Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Forward (+)

58592851 .. 58594822

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G034070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAACTGCTGCTTCATCGTCGTCGTCGTCCAAAGGATGGATGGGCAATATCCAAACGACGGCTGCTCGCATCTTTTTCATTCTAATCATTTTTCAGATCCCACTTTTCAGAGTTCCATGCAGAGCTGGTATGTGTACCACACCATTGCATTTCACATCTTCCCAGCTGATTACAAGTGAGATCTTTCCTGTTCCTGTAGTAAAGGCTCTTCTCTACCCTGGAGCTCTTGCAAATGGCCTCGTAAGGAACATGACTGCTCCAAGCTGGAATAACTTGTTAGAAATCTATAACTTGACCAATGCAAAGGAAGCCAATCCAGTTACTGATCTCCAGCGCTTAGAGGTTCTAACAGGGAGCTACTTTTCTGTGGCTGGAGCCCTTGTGGGTGTTCTGAAATCAGGGAGGATGAGCATGTTTGGGACACTTCTATTAATTTGGGGCCTCATCAAAGAAGGGATCTTAGGAAAGCCTGTGAACACAGATCCTACTAAAGCTGTCTATGTCTACCCAACTATGTTGCTTGCCTTGATCGCTGCCTTCTCATCTATAAAGTATAATGCGAAGAAGATTGTTAGACCTGCACCTGCTAGGCCTATTGCAAAGCCTCTTCAGAGGTCTTCAAAATCTAAGCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.07

Weight (kDa)

10.26

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	595
Acc36I	ACCTGC	2 cut(s)	589, 595
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	507
AclWI	GGATC	3 cut(s)	94, 467, 479
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	139
AfeI	AGCGCT	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	39, 61
AgsI	TTSAA	1 cut(s)	624
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	7 cut(s)	128, 169, 227, 267, 360, 497, 634
AluI	AGCT	7 cut(s)	128, 169, 227, 267, 360, 497, 634
Alw21I	GWGCWC	1 cut(s)	229
AlwI	GGATC	3 cut(s)	94, 467, 479
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	3 cut(s)	238, 442, 593
ApeKI	GCWGC	3 cut(s)	11, 65, 536
AseI	ATTAAT	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	229, 382
BarI	GAAGNNNNNNTAC	2 cut(s)	195, 227
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	52, 523
BccI	CCATC	2 cut(s)	33, 37
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	340
BfuAI	ACCTGC	2 cut(s)	589, 595
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	3 cut(s)	12, 66, 537
BlsI	GCNGC	3 cut(s)	13, 67, 538
Bme1390I	CCNGG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	2 cut(s)	379, 443
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	612
BpmI	CTGGAG	3 cut(s)	243, 317, 396
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 61
Bse1I	ACTGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	3 cut(s)	44, 48, 414
BseLI	CCNNNNNNNGG	2 cut(s)	39, 61
BseMI	GCAATG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	52, 523
BseYI	CCCAGC	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	3 cut(s)	240, 444, 595
BsiHKAI	GWGCWC	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	39, 61
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	240, 444, 595
Bsp1286I	GDGCHC	2 cut(s)	229, 382
Bsp143I	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
BspANI	GGCC	3 cut(s)	240, 444, 595
BspLI	GGNNCC	2 cut(s)	379, 443
BspMI	ACCTGC	2 cut(s)	589, 595
BspPI	GGATC	3 cut(s)	94, 467, 479
BspQI	GCTCTTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	216, 615
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	70, 525
BstDEI	CTNAG	3 cut(s)	340, 463, 630
BstF5I	GGATG	3 cut(s)	44, 48, 414
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
BstMBI	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 311, 533
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	52, 523
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	4 cut(s)	99, 183, 459, 484
BstYI	RGATCY	4 cut(s)	99, 183, 459, 484
BsuRI	GGCC	3 cut(s)	240, 444, 595
BtsCI	GGATG	3 cut(s)	44, 48, 414
BveI	ACCTGC	2 cut(s)	589, 595
Cac8I	GCNNGC	2 cut(s)	70, 525
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	3 cut(s)	120, 253, 415
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	340, 463, 630
DpnI	GATC	6 cut(s)	101, 185, 330, 461, 486, 533
DpnII	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
Eam1104I	CTCTTC	2 cut(s)	216, 615
EarI	CTCTTC	2 cut(s)	216, 615
Ecl136II	GAGCTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	595
Eco24I	GRGCYC	2 cut(s)	229, 382
Eco47III	AGCGCT	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	229, 382
FaeI	CATG	3 cut(s)	123, 256, 418
FaiI	YATR	9 cut(s)	121, 134, 254, 291, 416, 504, 518, 551, 558
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	3 cut(s)	119, 252, 414
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	3 cut(s)	12, 66, 537
FokI	GGATG	3 cut(s)	51, 55, 421
FriOI	GRGCYC	2 cut(s)	229, 382
Fsp4HI	GCNGC	3 cut(s)	12, 66, 537
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	3 cut(s)	12, 66, 537
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	3 cut(s)	243, 317, 396
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	3 cut(s)	240, 444, 595
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	123, 256, 418
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
Hpy166II	GTNNAC	3 cut(s)	138, 478, 508
Hpy188I	TCNGA	4 cut(s)	99, 113, 396, 615
Hpy8I	GTNNAC	3 cut(s)	138, 478, 508
Hpy99I	CGWCG	4 cut(s)	25, 28, 31, 64
HpyAV	CCTTC	2 cut(s)	449, 550
HpyCH4V	TGCA	6 cut(s)	123, 151, 233, 305, 584, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 311, 533
HpyF3I	CTNAG	3 cut(s)	340, 463, 630
Hsp92II	CATG	3 cut(s)	123, 256, 418
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	4 cut(s)	224, 265, 357, 377
Lsp1109I	GCAGC	2 cut(s)	52, 523
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	6 cut(s)	101, 185, 330, 461, 486, 533
MboI	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
MboII	GAAGA	6 cut(s)	153, 203, 577, 580, 602, 612
MflI	RGATCY	4 cut(s)	99, 183, 459, 484
MhlI	GDGCHC	2 cut(s)	229, 382
MluCI	AATT	1 cut(s)	435
MnlI	CCTC	6 cut(s)	251, 337, 399, 455, 609, 618
MseI	TTAA	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	11, 311, 533
NdeII	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
NlaIII	CATG	3 cut(s)	123, 256, 418
NlaIV	GGNNCC	2 cut(s)	379, 443
NspI	RCATGY	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	13, 67, 538
PshBI	ATTAAT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	379, 443
PspPI	GGNCC	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	4 cut(s)	99, 183, 459, 484
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	3 cut(s)	12, 66, 537
Sau3AI	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
Sau96I	GGNCC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	229, 382
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	595
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	595
StyD4I	CCNGG	1 cut(s)	220
TasI	AATT	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TseI	GCWGC	3 cut(s)	11, 65, 536
TspDTI	ATGAA	2 cut(s)	6, 70
Van91I	CCANNNNNTGG	1 cut(s)	39
VspI	ATTAAT	1 cut(s)	434
XceI	RCATGY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.