Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Reverse (-)

40032263 .. 40034325

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G478100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCAACTCCGCCATCATCATCAGCACCATCGTCAAAATCGTCAAAGGGATGGATAAGCAACATCTCTTCAATAGCCGCTCGCGTCTACTTCTTCCTAATCATTCTCCAGATCCCGCTTTTCAGAGTTCCATGCAGATCTGGCATGTGTACCACACCATTGCATGTCACTTCTTCTCAATTGATTGCAAGTGAAATCTTTCCTATTCCTGTGGTAAAAGCCCTTCTCTTCCCTGGAGCTGTTGCAAATGGACTTGTAAGGAACATGACTGTTCCAAGCTGGAATAACGTATTAGACATCTATAACTTGACCAATGCAAAGGAATCCCCTGCAGTTACTGACCTTCAGCGCTTAGAGGTTCTAGCGGGAAGCTACTTTGCTGTGGCCGGAGCCCTGGTGGGTCTTCTAAAACGAGGGAGGATGAGCATGTTTGGGACACTTCTAATGCTTTGGGGCCTCATCAAAGAAGGGATCCTCGGAAAGCCTATGAACACAGATCCTACGAAAGCTGTGTTTGTCTACCCAACTATGCTCATTGCCGTAATCGCTGCCTTCTCATCTGTAAAGTACGATGTGAAGAAGGTTGTTAGAAGTGCACCTGCTAGGCCCATTGCAAAGCCTCTTCTGAGGTCTTCAAAATCTAAGCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.41

Weight (kDa)

