Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Forward (+)

50105975 .. 50107996

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG368600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCTCTTCAAGGAAATGGGCAACCACCATATCCTTCGCTGCTTCGTGTATCTATTTCACTGTCATCATCATTCAGATTCCTCTTTTCAGTGTCCCGTGTAGATCTGGAACATGTACATCACCAATAGCAGTCACAGCCCCTCATCTGATGGCATGTGATCTGTTTCCTTTAGTTGCAATAAAAGCACTAGTCTACCCAAGTGCCATTGCGAATGCATTGGTGAAAAATGAAGCAATTCCAAGCTATAGTAACTTGAAGTTACATGACCCCTCTGCTGTAAAGGCAGCTGATGCAATTGCTGATCTCCAGCGCCTAGAGGTTCTGGTTGGAAGCTACCTGTCAGTCGCTGGAGCATTCTGTGGACTCATAAAACCATGGAGAATGAGCTTCTATGGAGTGCTTCTTATCCTATGGGGCCTTGTCAAGGAAATTATATTGAGCAAATCAGCTAGTCCAAATCTTATATACATCCACCCAGCAATGTCAATTGCCGTCTGTTCTGCCTTCTTGTCTATAGCTAAGGATGTAAGGAGGATAATTCGAAGTTGCAGAGGTCTTCAGATTGTAAAAGAAAAACGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.14

Weight (kDa)

9.56

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AclI	AACGTT	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	12, 427
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	12, 259
AhlI	ACTAGT	1 cut(s)	190
AluBI	AGCT	6 cut(s)	246, 290, 336, 390, 452, 521
AluI	AGCT	6 cut(s)	246, 290, 336, 390, 452, 521
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	3, 418
ApeKI	GCWGC	2 cut(s)	41, 287
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	2 cut(s)	114, 235
AsuII	TTCGAA	1 cut(s)	544
BbsI	GAAGAC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	28, 299
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	479
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	3 cut(s)	191, 317, 453
BfmI	CTRYAG	2 cut(s)	247, 516
BfoI	RGCGCY	1 cut(s)	316
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	2 cut(s)	42, 288
BlsI	GCNGC	2 cut(s)	43, 289
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	419
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	551
BpmI	CTGGAG	2 cut(s)	293, 372
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 427
Bse3DI	GCAATG	2 cut(s)	207, 489
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	471, 532
BseLI	CCNNNNNNNGG	2 cut(s)	12, 427
BseMI	GCAATG	2 cut(s)	207, 489
BseXI	GCAGC	2 cut(s)	28, 299
BseYI	CCCAGC	1 cut(s)	478
BshFI	GGCC	2 cut(s)	5, 420
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	12, 427
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	2 cut(s)	220, 356
BsnI	GGCC	2 cut(s)	5, 420
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	104, 160, 304
Bsp19I	CCATGG	1 cut(s)	377
BspANI	GGCC	2 cut(s)	5, 420
BspLI	GGNNCC	1 cut(s)	419
BspT104I	TTCGAA	1 cut(s)	544
BsrDI	GCAATG	2 cut(s)	207, 489
BsrGI	TGTACA	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	3 cut(s)	104, 160, 304
BssT1I	CCWWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	544
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	1 cut(s)	377
BstENI	CCTNNNNNAGG	2 cut(s)	10, 425
BstF5I	GGATG	2 cut(s)	471, 532
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	3 cut(s)	107, 163, 307
BstMBI	GATC	3 cut(s)	104, 160, 304
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 185, 284, 293
BstNSI	RCATGY	2 cut(s)	117, 159
BstSFI	CTRYAG	2 cut(s)	247, 516
BstV1I	GCAGC	2 cut(s)	28, 299
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	5, 420
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	471, 532
BtsIMutI	CAGTG	2 cut(s)	60, 97
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	4 cut(s)	114, 156, 266, 378
CviJI	RGCY	9 cut(s)	5, 140, 246, 290, 336, 390, 420, 452, 521
CviKI_1	RGCY	9 cut(s)	5, 140, 246, 290, 336, 390, 420, 452, 521
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	3 cut(s)	106, 162, 306
DpnII	GATC	3 cut(s)	104, 160, 304
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	545
EcoNI	CCTNNNNNAGG	2 cut(s)	10, 425
EcoO109I	RGGNCCY	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	4 cut(s)	117, 159, 269, 381
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	4 cut(s)	113, 155, 265, 377
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	42, 288
FokI	GGATG	2 cut(s)	458, 539
Fsp4HI	GCNGC	2 cut(s)	42, 288
FspBI	CTAG	3 cut(s)	191, 317, 453
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	2 cut(s)	42, 288
GsaI	CCCAGC	1 cut(s)	482
GsuI	CTGGAG	2 cut(s)	293, 372
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	5, 420
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	4 cut(s)	117, 159, 269, 381
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	79, 366
HphI	GGTGA	2 cut(s)	114, 235
Hpy166II	GTNNAC	2 cut(s)	196, 365
Hpy188I	TCNGA	3 cut(s)	78, 150, 564
Hpy188III	TCNNGA	1 cut(s)	108
Hpy8I	GTNNAC	2 cut(s)	196, 365
HpyAV	CCTTC	2 cut(s)	46, 517
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	4 cut(s)	179, 218, 296, 552
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 185, 284, 293
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	4 cut(s)	117, 159, 269, 381
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	104, 160, 304
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	6 cut(s)	93, 311, 323, 336, 353, 492
Lsp1109I	GCAGC	2 cut(s)	28, 299
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	3 cut(s)	191, 317, 453
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	3 cut(s)	133, 251, 261
MalI	GATC	3 cut(s)	106, 162, 306
MboI	GATC	3 cut(s)	104, 160, 304
MboII	GAAGA	1 cut(s)	551
MfeI	CAATTG	2 cut(s)	297, 489
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	5 cut(s)	237, 297, 432, 489, 540
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	7 cut(s)	16, 93, 153, 283, 313, 528, 548
Mph1103I	ATGCAT	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	290
MunI	CAATTG	2 cut(s)	297, 489
Mva1269I	GAATGC	2 cut(s)	220, 356
MwoI	GCNNNNNNNGC	4 cut(s)	137, 185, 284, 293
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	3 cut(s)	104, 160, 304
NlaIII	CATG	4 cut(s)	117, 159, 269, 381
NlaIV	GGNNCC	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	2 cut(s)	117, 159
NspV	TTCGAA	1 cut(s)	544
PciI	ACATGT	1 cut(s)	113
PctI	GAATGC	2 cut(s)	220, 356
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	43, 289
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PscI	ACATGT	1 cut(s)	113
Psp1406I	AACGTT	1 cut(s)	580
PspFI	CCCAGC	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SatI	GCNGC	2 cut(s)	42, 288
Sau3AI	GATC	3 cut(s)	104, 160, 304
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	360
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	247, 516
SfuI	TTCGAA	1 cut(s)	544
SpeI	ACTAGT	1 cut(s)	190
Sse9I	AATT	5 cut(s)	237, 297, 432, 489, 540
SspMI	CTAG	3 cut(s)	191, 317, 453
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	1 cut(s)	544
TasI	AATT	5 cut(s)	237, 297, 432, 489, 540
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	67, 97
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	41, 287
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	67, 97
XagI	CCTNNNNNAGG	2 cut(s)	10, 425
XceI	RCATGY	2 cut(s)	117, 159
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	3 cut(s)	191, 317, 453
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.