTTGATGATGACGGCGAAGACGACGAGATAAGTGAAGAGGACCTGGCTAGGCTTGAAGAGGAACTGGCGGAGGCATTTGGTGCGGTTGATGAGGATGAAGATGAAGACGAGGTAGAAGAGGAGGATGACGAAGACGGCGATGTTGATGTTGTTCAGAGCGATGCGACTGAAGAAGAAGAAGAAGAAGAAGAAGATGAGGAGGAGGAGGAGGACGACGATGAAGTTGAAGTAGCTGTGAAGCTTAAGACTTGGCAATTTCGGAGATTGGCTTCAGCTTTAAAAGTCGGTCGCCGCAAAACCAGTATAAAAGCCCTTGCAGCTGAGCTTTGTCTTGACAGGGCTCTTGTTCTTCAAATGCTTCGTGATCCGCCTCCAAATCTTTTGATGCTCAGTGCTGCTCTACCTGATGTACCTGCTCCTAAAAAATCTGTGCCTGAACCAAAGCCTGTAGAAACTGTTGTGGAAACCACTGTAGAAACTGTTGTGGAACCTACTACAAATGCTGCAGCGGTCGAAACTGCAGTGAAGGTGCCGGTTCATGTCCGGCAACAAAAGTTTTCTGGTCAGAAGAGACTGAAGAAAGTGCATCTTGACACCCTTGAAAGAGTTTATAGAAGAACAAAGCGCCCAACAAATGCAATTGTCAGCAGCATAGTGCATGTGACAAACCTGCCGCGCAAAAGAATTGTGAAATGGTTTGAAGACAAACGTTCTGAAGAGGGGGTTCCTGACTCTCGGCATCCATATCAACCGTCTGCTCCTACTACTGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

357

Amino Acids

39.89

Weight (kDa)