10.35

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	607
Acc36I	ACCTGC	1 cut(s)	607
AccBSI	CCGCTC	1 cut(s)	80
AccI	GTMKAC	2 cut(s)	87, 519
AccII	CGCG	1 cut(s)	84
AciI	CCGC	4 cut(s)	11, 78, 116, 365
AclWI	GGATC	4 cut(s)	106, 466, 479, 491
AcoI	YGGCCR	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	151, 569
AfeI	AGCGCT	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	72, 636
AjnI	CCWGG	2 cut(s)	232, 393
AluBI	AGCT	5 cut(s)	239, 279, 372, 509, 646
AluI	AGCT	5 cut(s)	239, 279, 372, 509, 646
Alw21I	GWGCWC	1 cut(s)	598
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	4 cut(s)	106, 466, 479, 491
AlwNI	CAGNNNCTG	1 cut(s)	338
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	3 cut(s)	384, 454, 605
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	1 cut(s)	548
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	454, 606
BaeGI	GKGCMC	1 cut(s)	598
BamHI	GGATCC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbsI	GAAGAC	2 cut(s)	395, 624
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	3 cut(s)	22, 37, 45
BceAI	ACGGC	1 cut(s)	524
BciT130I	CCWGG	2 cut(s)	234, 395
BfaI	CTAG	2 cut(s)	362, 603
BfmI	CTRYAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	607
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	2 cut(s)	78, 549
BlsI	GCNGC	2 cut(s)	79, 550
Bme1390I	CCNGG	2 cut(s)	234, 395
BmgT120I	GGNCC	2 cut(s)	454, 606
BmiI	GGNNCC	3 cut(s)	391, 455, 473
BmrFI	CCNGG	2 cut(s)	234, 395
BpiI	GAAGAC	2 cut(s)	395, 624
BpmI	CTGGAG	2 cut(s)	92, 255
BsaJI	CCNNGG	3 cut(s)	232, 393, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bse3DI	GCAATG	3 cut(s)	158, 534, 609
BseBI	CCWGG	2 cut(s)	234, 395
BseDI	CCNNGG	3 cut(s)	232, 393, 475
BseGI	GGATG	2 cut(s)	56, 426
BseMI	GCAATG	3 cut(s)	158, 534, 609
BseMII	CTCAG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	1 cut(s)	535
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	386, 456, 607
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	386, 456, 607
Bsp1286I	GDGCHC	2 cut(s)	394, 598
Bsp143I	GATC	4 cut(s)	111, 137, 471, 496
BspACI	CCGC	4 cut(s)	11, 78, 116, 365
BspANI	GGCC	3 cut(s)	386, 456, 607
BspCNI	CTCAG	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	3 cut(s)	391, 455, 473
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	4 cut(s)	106, 466, 479, 491
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	3 cut(s)	158, 534, 609
BssECI	CCNNGG	3 cut(s)	232, 393, 475
BssMI	GATC	4 cut(s)	111, 137, 471, 496
Bst2UI	CCWGG	2 cut(s)	234, 395
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	3 cut(s)	73, 233, 627
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	352, 626, 642
BstF5I	GGATG	2 cut(s)	56, 426
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	4 cut(s)	114, 140, 474, 499
BstMBI	GATC	4 cut(s)	111, 137, 471, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 545
BstNI	CCWGG	2 cut(s)	234, 395
BstNSI	RCATGY	3 cut(s)	148, 167, 430
BstSCI	CCNGG	2 cut(s)	232, 393
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	535
BstV2I	GAAGAC	2 cut(s)	395, 624
BstX2I	RGATCY	4 cut(s)	111, 137, 471, 496
BstYI	RGATCY	4 cut(s)	111, 137, 471, 496
BsuRI	GGCC	3 cut(s)	386, 456, 607
BtsCI	GGATG	2 cut(s)	56, 426
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	454, 606
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	150, 568
CviAII	CATG	5 cut(s)	132, 145, 164, 265, 427
CviQI	GTAC	2 cut(s)	150, 568
DdeI	CTNAG	3 cut(s)	352, 626, 642
DpnI	GATC	4 cut(s)	113, 139, 473, 498
DpnII	GATC	4 cut(s)	111, 137, 471, 496
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	3 cut(s)	73, 233, 627
EarI	CTCTTC	3 cut(s)	73, 233, 627
Eco24I	GRGCYC	1 cut(s)	394
Eco47III	AGCGCT	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	232, 393
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	5 cut(s)	135, 148, 167, 268, 430
FaiI	YATR	8 cut(s)	133, 146, 165, 266, 303, 428, 488, 530
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	5 cut(s)	131, 144, 163, 264, 426
FauI	CCCGC	2 cut(s)	123, 358
FblI	GTMKAC	2 cut(s)	87, 519
Fnu4HI	GCNGC	2 cut(s)	78, 549
FokI	GGATG	2 cut(s)	63, 433
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	78, 549
FspBI	CTAG	2 cut(s)	362, 603
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	78, 549
GsuI	CTGGAG	2 cut(s)	92, 255
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	386, 456, 607
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	135, 148, 167, 268, 430
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	387
Hpy166II	GTNNAC	4 cut(s)	88, 150, 520, 596
Hpy188I	TCNGA	3 cut(s)	125, 479, 627
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	4 cut(s)	88, 150, 520, 596
HpyAV	CCTTC	5 cut(s)	233, 353, 461, 562, 574
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	8 cut(s)	135, 163, 188, 245, 317, 332, 596, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 545
HpyF3I	CTNAG	3 cut(s)	352, 626, 642
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	135, 148, 167, 268, 430
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	111, 137, 471, 496
LmnI	GCTCC	2 cut(s)	236, 389
Lsp1109I	GCAGC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	362, 603
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	166, 334
MalI	GATC	4 cut(s)	113, 139, 473, 498
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	4 cut(s)	111, 137, 471, 496
MboII	GAAGA	8 cut(s)	60, 85, 165, 220, 395, 589, 614, 624
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	4 cut(s)	111, 137, 471, 496
MhlI	GDGCHC	2 cut(s)	394, 598
MluCI	AATT	1 cut(s)	179
MnlI	CCTC	7 cut(s)	349, 407, 411, 467, 485, 621, 630
MroXI	GAANNNNTTC	1 cut(s)	198
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	234, 395
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	234, 395
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	141, 545
NdeII	GATC	4 cut(s)	111, 137, 471, 496
NlaIII	CATG	5 cut(s)	135, 148, 167, 268, 430
NlaIV	GGNNCC	3 cut(s)	391, 455, 473
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	3 cut(s)	148, 167, 430
PaqCI	CACCTGC	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	79, 550
Psp6I	CCWGG	2 cut(s)	232, 393
PspGI	CCWGG	2 cut(s)	232, 393
PspN4I	GGNNCC	3 cut(s)	391, 455, 473
PspPI	GGNCC	2 cut(s)	454, 606
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	4 cut(s)	111, 137, 471, 496
RsaI	GTAC	2 cut(s)	151, 569
RsaNI	GTAC	2 cut(s)	150, 568
SatI	GCNGC	2 cut(s)	78, 549
Sau3AI	GATC	4 cut(s)	111, 137, 471, 496
Sau96I	GGNCC	2 cut(s)	454, 606
ScrFI	CCNGG	2 cut(s)	234, 395
SduI	GDGCHC	2 cut(s)	394, 598
SfcI	CTRYAG	1 cut(s)	330
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	4 cut(s)	11, 78, 116, 365
SspMI	CTAG	2 cut(s)	362, 603
StyD4I	CCNGG	2 cut(s)	232, 393
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	291
TasI	AATT	1 cut(s)	179
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	594
XceI	RCATGY	3 cut(s)	148, 167, 430
XmiI	GTMKAC	2 cut(s)	87, 519
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	362, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.