Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Reverse (-)

7465163 .. 7467459

Gene Structure 2297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAACGGTTCCATCTCCACCGTCATCCGCATCGTCAAAATCGTCAAAGGGATGGATAAACAGCATCTCAGCAATCGCCTCTCGCGTCTACTTCTTCCTCATCATTCTTCAGATCCCGCTTTTCAGAGTTCCATGCAGATCTGGCATGTGTACCACACCGTTGCATGTCACATCTTCCCAGCTGATTGCAAGTGAAATCTTTCCTGTTACTGCAGTCAAGGCCCTCCTCTACCCCGGAGCTGTTGCAAATGGACTTGCAAAAAACATGACTGTCCCAAGTTGGAATAACCTATTGGACGTCTATAACTTGACTAGTGCAAAGGAAGCCTCTCCAGTTACTGATCTCCAGCGCTTAGAGGTTCTAGCCGGAAGTTACTTCGCTGTGGCTGGAGCTCTTGTGGGAATTCTAAAACGAGGGAGGATGAGCATGTTCGGGATGCTTCTAGTTCTCTGGGGCCTCATTAAAGAAGGGATTCTCGGAAAGCCTGTGAACACAGACCCTACAAAAGCTGTGTTTGTCTACCCAACCATGCTCATTGCTGTAATCGCTGCTTTCTCGTCTGTAAAGTACAATATGAAGAAGGCTGCCGCAGGAAGTGCACCTGCAGCTAGGCCCATTGCAAAACCTCTTCAAAGGTCTTCAAAATCTAAGCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

23.4

Weight (kDa)

