Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Forward (+)

22838010 .. 22839850

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGACTCCTGCTGCTTCGTCGTCGTCCAAAGGATGGATGAGCAACATCCAAGCGAAGGCTGCTCAAATATTTTTCATCCTGATCGTTTTCCAGATCCCACTTTTCAGAGTTCCGTGTAGGGCGGGTATGTGTAACACACCATTGCATTTCACTTCTTCCCAGCTGATTACAAGTGAGATCTTTCCTGTTCCCGTAGTAAAGGCTCTTCTCTACCCTGGAGCTCTTGCAAATGGCCTTGTAAGGAACATGACTGTTCCGAGCTGGGATAACTTGTTAGAAATCTATAACTTGACAAATGCAAAGGAAGCCAATCCAATTACTGATCTCCAGCGCTTAGAGGTTCTAACAGGAAGCTACTTCTCTGTGGCTGGAGCGTTTGTGGGTGTTCTGAAGTCAGGGAGGATGAGCATGTTTGGGACACTTCTATTAATTTGGGGCCTCATCAAAGAAGGGATCCTAGGAAAGCCTGTGAACACTGATCCTACTAGAGCCGTGTATGTCTACCCAACTATGTTGCTTGCGTTGATCGCCGCCTTCTCATCCATAAAGTATAATGCAAACAAGATAGCTAGGCCTGCACCTGCTAGGCCTATTGCAAAGCCTGTTCAGAGGTCTTCAAAATCTAAGCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.04

Weight (kDa)

