Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Reverse (-)

24927045 .. 24930162

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1206100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTTCTTCAAAGAAATGGGCAACCACCATATCTTCCATTGCTTCTTTTATATATTTCCTTGTCATTATTCTTCAAATTCCTCTTTTCAGCATTCCCTGTACCGGCGGAATATGTAGAACACCAGTAGAGGTAACATCCTCACAGTTAATTGCATCTGAAGTATTTCCTTTATTTCTAGTGAAGGCGCTACTCTACCCGGGGGCCTTTGCGAATGCATTCATCAAGAACAAAGCAATCCCAGGCTATGATAACTTGAAGTTATATAACTTCACCAATGTAAAGGCAGCTGATGCAATCTCTGACCTACAGCGTCTAGAGGTTCTTGTTGGAAGCTACTTATCAGTGGCAGGAGCATTTCTTGGTCTCATCAGACCAGGGAGAATGAGCCTCTTTGGTATGCTTCTCATCGTATGGGGGCTTGTAAGGGAAATCTTTTCGAGCAAATCAACGAGCACAGATCTTATATATATGTACCCAGCAATATCATTTGCCTTGTTTGCTGCCTTCTTGTCTATAACAAGAGATGTAAGGAGGATAATCCGTTGTTGCAGAGCTCCTCGATGTGTCCTTCTAGCGATAGTGACAATAATCCTCAAATCCTGGAAATTTTGTATCTTGTCTGAGTCTCCTCTACTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.63

Weight (kDa)

9.63

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	78, 608
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	103, 476
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	12, 77, 259
AjnI	CCWGG	3 cut(s)	241, 376, 602
AluBI	AGCT	3 cut(s)	290, 336, 557
AluI	AGCT	3 cut(s)	290, 336, 557
Alw21I	GWGCWC	2 cut(s)	458, 559
Alw26I	GTCTC	2 cut(s)	371, 633
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	287, 503
ApoI	RAATTY	2 cut(s)	78, 608
Asp700I	GAANNNNTTC	2 cut(s)	165, 218
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	2 cut(s)	200, 201
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	559
Bbv12I	GWGCWC	2 cut(s)	458, 559
BbvI	GCAGC	2 cut(s)	299, 490
BciT130I	CCWGG	3 cut(s)	243, 378, 604
BcnI	CCSGG	2 cut(s)	200, 201
BcoDI	GTCTC	2 cut(s)	371, 633
BfaI	CTAG	3 cut(s)	179, 317, 575
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	191
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	288, 504
BlsI	GCNGC	2 cut(s)	289, 505
Bme1390I	CCNGG	5 cut(s)	200, 201, 243, 378, 604
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	5 cut(s)	200, 201, 243, 378, 604
BmsI	GCATC	2 cut(s)	164, 283
BpuMI	CCSGG	2 cut(s)	200, 201
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	4 cut(s)	199, 200, 241, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	243, 378, 604
BseDI	CCNNGG	4 cut(s)	199, 200, 241, 377
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	2 cut(s)	549, 621
BseXI	GCAGC	2 cut(s)	299, 490
BseYI	CCCAGC	1 cut(s)	478
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	2 cut(s)	458, 559
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	105, 200
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	371, 633
BsmI	GAATGC	3 cut(s)	93, 218, 220
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	458, 559
Bsp143I	GATC	1 cut(s)	460
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	4 cut(s)	199, 200, 241, 377
BssMI	GATC	1 cut(s)	460
Bst2UI	CCWGG	3 cut(s)	243, 378, 604
Bst4CI	ACNGT	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	2 cut(s)	371, 633
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 500
BstNI	CCWGG	3 cut(s)	243, 378, 604
BstSCI	CCNGG	5 cut(s)	198, 199, 241, 376, 602
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	299, 490
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	204
Cfr9I	CCCGGG	1 cut(s)	199
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	102, 475
CviJI	RGCY	8 cut(s)	5, 206, 246, 290, 336, 390, 421, 557
CviKI_1	RGCY	8 cut(s)	5, 206, 246, 290, 336, 390, 421, 557
CviQI	GTAC	2 cut(s)	102, 475
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
EciI	GGCGGA	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	559
Eco31I	GGTCTC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRII	CCWGG	3 cut(s)	241, 376, 602
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	288, 504
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	2 cut(s)	288, 504
FspBI	CTAG	3 cut(s)	179, 317, 575
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	2 cut(s)	288, 504
GsaI	CCCAGC	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	105, 200
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	626
HpaII	CCGG	2 cut(s)	105, 200
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	160, 304, 374, 625
Hpy188III	TCNNGA	2 cut(s)	226, 317
HpyAV	CCTTC	3 cut(s)	178, 517, 581
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	155, 218, 296, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 500
HpyF3I	CTNAG	1 cut(s)	624
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	2 cut(s)	353, 562
Lsp1109I	GCAGC	2 cut(s)	299, 490
LweI	GCATC	2 cut(s)	164, 283
MaeI	CTAG	3 cut(s)	179, 317, 575
MaeIII	GTNAC	2 cut(s)	133, 583
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	2 cut(s)	27, 65
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	2 cut(s)	458, 559
MluCI	AATT	3 cut(s)	78, 150, 608
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	9 cut(s)	93, 124, 151, 313, 401, 528, 570, 605, 642
Mph1103I	ATGCAT	1 cut(s)	220
MroXI	GAANNNNTTC	2 cut(s)	165, 218
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	2 cut(s)	105, 200
MspR9I	CCNGG	5 cut(s)	200, 201, 243, 378, 604
Mva1269I	GAATGC	3 cut(s)	93, 218, 220
MvaI	CCWGG	3 cut(s)	243, 378, 604
MwoI	GCNNNNNNNGC	2 cut(s)	293, 500
NciI	CCSGG	2 cut(s)	200, 201
NdeII	GATC	1 cut(s)	460
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	583
NsiI	ATGCAT	1 cut(s)	220
PctI	GAATGC	3 cut(s)	93, 218, 220
PdmI	GAANNNNTTC	2 cut(s)	165, 218
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	2 cut(s)	289, 505
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	3 cut(s)	241, 376, 602
PspFI	CCCAGC	1 cut(s)	478
PspGI	CCWGG	3 cut(s)	241, 376, 602
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	103, 476
RsaNI	GTAC	2 cut(s)	102, 475
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	288, 504
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	5 cut(s)	200, 201, 243, 378, 604
SduI	GDGCHC	2 cut(s)	458, 559
SetI	ASST	6 cut(s)	135, 292, 309, 324, 338, 559
SfaNI	GCATC	2 cut(s)	164, 283
SfcI	CTRYAG	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	201
Sse9I	AATT	3 cut(s)	78, 150, 608
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	3 cut(s)	179, 317, 575
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	5 cut(s)	198, 199, 241, 376, 602
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	440, 562
TasI	AATT	3 cut(s)	78, 150, 608
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	287, 503
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	533
TspMI	CCCGGG	1 cut(s)	199
TspRI	CASTG	1 cut(s)	351
XapI	RAATTY	2 cut(s)	78, 608
XbaI	TCTAGA	1 cut(s)	316
XmaI	CCCGGG	1 cut(s)	199
XmnI	GAANNNNTTC	2 cut(s)	165, 218
XspI	CTAG	3 cut(s)	179, 317, 575
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.