Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Forward (+)

23358357 .. 23360746

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30260.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTTCTTCAAGGAAATGGGCAACCACCATATCCTTCGCAGCTTCCTGTATCTATTTCACTGTCATCATCATTCAGATTCCTCTTTTCAGTGTCCCTTGTAGATCTGGAAGATGTACATCACCAATAGCAATCACAGCCCCTCAGCTAATGTCATGTGATCTGATGCCTACAGTTGCAATAAAGGCTCTAGTCTACCCTGGTGCTATTGCAAAAGCATTGGTGAAAAATGAAGCAATCCCAAGTTATAGTAACTTGAATTTACATGACCCCTCTGCTGTAACTGCAGCTGATGCAATTGCTGATCTGCAGCGCCTAGAGGTTCTGGTTGGAAGCTACTTGTCAGTGGCTGGAGCATTCTGGGGACTTATAAAACCATGGAGAGTGAGCTTCTATGGTGTGCTTCTTATCCTATGGGGCCTTGTTAAGGAATTTATGTTGACGAAATCAGCTGATCCGAGTCTTATATACATCCACCCAGCAATGTCAATTGCTATCTGTTCTGCCTTCTTGTCTATAGCTAAGGATGTAAGGAGGATAATTCGAAGCTATAGAGGTCTTCAGATTGTAAAAGAGAAACCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.26

Weight (kDa)

9.51

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	2 cut(s)	259, 431
AcuI	CTGAAG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	12, 259
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	8 cut(s)	44, 148, 290, 336, 390, 452, 521, 549
AluI	AGCT	8 cut(s)	44, 148, 290, 336, 390, 452, 521, 549
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	3 cut(s)	41, 287, 310
ApoI	RAATTY	2 cut(s)	259, 431
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	2 cut(s)	114, 235
AsuII	TTCGAA	1 cut(s)	544
BbsI	GAAGAC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	53, 299, 322
BciT130I	CCWGG	1 cut(s)	201
BfaI	CTAG	2 cut(s)	191, 317
BfmI	CTRYAG	5 cut(s)	171, 285, 308, 516, 550
BfoI	RGCGCY	1 cut(s)	316
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	3 cut(s)	42, 288, 311
BlsI	GCNGC	3 cut(s)	43, 289, 312
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	156, 283
BpiI	GAAGAC	1 cut(s)	551
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	2 cut(s)	144, 522
Bpu14I	TTCGAA	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	199, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	199, 377
BseGI	GGATG	2 cut(s)	471, 532
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	53, 299, 322
BseYI	CCCAGC	1 cut(s)	478
BshFI	GGCC	1 cut(s)	420
BslFI	GGGAC	2 cut(s)	80, 378
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	80, 378
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	420
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	4 cut(s)	104, 160, 304, 454
Bsp19I	CCATGG	1 cut(s)	377
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	419
BspMAI	CTGCAG	2 cut(s)	289, 312
BspPI	GGATC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	199, 377
BssMI	GATC	4 cut(s)	104, 160, 304, 454
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	64, 175
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	144, 522
BstDSI	CCRYGG	1 cut(s)	377
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	2 cut(s)	471, 532
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	4 cut(s)	107, 163, 307, 457
BstMBI	GATC	4 cut(s)	104, 160, 304, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 185, 284, 293
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	5 cut(s)	171, 285, 308, 516, 550
BstV1I	GCAGC	3 cut(s)	53, 299, 322
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	471, 532
BtsIMutI	CAGTG	3 cut(s)	60, 97, 351
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	3 cut(s)	156, 266, 378
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	144, 522
DpnI	GATC	4 cut(s)	106, 162, 306, 456
DpnII	GATC	4 cut(s)	104, 160, 304, 454
Eco130I	CCWWGG	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	545
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	3 cut(s)	159, 269, 381
FaqI	GGGAC	2 cut(s)	80, 378
FatI	CATG	3 cut(s)	155, 265, 377
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	42, 288, 311
FokI	GGATG	2 cut(s)	458, 539
Fsp4HI	GCNGC	3 cut(s)	42, 288, 311
FspBI	CTAG	2 cut(s)	191, 317
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	3 cut(s)	42, 288, 311
GsaI	CCCAGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	420
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	159, 269, 381
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	2 cut(s)	79, 460
HphI	GGTGA	2 cut(s)	114, 235
Hpy166II	GTNNAC	2 cut(s)	196, 441
Hpy188I	TCNGA	4 cut(s)	78, 165, 459, 564
Hpy188III	TCNNGA	1 cut(s)	108
Hpy8I	GTNNAC	2 cut(s)	196, 441
HpyAV	CCTTC	2 cut(s)	46, 517
HpyCH4III	ACNGT	2 cut(s)	64, 175
HpyCH4V	TGCA	5 cut(s)	179, 212, 287, 296, 310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 185, 284, 293
HpyF3I	CTNAG	2 cut(s)	144, 522
Hsp92II	CATG	3 cut(s)	159, 269, 381
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	104, 160, 304, 454
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	8 cut(s)	61, 93, 186, 213, 311, 336, 346, 492
Lsp1109I	GCAGC	3 cut(s)	53, 299, 322
LweI	GCATC	2 cut(s)	156, 283
MaeI	CTAG	2 cut(s)	191, 317
MaeIII	GTNAC	2 cut(s)	251, 280
MalI	GATC	4 cut(s)	106, 162, 306, 456
MboI	GATC	4 cut(s)	104, 160, 304, 454
MboII	GAAGA	2 cut(s)	123, 551
MfeI	CAATTG	2 cut(s)	297, 489
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	5 cut(s)	259, 297, 431, 489, 540
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	6 cut(s)	93, 153, 283, 313, 528, 548
MseI	TTAA	1 cut(s)	426
MspA1I	CMGCKG	2 cut(s)	290, 452
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	2 cut(s)	297, 489
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	137, 185, 284, 293
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	4 cut(s)	104, 160, 304, 454
NlaIII	CATG	3 cut(s)	159, 269, 381
NlaIV	GGNNCC	1 cut(s)	419
NspV	TTCGAA	1 cut(s)	544
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	43, 289, 312
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	418
PstI	CTGCAG	2 cut(s)	289, 312
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	2 cut(s)	290, 452
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	3 cut(s)	42, 288, 311
Sau3AI	GATC	4 cut(s)	104, 160, 304, 454
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	156, 283
SfcI	CTRYAG	5 cut(s)	171, 285, 308, 516, 550
SfuI	TTCGAA	1 cut(s)	544
Sse9I	AATT	5 cut(s)	259, 297, 431, 489, 540
SspMI	CTAG	2 cut(s)	191, 317
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	64, 175
TaqI	TCGA	1 cut(s)	544
TasI	AATT	5 cut(s)	259, 297, 431, 489, 540
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	3 cut(s)	67, 97, 351
TseI	GCWGC	3 cut(s)	41, 287, 310
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	3 cut(s)	67, 97, 351
XagI	CCTNNNNNAGG	1 cut(s)	425
XapI	RAATTY	2 cut(s)	259, 431
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	191, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.