10.14

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	592
Acc36I	ACCTGC	1 cut(s)	592
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	2 cut(s)	125, 534
AclWI	GGATC	4 cut(s)	91, 451, 464, 476
AcuI	CTGAAG	1 cut(s)	413
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	36, 58
AgsI	TTSAA	1 cut(s)	621
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	6 cut(s)	166, 224, 264, 357, 572, 631
AluI	AGCT	6 cut(s)	166, 224, 264, 357, 572, 631
Alw21I	GWGCWC	1 cut(s)	226
AlwI	GGATC	4 cut(s)	91, 451, 464, 476
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	4 cut(s)	235, 439, 575, 590
ApeKI	GCWGC	2 cut(s)	14, 62
AseI	ATTAAT	1 cut(s)	431
AspA2I	CCTAGG	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	439
AvrII	CCTAGG	1 cut(s)	460
BamHI	GGATCC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	226
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	1 cut(s)	219
BfaI	CTAG	4 cut(s)	461, 489, 573, 588
BfoI	RGCGCY	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	3 cut(s)	15, 63, 534
BlnI	CCTAGG	1 cut(s)	460
BlsI	GCNGC	3 cut(s)	16, 64, 535
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	440, 458
BmrFI	CCNGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	3 cut(s)	240, 314, 393
BsaJI	CCNNGG	2 cut(s)	217, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 58
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	217, 460
BseGI	GGATG	6 cut(s)	41, 45, 48, 78, 411, 542
BseLI	CCNNNNNNNGG	2 cut(s)	36, 58
BseMI	GCAATG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	2 cut(s)	162, 264
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	4 cut(s)	237, 441, 577, 592
BsiHKAI	GWGCWC	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	36, 58
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	237, 441, 577, 592
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	7 cut(s)	84, 96, 180, 325, 456, 481, 528
BspACI	CCGC	2 cut(s)	125, 534
BspANI	GGCC	4 cut(s)	237, 441, 577, 592
BspLI	GGNNCC	2 cut(s)	440, 458
BspMI	ACCTGC	1 cut(s)	592
BspPI	GGATC	4 cut(s)	91, 451, 464, 476
BspQI	GCTCTTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	217, 460
BssMI	GATC	7 cut(s)	84, 96, 180, 325, 456, 481, 528
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	522, 579
BstDEI	CTNAG	2 cut(s)	337, 627
BstF5I	GGATG	6 cut(s)	41, 45, 48, 78, 411, 542
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	7 cut(s)	87, 99, 183, 328, 459, 484, 531
BstMBI	GATC	7 cut(s)	84, 96, 180, 325, 456, 481, 528
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 62, 308, 530, 578
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	3 cut(s)	96, 180, 456
BstYI	RGATCY	3 cut(s)	96, 180, 456
BsuRI	GGCC	4 cut(s)	237, 441, 577, 592
BtsCI	GGATG	6 cut(s)	41, 45, 48, 78, 411, 542
BtsIMutI	CAGTG	1 cut(s)	477
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	522, 579
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	439
CviAII	CATG	2 cut(s)	250, 412
DdeI	CTNAG	2 cut(s)	337, 627
DpnI	GATC	7 cut(s)	86, 98, 182, 327, 458, 483, 530
DpnII	GATC	7 cut(s)	84, 96, 180, 325, 456, 481, 528
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	460
Eco147I	AGGCCT	2 cut(s)	577, 592
Eco24I	GRGCYC	1 cut(s)	226
Eco47III	AGCGCT	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	2 cut(s)	253, 415
FaiI	YATR	8 cut(s)	131, 251, 288, 413, 501, 515, 548, 555
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	249, 411
FauI	CCCGC	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	15, 63, 534
FokI	GGATG	6 cut(s)	35, 48, 52, 65, 418, 529
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	3 cut(s)	15, 63, 534
FspBI	CTAG	4 cut(s)	461, 489, 573, 588
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	3 cut(s)	15, 63, 534
GsaI	CCCAGC	2 cut(s)	166, 268
GsuI	CTGGAG	3 cut(s)	240, 314, 393
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	4 cut(s)	237, 441, 577, 592
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	253, 415
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	475, 505
Hpy188I	TCNGA	4 cut(s)	110, 261, 393, 612
Hpy188III	TCNNGA	2 cut(s)	82, 94
Hpy8I	GTNNAC	2 cut(s)	475, 505
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	3 cut(s)	52, 446, 547
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	6 cut(s)	148, 230, 302, 560, 581, 599
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 62, 308, 530, 578
HpyF3I	CTNAG	2 cut(s)	337, 627
Hsp92II	CATG	2 cut(s)	253, 415
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	7 cut(s)	84, 96, 180, 325, 456, 481, 528
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	2 cut(s)	221, 374
Lsp1109I	GCAGC	1 cut(s)	49
MaeI	CTAG	4 cut(s)	461, 489, 573, 588
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	7 cut(s)	86, 98, 182, 327, 458, 483, 530
MboI	GATC	7 cut(s)	84, 96, 180, 325, 456, 481, 528
MboII	GAAGA	3 cut(s)	150, 200, 609
MflI	RGATCY	3 cut(s)	96, 180, 456
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	2 cut(s)	318, 432
MnlI	CCTC	4 cut(s)	334, 396, 452, 606
MseI	TTAA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	5 cut(s)	11, 62, 308, 530, 578
NdeII	GATC	7 cut(s)	84, 96, 180, 325, 456, 481, 528
NlaIII	CATG	2 cut(s)	253, 415
NlaIV	GGNNCC	2 cut(s)	440, 458
NspI	RCATGY	1 cut(s)	415
PaqCI	CACCTGC	1 cut(s)	592
PceI	AGGCCT	2 cut(s)	577, 592
PciSI	GCTCTTC	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	16, 64, 535
PshBI	ATTAAT	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	2 cut(s)	162, 264
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	440, 458
PspPI	GGNCC	1 cut(s)	439
PsuI	RGATCY	3 cut(s)	96, 180, 456
PvuII	CAGCTG	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	226
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	3 cut(s)	15, 63, 534
Sau3AI	GATC	7 cut(s)	84, 96, 180, 325, 456, 481, 528
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	9 cut(s)	168, 226, 266, 345, 359, 574, 586, 617, 633
Sse9I	AATT	2 cut(s)	318, 432
SseBI	AGGCCT	2 cut(s)	577, 592
SsiI	CCGC	2 cut(s)	125, 534
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	4 cut(s)	461, 489, 573, 588
SstI	GAGCTC	1 cut(s)	226
StuI	AGGCCT	2 cut(s)	577, 592
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	256
TasI	AATT	2 cut(s)	318, 432
TauI	GCSGC	1 cut(s)	536
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	2 cut(s)	14, 62
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	431
XceI	RCATGY	1 cut(s)	415
XmaJI	CCTAGG	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	4 cut(s)	461, 489, 573, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.