4.69

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
Acc36I	ACCTGC	2 cut(s)	718, 975
AccB1I	GGYRCC	1 cut(s)	826
AccI	GTMKAC	1 cut(s)	46
AccII	CGCG	4 cut(s)	162, 167, 206, 973
AclI	AACGTT	1 cut(s)	1006
AclWI	GGATC	1 cut(s)	656
AcuI	CTGAAG	4 cut(s)	486, 552, 893, 1032
AfaI	GTAC	1 cut(s)	708
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	539
AgsI	TTSAA	5 cut(s)	353, 524, 650, 899, 998
AhdI	GACNNNNNGTC	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	6 cut(s)	179, 530, 538, 572, 617, 622
AluI	AGCT	6 cut(s)	179, 530, 538, 572, 617, 622
Alw26I	GTCTC	1 cut(s)	862
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	6 cut(s)	262, 614, 692, 800, 803, 945
AspLEI	GCGC	5 cut(s)	19, 164, 206, 924, 975
AspS9I	GGNCC	3 cut(s)	80, 94, 337
AsuHPI	GGTGA	2 cut(s)	98, 181
AvaII	GGWCC	3 cut(s)	80, 94, 337
BanI	GGYRCC	1 cut(s)	826
BanII	GRGCYC	1 cut(s)	640
BbsI	GAAGAC	6 cut(s)	45, 279, 321, 408, 435, 1005
BbvI	GCAGC	6 cut(s)	249, 626, 679, 787, 815, 957
BceAI	ACGGC	6 cut(s)	49, 132, 250, 304, 325, 448
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	862
BfaI	CTAG	2 cut(s)	345, 1072
BfmI	CTRYAG	5 cut(s)	243, 744, 768, 801, 816
BfoI	RGCGCY	2 cut(s)	20, 925
BfrI	CTTAAG	1 cut(s)	539
BfuAI	ACCTGC	2 cut(s)	718, 975
BlpI	GCTNAGC	2 cut(s)	180, 618
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	3 cut(s)	80, 94, 337
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	3 cut(s)	80, 94, 337
BmiI	GGNNCC	4 cut(s)	82, 786, 828, 1023
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	5 cut(s)	229, 448, 672, 892, 1045
BpiI	GAAGAC	6 cut(s)	45, 279, 321, 408, 435, 1005
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	2 cut(s)	180, 618
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	829
Bse1I	ACTGG	3 cut(s)	87, 366, 597
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	4 cut(s)	229, 397, 427, 1036
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	194, 292, 609, 700
BseNI	ACTGG	3 cut(s)	87, 366, 597
BseRI	GAGGAG	6 cut(s)	233, 431, 509, 512, 515, 518
BseXI	GCAGC	6 cut(s)	249, 626, 679, 787, 815, 957
Bsh1236I	CGCG	4 cut(s)	162, 167, 206, 973
Bsh1285I	CGRYCG	2 cut(s)	586, 810
BshFI	GGCC	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	826
BsiEI	CGRYCG	2 cut(s)	586, 810
BsiSI	CCGG	4 cut(s)	78, 113, 830, 841
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	862
BsnI	GGCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	1 cut(s)	661
Bsp1720I	GCTNAGC	2 cut(s)	180, 618
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	4 cut(s)	193, 291, 610, 699
BspFNI	CGCG	4 cut(s)	162, 167, 206, 973
BspLI	GGNNCC	4 cut(s)	82, 786, 828, 1023
BspMAI	CTGCAG	2 cut(s)	805, 820
BspMI	ACCTGC	2 cut(s)	718, 975
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	1 cut(s)	826
BspTI	CTTAAG	1 cut(s)	539
BsrFI	RCCGGY	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	87, 366, 597
BssAI	RCCGGY	1 cut(s)	829
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	661
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	6 cut(s)	51, 754, 769, 778, 1050, 1066
Bst6I	CTCTTC	5 cut(s)	327, 348, 408, 860, 1008
BstAFI	CTTAAG	1 cut(s)	539
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	118, 135
BstDEI	CTNAG	4 cut(s)	180, 278, 618, 686
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	4 cut(s)	229, 397, 427, 1036
BstFNI	CGCG	4 cut(s)	162, 167, 206, 973
BstH2I	RGCGCY	2 cut(s)	20, 925
BstHHI	GCGC	5 cut(s)	19, 164, 206, 924, 975
BstKTI	GATC	1 cut(s)	664
BstMAI	GTCTC	1 cut(s)	862
BstMBI	GATC	1 cut(s)	661
BstMCI	CGRYCG	2 cut(s)	586, 810
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 614
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	5 cut(s)	243, 744, 768, 801, 816
BstUI	CGCG	4 cut(s)	162, 167, 206, 973
BstV1I	GCAGC	6 cut(s)	249, 626, 679, 787, 815, 957
BstV2I	GAAGAC	6 cut(s)	45, 279, 321, 408, 435, 1005
BsuRI	GGCC	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	3 cut(s)	252, 450, 471
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	229, 397, 427, 1036
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	3 cut(s)	694, 765, 825
BveI	ACCTGC	2 cut(s)	718, 975
Cac8I	GCNNGC	2 cut(s)	118, 135
CfoI	GCGC	5 cut(s)	19, 164, 206, 924, 975
Cfr10I	RCCGGY	1 cut(s)	829
Cfr13I	GGNCC	3 cut(s)	80, 94, 337
Cfr42I	CCGCGG	1 cut(s)	168
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	707
CviAII	CATG	2 cut(s)	836, 956
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	4 cut(s)	180, 278, 618, 686
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
