Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Reverse (-)

42704126 .. 42707738

Gene Structure 3613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0279800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGAAAATACATGAAGAAATCCAAAATCACAGGCGACATCGCCGTCATGGAGGTTTCAATTTCACCTCAGTCCTCCCTCGGCGTTCGAACCAGAGCCAAAACCCTAGCCCTCCAGAAGCTCCACCAGCAGCAGCAGCAATCGCCCGACTCCGATTCCTCGTCTCTGTACTATCTCCAGCTCCGAAGCCGCCGCCTTGAAAAGCCGCCGCTGCGAAGCGACGTCAACAAGCAGGGTCAGGGTCCTCGGGATTGCTGCGCGGGGGGCAGGGCCGTGAATTCGAGGTTGAGTGTGGGCTCGTCCGCGGATTTGGGCTTGGATGAGAGGAGGAAGGAGAAGGACGGGGAGGGGTGTTTTGGTAATGTTGAAAGTGAAGCAGAGTATGCCAACGATGTTGAGGCTTCATTTGGGGAAAACAACTTGGATTTTGATGGCAGAGATAGGAGCACCCGAGAAAGCACGCCATGCAGCTTGATAAGGAACTCGGACTCTGTTGGAACCCCTGGTTCTACAACAAGGCGGTCAAGTTCTATTGCAAATAACCAAAGAGTTAGAAATGATACCCAAAGAACCATTCCAACTGCACTTGATATGGATGAGTTCTTTGCCCAAGCTGAGCAGCAGCAACAGAAACTCTTTATGGAGAAGTACAACTTTGATATTACCAGTGATATGCCCCTTCCAGGAAGGTATGAATGGGAGCAAGTGATTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

238

Amino Acids

26.6

Weight (kDa)