10.24

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
AatII	GACGTC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	613
AccI	GTMKAC	2 cut(s)	90, 522
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	30, 119, 591
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	2 cut(s)	154, 572
AfeI	AGCGCT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	635, 645
AhlI	ACTAGT	1 cut(s)	314
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	6 cut(s)	184, 242, 395, 512, 611, 655
AluI	AGCT	6 cut(s)	184, 242, 395, 512, 611, 655
Alw21I	GWGCWC	2 cut(s)	397, 604
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	341
Aor51HI	AGCGCT	1 cut(s)	353
AoxI	GGCC	3 cut(s)	222, 457, 614
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	3 cut(s)	551, 587, 608
ApoI	RAATTY	1 cut(s)	405
Asp700I	GAANNNNTTC	2 cut(s)	201, 474
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	3 cut(s)	223, 457, 615
AsuC2I	CCSGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	2 cut(s)	397, 604
BbvI	GCAGC	3 cut(s)	538, 574, 620
BccI	CCATC	2 cut(s)	22, 48
BcnI	CCSGG	1 cut(s)	237
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	4 cut(s)	315, 365, 446, 612
BfmI	CTRYAG	2 cut(s)	213, 606
BfoI	RGCGCY	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	4 cut(s)	552, 588, 591, 609
BlsI	GCNGC	4 cut(s)	553, 589, 592, 610
Bme1390I	CCNGG	1 cut(s)	237
BmgT120I	GGNCC	3 cut(s)	223, 457, 615
BmiI	GGNNCC	2 cut(s)	12, 458
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	3 cut(s)	41, 75, 429
BpiI	GAAGAC	1 cut(s)	633
BpmI	CTGGAG	3 cut(s)	318, 332, 411
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bse1I	ACTGG	1 cut(s)	335
Bse3DI	GCAATG	2 cut(s)	537, 618
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	4 cut(s)	26, 59, 429, 444
BseMI	GCAATG	2 cut(s)	537, 618
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	538, 574, 620
BseYI	CCCAGC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	224, 459, 616
BsiHKAI	GWGCWC	2 cut(s)	397, 604
BsiSI	CCGG	2 cut(s)	237, 369
BslFI	GGGAC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	224, 459, 616
Bsp1286I	GDGCHC	2 cut(s)	397, 604
Bsp143I	GATC	3 cut(s)	114, 140, 343
BspACI	CCGC	3 cut(s)	30, 119, 591
BspANI	GGCC	3 cut(s)	224, 459, 616
BspCNI	CTCAG	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	12, 458
BspMAI	CTGCAG	2 cut(s)	217, 610
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	537, 618
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	3 cut(s)	114, 140, 343
BssNI	GRCGYC	1 cut(s)	300
Bst4CI	ACNGT	4 cut(s)	10, 24, 162, 274
Bst6I	CTCTTC	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstDEI	CTNAG	3 cut(s)	70, 355, 651
BstF5I	GGATG	4 cut(s)	26, 59, 429, 444
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	3 cut(s)	117, 143, 346
BstMBI	GATC	3 cut(s)	114, 140, 343
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 221, 326, 548, 599, 608
BstNSI	RCATGY	3 cut(s)	151, 170, 433
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	2 cut(s)	213, 606
BstSLI	GKGCMC	1 cut(s)	604
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	538, 574, 620
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	2 cut(s)	114, 140
BstYI	RGATCY	2 cut(s)	114, 140
BsuRI	GGCC	3 cut(s)	224, 459, 616
BtsCI	GGATG	4 cut(s)	26, 59, 429, 444
BveI	ACCTGC	1 cut(s)	613
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	3 cut(s)	223, 457, 615
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	153, 571
CviAII	CATG	6 cut(s)	135, 148, 167, 268, 430, 532
CviQI	GTAC	2 cut(s)	153, 571
DdeI	CTNAG	3 cut(s)	70, 355, 651
DpnI	GATC	3 cut(s)	116, 142, 345
DpnII	GATC	3 cut(s)	114, 140, 343
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	397
Eco47III	AGCGCT	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	395
EcoO109I	RGGNCCY	2 cut(s)	223, 457
EcoRI	GAATTC	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	6 cut(s)	138, 151, 170, 271, 433, 535
FaiI	YATR	8 cut(s)	136, 149, 168, 269, 306, 431, 533, 578
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	6 cut(s)	134, 147, 166, 267, 429, 531
FauI	CCCGC	1 cut(s)	126
FblI	GTMKAC	2 cut(s)	90, 522
Fnu4HI	GCNGC	4 cut(s)	552, 588, 591, 609
FokI	GGATG	4 cut(s)	13, 66, 436, 451
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	4 cut(s)	552, 588, 591, 609
FspBI	CTAG	4 cut(s)	315, 365, 446, 612
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	4 cut(s)	552, 588, 591, 609
GsaI	CCCAGC	1 cut(s)	184
GsuI	CTGGAG	3 cut(s)	318, 332, 411
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	3 cut(s)	224, 459, 616
HapII	CCGG	2 cut(s)	237, 369
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	6 cut(s)	138, 151, 170, 271, 433, 535
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	475
HpaII	CCGG	2 cut(s)	237, 369
Hpy166II	GTNNAC	5 cut(s)	91, 153, 493, 523, 602
Hpy188I	TCNGA	3 cut(s)	114, 128, 482
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	5 cut(s)	91, 153, 493, 523, 602
HpyAV	CCTTC	2 cut(s)	464, 577
HpyCH4III	ACNGT	4 cut(s)	10, 24, 162, 274
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 221, 326, 548, 599, 608
HpyF3I	CTNAG	3 cut(s)	70, 355, 651
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	6 cut(s)	138, 151, 170, 271, 433, 535
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	114, 140, 343
LmnI	GCTCC	2 cut(s)	239, 392
Lsp1109I	GCAGC	3 cut(s)	538, 574, 620
LweI	GCATC	3 cut(s)	41, 75, 429
MaeI	CTAG	4 cut(s)	315, 365, 446, 612
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	4 cut(s)	169, 208, 337, 374
MalI	GATC	3 cut(s)	116, 142, 345
MboI	GATC	3 cut(s)	114, 140, 343
MboII	GAAGA	6 cut(s)	88, 101, 168, 592, 623, 633
MflI	RGATCY	2 cut(s)	114, 140
MhlI	GDGCHC	2 cut(s)	397, 604
MluCI	AATT	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	263
MroXI	GAANNNNTTC	2 cut(s)	201, 474
MseI	TTAA	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	2 cut(s)	237, 369
MspR9I	CCNGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	6 cut(s)	144, 221, 326, 548, 599, 608
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	114, 140, 343
NlaIII	CATG	6 cut(s)	138, 151, 170, 271, 433, 535
NlaIV	GGNNCC	2 cut(s)	12, 458
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	3 cut(s)	151, 170, 433
PaqCI	CACCTGC	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 84
PdmI	GAANNNNTTC	2 cut(s)	201, 474
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	553, 589, 592, 610
Psp124BI	GAGCTC	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	12, 458
PspPI	GGNCC	3 cut(s)	223, 457, 615
PstI	CTGCAG	2 cut(s)	217, 610
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	114, 140
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	2 cut(s)	154, 572
RsaNI	GTAC	2 cut(s)	153, 571
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	4 cut(s)	552, 588, 591, 609
Sau3AI	GATC	3 cut(s)	114, 140, 343
Sau96I	GGNCC	3 cut(s)	223, 457, 615
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	397, 604
SfaNI	GCATC	3 cut(s)	41, 75, 429
SfcI	CTRYAG	2 cut(s)	213, 606
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	3 cut(s)	30, 119, 591
SspMI	CTAG	4 cut(s)	315, 365, 446, 612
SstI	GAGCTC	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	4 cut(s)	10, 24, 162, 274
TaiI	ACGT	1 cut(s)	303
TasI	AATT	1 cut(s)	405
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	551, 587, 608
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	600
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	3 cut(s)	151, 170, 433
XmiI	GTMKAC	2 cut(s)	90, 522
XmnI	GAANNNNTTC	2 cut(s)	201, 474
XspI	CTAG	4 cut(s)	315, 365, 446, 612
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.