Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Forward (+)

59010992 .. 59013186

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG404600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGTACCACACCATTGCATTTCACATCTTCCCAGCTGATTACAAGTGAGATCTTTCCTGTTCCTGTAGTAAAGGCTCTTCTCTACCCTGGAGCTCTTGCAAATGGCCTCATAAGGAACATGACTGTTCCAAGCTGGAATAACTTGTTAGAAATCTATAACTTGACCAATGCAAAGGAAGCCAATCCAGTTACTGATCTCCAGCGCTTAGAGGTTCTAACAGGGAGCTACTTTTCTGTGGCTGGAGCCCTTGTGGGTGTTCTGAAATCAGGGAGGATGAGCATGTTTGGGACACTTCTATTAATTTGGGGCCTCATCAAAGAAGGGATCTTAGGAAAGCCTGTGAACACAGATCCTACTAAAGCTGTCTATGTCTACCCAACTATGTTGCTTGCCTTGATCGCTGCCTTCTCATCTATAAAGTATAATGCGAAGAAGATTGTTAGACCTGCACCTGCTAGGCCTATGGCAAAGCCTCTTCAGAGGTCTTCAAAATCTAAGCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.4

Weight (kDa)

10.05

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	2 cut(s)	457, 463
AccI	GTMKAC	1 cut(s)	375
AclWI	GGATC	2 cut(s)	335, 347
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	7
AfeI	AGCGCT	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	6 cut(s)	37, 95, 135, 228, 365, 502
AluI	AGCT	6 cut(s)	37, 95, 135, 228, 365, 502
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	2 cut(s)	335, 347
AlwNI	CAGNNNCTG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	3 cut(s)	106, 310, 461
ApeKI	GCWGC	1 cut(s)	404
AseI	ATTAAT	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	97, 250
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	90
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	208
BfuAI	ACCTGC	2 cut(s)	457, 463
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	247, 311
BmrFI	CCNGG	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	3 cut(s)	111, 185, 264
BsaJI	CCNNGG	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	3 cut(s)	108, 312, 463
BsiHKAI	GWGCWC	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	108, 312, 463
Bsp1286I	GDGCHC	2 cut(s)	97, 250
Bsp143I	GATC	5 cut(s)	51, 196, 327, 352, 399
BspANI	GGCC	3 cut(s)	108, 312, 463
BspLI	GGNNCC	2 cut(s)	247, 311
BspMI	ACCTGC	2 cut(s)	457, 463
BspPI	GGATC	2 cut(s)	335, 347
BspQI	GCTCTTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	5 cut(s)	51, 196, 327, 352, 399
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	84, 483
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	3 cut(s)	208, 331, 498
BstF5I	GGATG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	5 cut(s)	54, 199, 330, 355, 402
BstMBI	GATC	5 cut(s)	51, 196, 327, 352, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 401
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	3 cut(s)	51, 327, 352
BstYI	RGATCY	3 cut(s)	51, 327, 352
BsuRI	GGCC	3 cut(s)	108, 312, 463
BtsCI	GGATG	1 cut(s)	282
BveI	ACCTGC	2 cut(s)	457, 463
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	2 cut(s)	121, 283
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	3 cut(s)	208, 331, 498
DpnI	GATC	5 cut(s)	53, 198, 329, 354, 401
DpnII	GATC	5 cut(s)	51, 196, 327, 352, 399
Eam1104I	CTCTTC	2 cut(s)	84, 483
EarI	CTCTTC	2 cut(s)	84, 483
Ecl136II	GAGCTC	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	463
Eco24I	GRGCYC	2 cut(s)	97, 250
Eco47III	AGCGCT	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	2 cut(s)	97, 250
FaeI	CATG	2 cut(s)	124, 286
FaiI	YATR	9 cut(s)	113, 122, 159, 284, 372, 386, 419, 426, 467
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	2 cut(s)	120, 282
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	289
FriOI	GRGCYC	2 cut(s)	97, 250
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	37
GsuI	CTGGAG	3 cut(s)	111, 185, 264
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	3 cut(s)	108, 312, 463
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	124, 286
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
Hpy166II	GTNNAC	3 cut(s)	6, 346, 376
Hpy188I	TCNGA	2 cut(s)	264, 483
Hpy8I	GTNNAC	3 cut(s)	6, 346, 376
HpyAV	CCTTC	2 cut(s)	317, 418
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	19, 101, 173, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 401
HpyF3I	CTNAG	3 cut(s)	208, 331, 498
Hsp92II	CATG	2 cut(s)	124, 286
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	51, 196, 327, 352, 399
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	3 cut(s)	92, 225, 245
Lsp1109I	GCAGC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	5 cut(s)	53, 198, 329, 354, 401
MboI	GATC	5 cut(s)	51, 196, 327, 352, 399
MboII	GAAGA	6 cut(s)	21, 71, 445, 448, 470, 480
MflI	RGATCY	3 cut(s)	51, 327, 352
MhlI	GDGCHC	2 cut(s)	97, 250
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	6 cut(s)	119, 205, 267, 323, 477, 486
MseI	TTAA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	179, 401
NdeII	GATC	5 cut(s)	51, 196, 327, 352, 399
NlaIII	CATG	2 cut(s)	124, 286
NlaIV	GGNNCC	2 cut(s)	247, 311
NspI	RCATGY	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	247, 311
PspPI	GGNCC	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	3 cut(s)	51, 327, 352
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SacI	GAGCTC	1 cut(s)	97
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	5 cut(s)	51, 196, 327, 352, 399
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	97, 250
SfcI	CTRYAG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	303
SseBI	AGGCCT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	97
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	127
TasI	AATT	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	1 cut(s)	404
VspI	ATTAAT	1 cut(s)	302
XceI	RCATGY	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.