DraI	TTTAAA	1 cut(s)	576
DrdI	GACNNNNNNGTC	1 cut(s)	87
DriI	GACNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	87
Eam1104I	CTCTTC	5 cut(s)	327, 348, 408, 860, 1008
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	5 cut(s)	327, 348, 408, 860, 1008
EciI	GGCGGA	2 cut(s)	380, 654
Eco24I	GRGCYC	1 cut(s)	640
Eco47I	GGWCC	3 cut(s)	80, 94, 337
Eco57I	CTGAAG	4 cut(s)	486, 552, 893, 1032
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	640
FaeI	CATG	2 cut(s)	839, 959
FaiI	YATR	7 cut(s)	245, 602, 837, 909, 950, 957, 1042
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FatI	CATG	2 cut(s)	835, 955
FauI	CCCGC	3 cut(s)	65, 91, 152
FblI	GTMKAC	1 cut(s)	46
FokI	GGATG	4 cut(s)	236, 404, 434, 1023
FriOI	GRGCYC	1 cut(s)	640
FspBI	CTAG	2 cut(s)	345, 1072
GlaI	GCGC	5 cut(s)	18, 163, 205, 923, 974
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	20, 925
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	4 cut(s)	78, 113, 830, 841
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	5 cut(s)	19, 164, 206, 924, 975
Hin1II	CATG	2 cut(s)	839, 959
Hin6I	GCGC	5 cut(s)	17, 162, 204, 922, 973
HinP1I	GCGC	5 cut(s)	17, 162, 204, 922, 973
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	1 cut(s)	1028
HpaII	CCGG	4 cut(s)	78, 113, 830, 841
HphI	GGTGA	2 cut(s)	98, 181
Hpy166II	GTNNAC	4 cut(s)	47, 129, 232, 1069
Hpy188I	TCNGA	5 cut(s)	281, 453, 558, 864, 1012
Hpy188III	TCNNGA	4 cut(s)	629, 659, 887, 1025
Hpy8I	GTNNAC	4 cut(s)	47, 129, 232, 1069
Hpy99I	CGWCG	3 cut(s)	290, 323, 515
HpyAV	CCTTC	4 cut(s)	47, 119, 148, 817
HpyCH4III	ACNGT	6 cut(s)	51, 754, 769, 778, 1050, 1066
HpyCH4IV	ACGT	2 cut(s)	103, 1006
HpyCH4V	TGCA	6 cut(s)	614, 803, 818, 883, 935, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 614
HpyF3I	CTNAG	4 cut(s)	180, 278, 618, 686
HpySE526I	ACGT	2 cut(s)	103, 1006
Hsp92II	CATG	2 cut(s)	839, 959
HspAI	GCGC	5 cut(s)	17, 162, 204, 922, 973
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	661
LmnI	GCTCC	3 cut(s)	31, 718, 1060
Lsp1109I	GCAGC	6 cut(s)	249, 626, 679, 787, 815, 957
LweI	GCATC	5 cut(s)	229, 448, 672, 892, 1045
MaeI	CTAG	2 cut(s)	345, 1072
MaeII	ACGT	2 cut(s)	103, 1006
MaeIII	GTNAC	3 cut(s)	104, 169, 958
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MfeI	CAATTG	1 cut(s)	936
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	3 cut(s)	551, 936, 981
MlyI	GAGTC	1 cut(s)	1022
MseI	TTAA	2 cut(s)	540, 575
MspA1I	CMGCKG	3 cut(s)	167, 617, 806
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	4 cut(s)	78, 113, 830, 841
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	936
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	4 cut(s)	162, 167, 206, 973
MwoI	GCNNNNNNNGC	4 cut(s)	23, 248, 377, 614
NdeII	GATC	1 cut(s)	661
NlaIII	CATG	2 cut(s)	839, 959
NlaIV	GGNNCC	4 cut(s)	82, 786, 828, 1023
NmeAIII	GCCGAG	1 cut(s)	1012
NmuCI	GTSAC	3 cut(s)	104, 169, 958
NspI	RCATGY	1 cut(s)	959
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 432
PleI	GAGTC	1 cut(s)	1022
PpsI	GAGTC	1 cut(s)	1022
PpuMI	RGGWCCY	1 cut(s)	337
Psp1406I	AACGTT	1 cut(s)	1006
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	4 cut(s)	82, 786, 828, 1023
PspPI	GGNCC	3 cut(s)	80, 94, 337
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	2 cut(s)	805, 820
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	540, 575
Sau3AI	GATC	1 cut(s)	661
Sau96I	GGNCC	3 cut(s)	80, 94, 337
SchI	GAGTC	1 cut(s)	1022
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	5 cut(s)	229, 448, 672, 892, 1045
SfcI	CTRYAG	5 cut(s)	243, 744, 768, 801, 816
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	80, 94, 337
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	551, 936, 981
SspMI	CTAG	2 cut(s)	345, 1072
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	6 cut(s)	51, 754, 769, 778, 1050, 1066
TaiI	ACGT	2 cut(s)	106, 1009
TaqI	TCGA	1 cut(s)	810
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	3 cut(s)	551, 936, 981
TauI	GCSGC	4 cut(s)	167, 209, 591, 973
Tru1I	TTAA	2 cut(s)	540, 575
Tru9I	TTAA	2 cut(s)	540, 575
TscAI	CASTG	3 cut(s)	694, 772, 825
TseFI	GTSAC	3 cut(s)	104, 169, 958
TseI	GCWGC	6 cut(s)	262, 614, 692, 800, 803, 945
Tsp45I	GTSAC	3 cut(s)	104, 169, 958
TspDTI	ATGAA	6 cut(s)	29, 240, 408, 414, 531, 824
TspRI	CASTG	3 cut(s)	694, 772, 825
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	3 cut(s)	80, 94, 337
XceI	RCATGY	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	46
XspI	CTAG	2 cut(s)	345, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.