6.02

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	191 - 236	3.3e-18	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AatII	GACGTC	1 cut(s)	225
AccII	CGCG	2 cut(s)	260, 305
AciI	CCGC	8 cut(s)	190, 193, 206, 209, 260, 303, 305, 520
AcsI	RAATTY	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	170, 650
AfiI	CCNNNNNNNGG	1 cut(s)	683
AgsI	TTSAA	3 cut(s)	60, 200, 368
AjnI	CCWGG	2 cut(s)	502, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	558, 590
AluBI	AGCT	4 cut(s)	121, 181, 471, 614
AluI	AGCT	4 cut(s)	121, 181, 471, 614
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	1 cut(s)	168
Ama87I	CYCGRG	2 cut(s)	246, 450
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	8 cut(s)	130, 133, 136, 211, 255, 468, 619, 622
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	242, 270
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	88
AvaI	CYCGRG	2 cut(s)	246, 450
AvaII	GGWCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	449
BbvI	GCAGC	8 cut(s)	142, 145, 148, 198, 242, 480, 631, 634
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	2 cut(s)	29, 257
BciT130I	CCWGG	2 cut(s)	504, 684
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	107
BlpI	GCTNAGC	1 cut(s)	615
Bme1390I	CCNGG	2 cut(s)	504, 684
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	2 cut(s)	246, 450
BmgT120I	GGNCC	2 cut(s)	242, 270
BmiI	GGNNCC	2 cut(s)	243, 499
BmrFI	CCNGG	2 cut(s)	504, 684
BpmI	CTGGAG	2 cut(s)	98, 161
Bpu1102I	GCTNAGC	1 cut(s)	615
Bpu14I	TTCGAA	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	79, 245, 303, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse1I	ACTGG	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	504, 684
BseDI	CCNNGG	4 cut(s)	79, 245, 303, 502
BseGI	GGATG	2 cut(s)	325, 601
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	83, 606
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	8 cut(s)	142, 145, 148, 198, 242, 480, 631, 634
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	2 cut(s)	260, 305
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	449
BsiHKCI	CYCGRG	2 cut(s)	246, 450
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	2 cut(s)	246, 450
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	299, 449
Bsp1720I	GCTNAGC	1 cut(s)	615
BspACI	CCGC	8 cut(s)	190, 193, 206, 209, 260, 303, 305, 520
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	82, 607
BspFNI	CGCG	2 cut(s)	260, 305
BspLI	GGNNCC	2 cut(s)	243, 499
BspT104I	TTCGAA	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	4 cut(s)	79, 245, 303, 502
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	504, 684
BstACI	GRCGYC	1 cut(s)	222
BstAPI	GCANNNNNTGC	2 cut(s)	383, 465
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	69, 615
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	325, 601
BstFNI	CGCG	2 cut(s)	260, 305
BstHHI	GCGC	1 cut(s)	260
BstMAI	GTCTC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	7 cut(s)	127, 136, 142, 211, 264, 383, 465
BstNI	CCWGG	2 cut(s)	504, 684
BstSCI	CCNGG	2 cut(s)	502, 682
BstUI	CGCG	2 cut(s)	260, 305
BstV1I	GCAGC	8 cut(s)	142, 145, 148, 198, 242, 480, 631, 634
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	325, 601
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	461
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	242, 270
Cfr42I	CCGCGG	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	169, 649
CviAII	CATG	3 cut(s)	13, 49, 465
CviQI	GTAC	2 cut(s)	169, 649
DdeI	CTNAG	2 cut(s)	69, 615
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	242
Eco88I	CYCGRG	2 cut(s)	246, 450
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	502, 682
EcoT38I	GRGCYC	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	16, 52, 468
FaiI	YATR	8 cut(s)	14, 50, 384, 466, 593, 641, 674, 693
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FatI	CATG	3 cut(s)	12, 48, 464
FauI	CCCGC	1 cut(s)	253
FokI	GGATG	2 cut(s)	332, 608
FriOI	GRGCYC	1 cut(s)	299
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	259
GsuI	CTGGAG	2 cut(s)	98, 161
HaeIII	GGCC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	16, 52, 468
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	4 cut(s)	149, 155, 488, 709
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	154, 185, 487
Hpy188III	TCNNGA	2 cut(s)	115, 248
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	4 cut(s)	325, 331, 681, 689
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	468, 536, 584
HpyF10VI	GCNNNNNNNGC	7 cut(s)	127, 136, 142, 211, 264, 383, 465
HpyF3I	CTNAG	2 cut(s)	69, 615
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	16, 52, 468
HspAI	GCGC	1 cut(s)	258
KspI	CCGCGG	1 cut(s)	306
LmnI	GCTCC	4 cut(s)	126, 186, 444, 700
Lsp1109I	GCAGC	8 cut(s)	142, 145, 148, 198, 242, 480, 631, 634
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	222
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	299, 449
MluCI	AATT	2 cut(s)	60, 277
MlyI	GAGTC	2 cut(s)	143, 482
MmeI	TCCRAC	2 cut(s)	475, 602
MspA1I	CMGCKG	2 cut(s)	211, 305
MspR9I	CCNGG	2 cut(s)	504, 684
MvaI	CCWGG	2 cut(s)	504, 684
MvnI	CGCG	2 cut(s)	260, 305
MwoI	GCNNNNNNNGC	7 cut(s)	127, 136, 142, 211, 264, 383, 465
NlaIII	CATG	3 cut(s)	16, 52, 468
NlaIV	GGNNCC	2 cut(s)	243, 499
NmeAIII	GCCGAG	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	155, 709
PfoI	TCCNGGA	1 cut(s)	682
PleI	GAGTC	2 cut(s)	143, 482
PpsI	GAGTC	2 cut(s)	143, 482
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	502, 682
PspGI	CCWGG	2 cut(s)	502, 682
PspN4I	GGNNCC	2 cut(s)	243, 499
PspPI	GGNCC	2 cut(s)	242, 270
PspPPI	RGGWCCY	1 cut(s)	242
RsaI	GTAC	2 cut(s)	170, 650
RsaNI	GTAC	2 cut(s)	169, 649
SacII	CCGCGG	1 cut(s)	306
Sau96I	GGNCC	2 cut(s)	242, 270
SchI	GAGTC	2 cut(s)	143, 482
ScrFI	CCNGG	2 cut(s)	504, 684
SduI	GDGCHC	2 cut(s)	299, 449
SetI	ASST	9 cut(s)	57, 70, 123, 183, 225, 287, 473, 616, 692
Sfr303I	CCGCGG	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	2 cut(s)	60, 277
SsiI	CCGC	8 cut(s)	190, 193, 206, 209, 260, 303, 305, 520
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	502, 682
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	88, 281
TasI	AATT	2 cut(s)	60, 277
TatI	WGTACW	2 cut(s)	168, 648
TauI	GCSGC	4 cut(s)	192, 195, 208, 211
TfiI	GAWTC	2 cut(s)	155, 709
TscAI	CASTG	1 cut(s)	673
TseI	GCWGC	8 cut(s)	130, 133, 136, 211, 255, 468, 619, 622
TspDTI	ATGAA	3 cut(s)	29, 393, 708
TspRI	CASTG	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	1 cut(s)	107
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.