Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003420.1

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Reverse (-)

40335 .. 41300

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003420.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgactgttccaagctggaataacttgttagaaatctataacttgaccaatgcaaaggaagccaatccagttactgatctccagcgcttagaggttctaacagggagctacttttctgtggctggagcccttgtgggtgttctgaaatcagggaggatgagcatgtttgggacacttctattaatttggggcctcatcaaagaagggatcttaggaaagcctgtgaacacagatcctactaaagctgtctatgtctacccaactatgttgcttgccttgatcgctgccttctcatccataaagtataatgcaaagaagattgttagacctgcacctgctaggcctattgcaaagcctcttcagaggtcttcaaaatctaagctgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.09

Weight (kDa)

10.15

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	2 cut(s)	337, 343
AccI	GTMKAC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	215, 227
AcuI	CTGAAG	1 cut(s)	344
AfeI	AGCGCT	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	372
AluBI	AGCT	4 cut(s)	15, 108, 245, 382
AluI	AGCT	4 cut(s)	15, 108, 245, 382
AlwI	GGATC	2 cut(s)	215, 227
AlwNI	CAGNNNCTG	1 cut(s)	74
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	2 cut(s)	190, 341
ApeKI	GCWGC	1 cut(s)	284
AseI	ATTAAT	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	88
BfuAI	ACCTGC	2 cut(s)	337, 343
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	127, 191
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	2 cut(s)	65, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse1I	ACTGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	162, 293
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	192, 343
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	192, 343
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	76, 207, 232, 279
BspANI	GGCC	2 cut(s)	192, 343
BspLI	GGNNCC	2 cut(s)	127, 191
BspMI	ACCTGC	2 cut(s)	337, 343
BspPI	GGATC	2 cut(s)	215, 227
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	76, 207, 232, 279
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	88, 211, 378
BstF5I	GGATG	2 cut(s)	162, 293
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	4 cut(s)	79, 210, 235, 282
BstMBI	GATC	4 cut(s)	76, 207, 232, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 281
BstNSI	RCATGY	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	2 cut(s)	207, 232
BstYI	RGATCY	2 cut(s)	207, 232
BsuRI	GGCC	2 cut(s)	192, 343
BtsCI	GGATG	2 cut(s)	162, 293
BveI	ACCTGC	2 cut(s)	337, 343
Cac8I	GCNNGC	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	190
CviAII	CATG	1 cut(s)	163
DdeI	CTNAG	3 cut(s)	88, 211, 378
DpnI	GATC	4 cut(s)	78, 209, 234, 281
DpnII	GATC	4 cut(s)	76, 207, 232, 279
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	130
Eco47III	AGCGCT	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	1 cut(s)	166
FaiI	YATR	6 cut(s)	39, 164, 252, 266, 299, 306
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	169, 280
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	65, 144
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	192, 343
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	226, 256
Hpy188I	TCNGA	2 cut(s)	144, 363
Hpy8I	GTNNAC	2 cut(s)	226, 256
HpyAV	CCTTC	2 cut(s)	197, 298
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	4 cut(s)	53, 311, 332, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 281
HpyF3I	CTNAG	3 cut(s)	88, 211, 378
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	76, 207, 232, 279
LmnI	GCTCC	2 cut(s)	105, 125
LpnPI	CCDG	8 cut(s)	81, 87, 95, 108, 135, 234, 342, 348
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	78, 209, 234, 281
MboI	GATC	4 cut(s)	76, 207, 232, 279
MboII	GAAGA	3 cut(s)	328, 350, 360
MflI	RGATCY	2 cut(s)	207, 232
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	5 cut(s)	85, 147, 203, 357, 366
MseI	TTAA	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	59, 281
NdeII	GATC	4 cut(s)	76, 207, 232, 279
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	127, 191
NspI	RCATGY	1 cut(s)	166
PaqCI	CACCTGC	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	286
PshBI	ATTAAT	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	127, 191
PspPI	GGNCC	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	207, 232
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	4 cut(s)	76, 207, 232, 279
Sau96I	GGNCC	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	8 cut(s)	17, 96, 110, 247, 331, 337, 368, 384
Sse9I	AATT	1 cut(s)	183
SseBI	AGGCCT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	7
TasI	AATT	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	1 cut(s)	284
VspI	ATTAAT	1 cut(s)	182
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.